Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004908

Physical Location & Seq

Genomic Coordinates Forward (+)

12555009 .. 12557208

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g11550.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTTCATCCAATCACTCCAGCCTTATAAGCACATTTGCTCTTCAATCCTCCTTTTCTTAGTTTCAAGTTTCTGCATCAACAAAGTTCCCCAACTGCCCTTTTTGCACTTTCAAGAGATGTCTGGAGGAGAAGAAACTAGAACTCAAAAAGCTCCCAAATTGAATGAGAGGATCCTTTCATCTCTGTCAAGAAGATCAGTTGCTGCACATCCTTGGCATGATCTTGAAATTGGACCTAGTGCACCCGATATTTTCAACGTTGTTATCGAGATAACAAAGGGAAGCAAAGTCAAATATGAACTTGACAAGAAGACAGGAATGATTAAGGTTGATCGGATTTTATACTCGTCGGTGGTGTATCCTCACAATTACGGCTTCATTCCTCGCACCTTGTGTGAAGACAATCGATCCACTGGATGTTTTAGTCCTCATGAACCTGTTCTTCCGGGTTGCTTTCTGCGAGCCAGAGCCATTGGAGTGATGCCCATGATTGATCAGGGAGAGAAAGATGATAAGATCATCGCAGTCTGCGTACCGATCGATCCAGAGTACACACATTACACTGCACTCGATGACCTCCCCCCTCATCGCCTTTCTGAGATTCGTCGCTTCTTTGAAGACTACAAGAAGAATGAGAACAAAGAGGTTGCAGTAAACGCCTTCTTGCCCGCTAGCACTGCTCTTGAAGCTATCCAGTACTCAATGGATCTTTATGCTGAGTACATAATGCACACCTTAAGGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019915 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051235 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

249

Amino Acids

28.37

Weight (kDa)

6.75

Isoelectric Point (pI)

59.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01050 AT1G01050 AT2G46860 AT4G01480 AT4G01480
fragaria_vesca	FvH4_7g17871 FvH4_7g17880 FvH4_7g17880 FvH4_7g17880
malus_domestica	MD01G1091200.v1.1 MD01G1091400.v1.1 MD07G1161500.v1.1
prunus_persica	Prupe.2G200700_v2.0.a1 Prupe.2G200700_v2.0.a1 Prupe.2G200800_v2.0.a1 Prupe.2G200800_v2.0.a1
pyrus_communis	pycom01g11550
rosa_chinensis	RchiOBHm_Chr1g0361351
rosa_laevigata	RLG00000027723 RLG00000027724
rosa_multiflora	Rmu_sc0002119.1_g000027
rosa_roxburghii	Rroxscaffold_4G00295030
rosa_rugosa	Rorug01G0288300 Rorug01G0288400 Rorug01G0288500 Rorug01G0288800
rosa_samantha	Rh1AG299600 Rh1BG263400
rosa_wichuraiana	Rw1G026520 Rw1G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	27
AciI	CCGC	2 cut(s)	669, 742
AclI	AACGTT	1 cut(s)	258
AclWI	GGATC	5 cut(s)	166, 179, 402, 536, 714
AdeI	CACNNNGTG	1 cut(s)	393
AfaI	GTAC	4 cut(s)	534, 551, 698, 722
AfiI	CCNNNNNNNGG	1 cut(s)	741
AflII	CTTAAG	1 cut(s)	736
AgsI	TTSAA	8 cut(s)	45, 66, 113, 163, 227, 256, 617, 686
AluBI	AGCT	2 cut(s)	152, 689
AluI	AGCT	2 cut(s)	152, 689
Alw21I	GWGCWC	1 cut(s)	244
Alw44I	GTGCAC	1 cut(s)	240
AlwI	GGATC	5 cut(s)	166, 179, 402, 536, 714
AlwNI	CAGNNNCTG	1 cut(s)	203
ApaLI	GTGCAC	1 cut(s)	240
ApeKI	GCWGC	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	447
AsuNHI	GCTAGC	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	244
BamHI	GGATCC	1 cut(s)	171
BbsI	GAAGAC	3 cut(s)	317, 405, 624
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	1 cut(s)	190
BceAI	ACGGC	1 cut(s)	388
BciVI	GTATCC	1 cut(s)	369
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	447
BfaI	CTAG	3 cut(s)	138, 237, 672
BfrI	CTTAAG	1 cut(s)	736
BfuI	GTATCC	1 cut(s)	369
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
BmcAI	AGTACT	1 cut(s)	698
Bme1390I	CCNGG	1 cut(s)	447
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	447
BmsI	GCATC	2 cut(s)	84, 471
BmtI	GCTAGC	1 cut(s)	675
BpiI	GAAGAC	3 cut(s)	317, 405, 624
BpmI	CTGGAG	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	447
Bsa29I	ATCGAT	2 cut(s)	406, 540
BsaJI	CCNNGG	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	1 cut(s)	741
Bse1I	ACTGG	2 cut(s)	418, 694
BseCI	ATCGAT	2 cut(s)	406, 540
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	3 cut(s)	6, 208, 422
BseLI	CCNNNNNNNGG	1 cut(s)	741
BseMII	CTCAG	2 cut(s)	588, 708
BseNI	ACTGG	2 cut(s)	418, 694
BseRI	GAGGAG	1 cut(s)	141
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	190
BsgI	GTGCAG	2 cut(s)	189, 549
Bsh1285I	CGRYCG	1 cut(s)	540
BshVI	ATCGAT	2 cut(s)	406, 540
BsiEI	CGRYCG	1 cut(s)	540
BsiHKAI	GWGCWC	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	446
BslI	CCNNNNNNNGG	1 cut(s)	741
Bsp1286I	GDGCHC	1 cut(s)	244
BspACI	CCGC	2 cut(s)	669, 742
BspCNI	CTCAG	2 cut(s)	589, 709
BspDI	ATCGAT	2 cut(s)	406, 540
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	173
BspOI	GCTAGC	1 cut(s)	675
BspPI	GGATC	5 cut(s)	166, 179, 402, 536, 714
BspQI	GCTCTTC	1 cut(s)	46
BspTI	CTTAAG	1 cut(s)	736
BsrI	ACTGG	2 cut(s)	418, 694
BssECI	CCNNGG	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	46
BstAFI	CTTAAG	1 cut(s)	736
BstC8I	GCNNGC	3 cut(s)	462, 669, 673
BstDEI	CTNAG	3 cut(s)	58, 597, 717
BstF5I	GGATG	3 cut(s)	6, 208, 422
BstMCI	CGRYCG	1 cut(s)	540
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 103, 656, 677, 686
BstSCI	CCNGG	1 cut(s)	445
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	3 cut(s)	317, 405, 624
BstX2I	RGATCY	2 cut(s)	171, 706
BstYI	RGATCY	2 cut(s)	171, 706
Bsu15I	ATCGAT	2 cut(s)	406, 540
BsuI	GTATCC	1 cut(s)	369
BsuTUI	ATCGAT	2 cut(s)	406, 540
BtgZI	GCGATG	2 cut(s)	505, 572
BtsCI	GGATG	3 cut(s)	6, 208, 422
BtsI	GCAGTG	2 cut(s)	561, 675
BtsIMutI	CAGTG	3 cut(s)	411, 561, 675
Cac8I	GCNNGC	3 cut(s)	462, 669, 673
CaiI	CAGNNNCTG	1 cut(s)	203
CciI	TCATGA	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	233
ClaI	ATCGAT	2 cut(s)	406, 540
Csp6I	GTAC	4 cut(s)	533, 550, 697, 721
CviAII	CATG	3 cut(s)	218, 431, 487
CviJI	RGCY	6 cut(s)	22, 152, 375, 464, 470, 689
CviKI_1	RGCY	6 cut(s)	22, 152, 375, 464, 470, 689
CviQI	GTAC	4 cut(s)	533, 550, 697, 721
DdeI	CTNAG	3 cut(s)	58, 597, 717
DraIII	CACNNNGTG	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	3 cut(s)	221, 434, 490
FaiI	YATR	8 cut(s)	27, 219, 297, 343, 432, 488, 714, 725
FatI	CATG	3 cut(s)	217, 430, 486
FauI	CCCGC	1 cut(s)	676
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	2 cut(s)	195, 429
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	3 cut(s)	138, 237, 672
GluI	GCNGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	144
HapII	CCGG	1 cut(s)	446
Hin1II	CATG	3 cut(s)	221, 434, 490
HinfI	GANTC	1 cut(s)	601
HpaII	CCGG	1 cut(s)	446
Hpy166II	GTNNAC	3 cut(s)	242, 552, 655
Hpy188I	TCNGA	2 cut(s)	336, 598
Hpy188III	TCNNGA	8 cut(s)	113, 123, 189, 224, 268, 431, 545, 683
Hpy8I	GTNNAC	3 cut(s)	242, 552, 655
Hpy99I	CGWCG	2 cut(s)	352, 609
HpyAV	CCTTC	1 cut(s)	670
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	7 cut(s)	75, 106, 206, 242, 566, 650, 730
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 103, 656, 677, 686
HpyF3I	CTNAG	3 cut(s)	58, 597, 717
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	3 cut(s)	221, 434, 490
Ksp22I	TGATCA	1 cut(s)	493
LguI	GCTCTTC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	2 cut(s)	84, 471
MaeI	CTAG	3 cut(s)	138, 237, 672
MaeII	ACGT	1 cut(s)	258
MboII	GAAGA	8 cut(s)	33, 143, 204, 322, 410, 434, 629, 640
MflI	RGATCY	2 cut(s)	171, 706
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	3 cut(s)	158, 228, 367
MnlI	CCTC	9 cut(s)	59, 119, 162, 372, 393, 438, 587, 594, 637
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	2 cut(s)	324, 737
MslI	CAYNNNNRTG	1 cut(s)	476
MspCI	CTTAAG	1 cut(s)	736
MspI	CCGG	1 cut(s)	446
MspR9I	CCNGG	1 cut(s)	447
MwoI	GCNNNNNNNGC	5 cut(s)	28, 103, 656, 677, 686
NciI	CCSGG	1 cut(s)	447
NheI	GCTAGC	1 cut(s)	671
NlaIII	CATG	3 cut(s)	221, 434, 490
NlaIV	GGNNCC	1 cut(s)	173
PagI	TCATGA	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	2 cut(s)	264, 528
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	601
PkrI	GCNGC	1 cut(s)	205
Ple19I	CGATCG	1 cut(s)	540
PsiI	TTATAA	1 cut(s)	27
Psp1406I	AACGTT	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	203
PsuI	RGATCY	2 cut(s)	171, 706
PvuI	CGATCG	1 cut(s)	540
RsaI	GTAC	4 cut(s)	534, 551, 698, 722
RsaNI	GTAC	4 cut(s)	533, 550, 697, 721
RseI	CAYNNNNRTG	1 cut(s)	476
SapI	GCTCTTC	1 cut(s)	46
SaqAI	TTAA	2 cut(s)	324, 737
SatI	GCNGC	1 cut(s)	204
Sau96I	GGNCC	1 cut(s)	233
ScaI	AGTACT	1 cut(s)	698
ScrFI	CCNGG	1 cut(s)	447
SduI	GDGCHC	1 cut(s)	244
SfaNI	GCATC	2 cut(s)	84, 471
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	736
SmoI	CTYRAG	1 cut(s)	736
Sse9I	AATT	3 cut(s)	158, 228, 367
SsiI	CCGC	2 cut(s)	669, 742
SspMI	CTAG	3 cut(s)	138, 237, 672
StyD4I	CCNGG	1 cut(s)	445
StyI	CCWWGG	1 cut(s)	212
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	4 cut(s)	267, 406, 540, 570
TasI	AATT	3 cut(s)	158, 228, 367
TatI	WGTACW	3 cut(s)	549, 696, 720
TfiI	GAWTC	1 cut(s)	601
Tru1I	TTAA	2 cut(s)	324, 737
Tru9I	TTAA	2 cut(s)	324, 737
TscAI	CASTG	3 cut(s)	418, 568, 682
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	4 cut(s)	168, 312, 367, 447
TspRI	CASTG	3 cut(s)	418, 568, 682
Vha464I	CTTAAG	1 cut(s)	736
VneI	GTGCAC	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	3 cut(s)	138, 237, 672
ZrmI	AGTACT	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.