Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004908

Physical Location & Seq

Genomic Coordinates Reverse (-)

31170 .. 33171

Gene Structure 2002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G01050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAGTGAAGAAACTAAAGATAACCAGAGGCTGCAGCGACCAGCTCCTCGTCTTAACGAGAGGATTCTCTCATCCTTGTCAAGAAGATCCGTAGCTGCTCATCCATGGCATGATCTTGAGATTGGACCTGGAGCTCCACAGATTTTCAATGTGGTTGTTGAGATCACTAAAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAGACAGGACTCATCAAGGTTGATCGTATTCTCTACTCATCAGTTGTGTACCCTCACAACTATGGTTTTGTTCCTCGCACATTGTGTGAAGACAATGACCCCATTGATGTCTTAGTCATCATGCAGGAACCTGTGCTTCCGGGTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAGGGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATATAAGCACTACACTGACATCAAAGAACTTCCTCCTCACCGTCTCTCTGAAATCCGTCGTTTCTTCGAAGACTACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTGAGTCTGCGGTTGAAGCTATCCAGTACTCAATGGACCTCTATGCTGAATACATTCTCCACACCCTGAGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019915 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051235 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

212

Amino Acids

24.48

Weight (kDa)

5.73

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyrophosphatase	PF00719	51 - 202	2.4e-59	Inorganic pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01050 AT1G01050 AT2G46860 AT4G01480 AT4G01480
fragaria_vesca	FvH4_7g17871 FvH4_7g17880 FvH4_7g17880 FvH4_7g17880
malus_domestica	MD01G1091200.v1.1 MD01G1091400.v1.1 MD07G1161500.v1.1
prunus_persica	Prupe.2G200700_v2.0.a1 Prupe.2G200700_v2.0.a1 Prupe.2G200800_v2.0.a1 Prupe.2G200800_v2.0.a1
pyrus_communis	pycom01g11550
rosa_chinensis	RchiOBHm_Chr1g0361351
rosa_laevigata	RLG00000027723 RLG00000027724
rosa_multiflora	Rmu_sc0002119.1_g000027
rosa_roxburghii	Rroxscaffold_4G00295030
rosa_rugosa	Rorug01G0288300 Rorug01G0288400 Rorug01G0288500 Rorug01G0288800
rosa_samantha	Rh1AG299600 Rh1BG263400
rosa_wichuraiana	Rw1G026520 Rw1G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	572
AclWI	GGATC	2 cut(s)	81, 428
AdeI	CACNNNGTG	1 cut(s)	285
AfaI	GTAC	2 cut(s)	251, 590
AgsI	TTSAA	2 cut(s)	148, 578
AjnI	CCWGG	2 cut(s)	127, 390
AluBI	AGCT	5 cut(s)	44, 95, 134, 193, 581
AluI	AGCT	5 cut(s)	44, 95, 134, 193, 581
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	488
AlwI	GGATC	2 cut(s)	81, 428
AlwNI	CAGNNNCTG	1 cut(s)	31
ApeKI	GCWGC	3 cut(s)	31, 34, 95
AseI	ATTAAT	1 cut(s)	374
Asp700I	GAANNNNTTC	1 cut(s)	615
AspS9I	GGNCC	2 cut(s)	125, 598
AsuC2I	CCSGG	1 cut(s)	342
AsuHPI	GGTGA	2 cut(s)	407, 470
AsuII	TTCGAA	1 cut(s)	507
AvaII	GGWCC	2 cut(s)	125, 598
AxyI	CCTNAGG	1 cut(s)	629
BanII	GRGCYC	1 cut(s)	136
BbsI	GAAGAC	2 cut(s)	297, 516
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	3 cut(s)	18, 46, 82
BccI	CCATC	1 cut(s)	568
BciT130I	CCWGG	2 cut(s)	129, 392
BcnI	CCSGG	1 cut(s)	342
BcoDI	GTCTC	1 cut(s)	488
BfmI	CTRYAG	1 cut(s)	32
BisI	GCNGC	3 cut(s)	32, 35, 96
BlsI	GCNGC	3 cut(s)	33, 36, 97
BmcAI	AGTACT	1 cut(s)	590
Bme1390I	CCNGG	3 cut(s)	129, 342, 392
Bme18I	GGWCC	2 cut(s)	125, 598
BmgT120I	GGNCC	2 cut(s)	125, 598
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	3 cut(s)	129, 342, 392
BpiI	GAAGAC	2 cut(s)	297, 516
BpmI	CTGGAG	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	104, 391
Bse1I	ACTGG	1 cut(s)	586
Bse21I	CCTNAGG	1 cut(s)	629
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	2 cut(s)	129, 392
BseDI	CCNNGG	2 cut(s)	104, 391
BseGI	GGATG	2 cut(s)	71, 100
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	2 cut(s)	555, 620
BseNI	ACTGG	1 cut(s)	586
BseRI	GAGGAG	2 cut(s)	36, 465
BseXI	GCAGC	3 cut(s)	18, 46, 82
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	488
BsmBI	CGTCTC	1 cut(s)	488
Bsp119I	TTCGAA	1 cut(s)	507
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	6 cut(s)	86, 112, 162, 223, 411, 433
Bsp19I	CCATGG	1 cut(s)	104
BspACI	CCGC	1 cut(s)	572
BspCNI	CTCAG	2 cut(s)	556, 621
BspLI	GGNNCC	1 cut(s)	330
BspMAI	CTGCAG	1 cut(s)	36
BspPI	GGATC	2 cut(s)	81, 428
BspT104I	TTCGAA	1 cut(s)	507
BsrDI	GCAATG	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	586
BssECI	CCNNGG	2 cut(s)	104, 391
BssMI	GATC	6 cut(s)	86, 112, 162, 223, 411, 433
BssT1I	CCWWGG	1 cut(s)	104
Bst2UI	CCWGG	2 cut(s)	129, 392
Bst4CI	ACNGT	1 cut(s)	482
BstBI	TTCGAA	1 cut(s)	507
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	3 cut(s)	313, 564, 629
BstDSI	CCRYGG	1 cut(s)	104
BstF5I	GGATG	2 cut(s)	71, 100
BstKTI	GATC	6 cut(s)	89, 115, 165, 226, 414, 436
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	6 cut(s)	86, 112, 162, 223, 411, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	578
BstNI	CCWGG	2 cut(s)	129, 392
BstSCI	CCNGG	3 cut(s)	127, 340, 390
BstSFI	CTRYAG	1 cut(s)	32
BstV1I	GCAGC	3 cut(s)	18, 46, 82
BstV2I	GAAGAC	2 cut(s)	297, 516
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
Bsu36I	CCTNAGG	1 cut(s)	629
BtgI	CCRYGG	1 cut(s)	104
BtsCI	GGATG	2 cut(s)	71, 100
BtsI	GCAGTG	2 cut(s)	426, 549
BtsIMutI	CAGTG	3 cut(s)	426, 453, 549
Cac8I	GCNNGC	1 cut(s)	357
CaiI	CAGNNNCTG	1 cut(s)	31
Cfr13I	GGNCC	2 cut(s)	125, 598
Csp6I	GTAC	2 cut(s)	250, 589
CviAII	CATG	3 cut(s)	105, 110, 322
CviJI	RGCY	7 cut(s)	31, 44, 95, 134, 193, 365, 581
CviKI_1	RGCY	7 cut(s)	31, 44, 95, 134, 193, 365, 581
CviQI	GTAC	2 cut(s)	250, 589
DdeI	CTNAG	3 cut(s)	313, 564, 629
DpnI	GATC	6 cut(s)	88, 114, 164, 225, 413, 435
DpnII	GATC	6 cut(s)	86, 112, 162, 223, 411, 433
DraIII	CACNNNGTG	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	2 cut(s)	125, 598
Eco53kI	GAGCTC	1 cut(s)	134
Eco81I	CCTNAGG	1 cut(s)	629
EcoICRI	GAGCTC	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	127, 390
EcoT14I	CCWWGG	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	104
Esp3I	CGTCTC	1 cut(s)	488
FaeI	CATG	3 cut(s)	108, 113, 325
FaiI	YATR	7 cut(s)	106, 111, 264, 323, 383, 444, 606
FatI	CATG	3 cut(s)	104, 109, 321
Fnu4HI	GCNGC	3 cut(s)	32, 35, 96
FokI	GGATG	2 cut(s)	58, 87
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	3 cut(s)	32, 35, 96
GluI	GCNGC	3 cut(s)	32, 35, 96
GsuI	CTGGAG	1 cut(s)	150
HapII	CCGG	1 cut(s)	341
Hin1II	CATG	3 cut(s)	108, 113, 325
HinfI	GANTC	3 cut(s)	64, 210, 566
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	2 cut(s)	407, 470
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	490, 565
Hpy188III	TCNNGA	3 cut(s)	81, 116, 437
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	1 cut(s)	501
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4V	TGCA	4 cut(s)	34, 325, 419, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	578
HpyF3I	CTNAG	3 cut(s)	313, 564, 629
Hsp92II	CATG	3 cut(s)	108, 113, 325
Kzo9I	GATC	6 cut(s)	86, 112, 162, 223, 411, 433
LmnI	GCTCC	3 cut(s)	49, 131, 139
Lsp1109I	GCAGC	3 cut(s)	18, 46, 82
MalI	GATC	6 cut(s)	88, 114, 164, 225, 413, 435
MboI	GATC	6 cut(s)	86, 112, 162, 223, 411, 433
MboII	GAAGA	5 cut(s)	20, 96, 302, 496, 521
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	136
MlyI	GAGTC	2 cut(s)	204, 575
MnlI	CCTC	9 cut(s)	21, 54, 57, 264, 285, 483, 486, 611, 624
MroXI	GAANNNNTTC	1 cut(s)	615
MseI	TTAA	2 cut(s)	54, 374
MslI	CAYNNNNRTG	2 cut(s)	261, 419
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	3 cut(s)	129, 342, 392
MvaI	CCWGG	2 cut(s)	129, 392
MwoI	GCNNNNNNNGC	1 cut(s)	578
NciI	CCSGG	1 cut(s)	342
NcoI	CCATGG	1 cut(s)	104
NdeII	GATC	6 cut(s)	86, 112, 162, 223, 411, 433
NlaIII	CATG	3 cut(s)	108, 113, 325
NlaIV	GGNNCC	1 cut(s)	330
NspV	TTCGAA	1 cut(s)	507
PdmI	GAANNNNTTC	1 cut(s)	615
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	3 cut(s)	33, 36, 97
PleI	GAGTC	2 cut(s)	204, 574
PpsI	GAGTC	2 cut(s)	204, 574
PshBI	ATTAAT	1 cut(s)	374
Psp124BI	GAGCTC	1 cut(s)	136
Psp6I	CCWGG	2 cut(s)	127, 390
PspGI	CCWGG	2 cut(s)	127, 390
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	2 cut(s)	125, 598
PstI	CTGCAG	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	2 cut(s)	251, 590
RsaNI	GTAC	2 cut(s)	250, 589
RseI	CAYNNNNRTG	2 cut(s)	261, 419
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	2 cut(s)	54, 374
SatI	GCNGC	3 cut(s)	32, 35, 96
Sau3AI	GATC	6 cut(s)	86, 112, 162, 223, 411, 433
Sau96I	GGNCC	2 cut(s)	125, 598
ScaI	AGTACT	1 cut(s)	590
SchI	GAGTC	2 cut(s)	204, 575
ScrFI	CCNGG	3 cut(s)	129, 342, 392
SduI	GDGCHC	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	32
SfuI	TTCGAA	1 cut(s)	507
SinI	GGWCC	2 cut(s)	125, 598
SmiMI	CAYNNNNRTG	2 cut(s)	261, 419
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SsiI	CCGC	1 cut(s)	572
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	3 cut(s)	127, 340, 390
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	482
TaqI	TCGA	1 cut(s)	507
TatI	WGTACW	1 cut(s)	588
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	2 cut(s)	54, 374
Tru9I	TTAA	2 cut(s)	54, 374
TscAI	CASTG	3 cut(s)	426, 460, 549
TseI	GCWGC	3 cut(s)	31, 34, 95
TspGWI	ACGGA	2 cut(s)	79, 485
TspRI	CASTG	3 cut(s)	426, 460, 549
VpaK11BI	GGWCC	2 cut(s)	125, 598
VspI	ATTAAT	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	615
ZrmI	AGTACT	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.