Rorug01G0288500

Soluble inorganic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004908
Physical Location & Seq
Reverse (-)
40317731 .. 40318992
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0288500.1

Sequence Viewer

Length: 852 bp
ATGGTGAGAATTCGTAAGAACCTTCAGGTCTCACCGCTGTTTTTCAGCTCCAACGTAGCTCCGGAAGACTTCTGGCCACATATCTGCCGACTGAATCAATCTCCGTGGGACGTCAATCTCCCTCCAGAGTTGGAAGCTCAGGAAGATTTAAACGTGTATGGGAGCTTGAAAGGATCTATCGGAGCTACAGAAAGGGCAAAATATGTAGTGTTGCTTGAAATGTTGTTTTCTAATGCAAAACGCAGCGTTGCGTTGCCATCCAGGATGGATATTGACAAAGTGATTATCGATGTCGAAGAGGATTCAAAAGGGTTTGGTGAAGGCAATGAAATTGGGTTAAAGAAGCAGAAGATATGTAAAAAGAACGATGGAAAAGGGTGGAAGTGTAGAAAGGAAGTGAAGGAAGGGTACTCATTTTGCAATCACCACATAACCCTTATTAGGTCTTACCATAATACTGGCAGCAACAATGCTACTAGCAATGCTAACAAGTCCTTTTCTTTCAAGAAGCCCAAGGTGACCACGAGAGAGGCTCCTGAGGCCAAGGCGAAAAAGGGCTCGTCCTCGAAGTCTAATGACTATATATACTACTCGCTTTTTAGTCCATGGTGGAATCAGAATAGAAGGACTATAGTTGAGGAACAGACCGCGAAGAATATTGCTGTTGAAAATGGTGCTACTACATCCTCTACTAGTGTAGCTACTCCAAATCAAGATCCTCCATCACCCAAGGCTGGTAATCAGAATCAATCCGCTTATGTGGATGTCAATGAAGGCAACGATGATGGGAGCAACAAATGTCGCCGAAAGAGGATGAGGAAGCCTATGAAGGCTGTCCTTATTTCCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Pyrophosphatase

Protein Analysis

283

Amino Acids

31.73

Weight (kDa)

9.46

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRC PF08879 119 - 152 1.8e-09 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 114
AccII CGCG 1 cut(s) 650
AccIII TCCGGA 1 cut(s) 61
AciI CCGC 3 cut(s) 35, 648, 753
AclWI GGATC 2 cut(s) 181, 710
AcoI YGGCCR 1 cut(s) 74
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 8
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 2 cut(s) 441, 734
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 5 cut(s) 169, 218, 306, 505, 668
AhlI ACTAGT 1 cut(s) 692
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 7 cut(s) 48, 59, 137, 165, 185, 701, 849
AluI AGCT 7 cut(s) 48, 59, 137, 165, 185, 701, 849
Alw26I GTCTC 1 cut(s) 34
AlwI GGATC 2 cut(s) 181, 710
Aor13HI TCCGGA 1 cut(s) 61
AoxI GGCC 2 cut(s) 74, 540
ApeKI GCWGC 2 cut(s) 243, 462
ApoI RAATTY 1 cut(s) 9
AsuHPI GGTGA 6 cut(s) 16, 24, 329, 416, 529, 717
AxyI CCTNAGG 1 cut(s) 537
BalI TGGCCA 1 cut(s) 76
BanII GRGCYC 1 cut(s) 560
BarI GAAGNNNNNNTAC 2 cut(s) 392, 424
BauI CACGAG 1 cut(s) 523
BbsI GAAGAC 1 cut(s) 72
BbvI GCAGC 2 cut(s) 255, 474
BccI CCATC 5 cut(s) 259, 265, 362, 730, 779
BciT130I CCWGG 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 34
BcuI ACTAGT 1 cut(s) 692
BfaI CTAG 2 cut(s) 477, 693
BfmI CTRYAG 2 cut(s) 186, 630
BisI GCNGC 2 cut(s) 244, 463
BlsI GCNGC 2 cut(s) 245, 464
Bme1390I CCNGG 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 534
BmrFI CCNGG 1 cut(s) 262
BpiI GAAGAC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 517, 549
BpmI CTGGAG 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 138
Bsa29I ATCGAT 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 5 cut(s) 104, 513, 543, 605, 729
BsaWI WCCGGW 1 cut(s) 61
Bsc4I CCNNNNNNNGG 2 cut(s) 441, 734
Bse1I ACTGG 1 cut(s) 463
Bse21I CCTNAGG 1 cut(s) 537
Bse3DI GCAATG 2 cut(s) 331, 487
BseAI TCCGGA 1 cut(s) 61
BseBI CCWGG 1 cut(s) 262
BseCI ATCGAT 1 cut(s) 288
BseDI CCNNGG 5 cut(s) 104, 513, 543, 605, 729
BseGI GGATG 5 cut(s) 257, 270, 683, 769, 819
BseLI CCNNNNNNNGG 2 cut(s) 441, 734
BseMI GCAATG 2 cut(s) 331, 487
BseMII CTCAG 2 cut(s) 152, 528
BseNI ACTGG 1 cut(s) 463
BseXI GCAGC 2 cut(s) 255, 474
Bsh1236I CGCG 1 cut(s) 650
BshFI GGCC 2 cut(s) 76, 542
BshVI ATCGAT 1 cut(s) 288
BsiSI CCGG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 441, 734
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 2 cut(s) 76, 542
Bso31I GGTCTC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 560
Bsp13I TCCGGA 1 cut(s) 61
Bsp143I GATC 2 cut(s) 173, 715
Bsp19I CCATGG 1 cut(s) 605
BspACI CCGC 3 cut(s) 35, 648, 753
BspANI GGCC 2 cut(s) 76, 542
BspCNI CTCAG 2 cut(s) 151, 529
BspDI ATCGAT 1 cut(s) 288
BspEI TCCGGA 1 cut(s) 61
BspFNI CGCG 1 cut(s) 650
BspLI GGNNCC 1 cut(s) 534
BspPI GGATC 2 cut(s) 181, 710
BspTNI GGTCTC 1 cut(s) 34
BsrDI GCAATG 2 cut(s) 331, 487
BsrI ACTGG 1 cut(s) 463
BssECI CCNNGG 5 cut(s) 104, 513, 543, 605, 729
BssMI GATC 2 cut(s) 173, 715
BssNI GRCGYC 1 cut(s) 111
BssSI CACGAG 1 cut(s) 523
BssT1I CCWWGG 4 cut(s) 513, 543, 605, 729
Bst2BI CACGAG 1 cut(s) 523
Bst2UI CCWGG 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 291
BstACI GRCGYC 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 138, 537
BstDSI CCRYGG 2 cut(s) 104, 605
BstEII GGTNACC 1 cut(s) 517
BstF5I GGATG 5 cut(s) 257, 270, 683, 769, 819
BstFNI CGCG 1 cut(s) 650
BstKTI GATC 2 cut(s) 176, 718
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 2 cut(s) 173, 715
BstMWI GCNNNNNNNGC 1 cut(s) 539
BstNI CCWGG 1 cut(s) 262
BstPI GGTNACC 1 cut(s) 517
BstSCI CCNGG 1 cut(s) 260
BstSFI CTRYAG 2 cut(s) 186, 630
BstUI CGCG 1 cut(s) 650
BstV1I GCAGC 2 cut(s) 255, 474
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 2 cut(s) 173, 715
BstXI CCANNNNNNTGG 1 cut(s) 458
BstYI RGATCY 2 cut(s) 173, 715
Bsu15I ATCGAT 1 cut(s) 288
Bsu36I CCTNAGG 1 cut(s) 537
BsuRI GGCC 2 cut(s) 76, 542
BsuTUI ATCGAT 1 cut(s) 288
BtgI CCRYGG 2 cut(s) 104, 605
BtsCI GGATG 5 cut(s) 257, 270, 683, 769, 819
ClaI ATCGAT 1 cut(s) 288
Csp6I GTAC 1 cut(s) 409
CspCI CAANNNNNGTGG 2 cut(s) 86, 121
CviAII CATG 1 cut(s) 606
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 2 cut(s) 138, 537
DpnI GATC 2 cut(s) 175, 717
DpnII GATC 2 cut(s) 173, 715
DraI TTTAAA 1 cut(s) 150
EaeI YGGCCR 1 cut(s) 74
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco130I CCWWGG 4 cut(s) 513, 543, 605, 729
Eco24I GRGCYC 1 cut(s) 560
Eco31I GGTCTC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 8
Eco81I CCTNAGG 1 cut(s) 537
Eco91I GGTNACC 1 cut(s) 517
EcoO65I GGTNACC 1 cut(s) 517
EcoRI GAATTC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 260
EcoT14I CCWWGG 4 cut(s) 513, 543, 605, 729
EcoT38I GRGCYC 1 cut(s) 560
ErhI CCWWGG 4 cut(s) 513, 543, 605, 729
FaeI CATG 1 cut(s) 609
FaqI GGGAC 1 cut(s) 122
FatI CATG 1 cut(s) 605
Fnu4HI GCNGC 2 cut(s) 244, 463
FokI GGATG 5 cut(s) 244, 277, 670, 776, 826
FriOI GRGCYC 1 cut(s) 560
Fsp4HI GCNGC 2 cut(s) 244, 463
FspBI CTAG 2 cut(s) 477, 693
GluI GCNGC 2 cut(s) 244, 463
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 2 cut(s) 76, 542
HapII CCGG 1 cut(s) 62
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 1 cut(s) 609
HinfI GANTC 4 cut(s) 94, 302, 613, 745
HpaII CCGG 1 cut(s) 62
HphI GGTGA 6 cut(s) 16, 24, 329, 416, 529, 717
Hpy188I TCNGA 3 cut(s) 182, 618, 744
Hpy188III TCNNGA 6 cut(s) 62, 125, 140, 505, 536, 713
HpyAV CCTTC 7 cut(s) 32, 314, 394, 398, 618, 767, 823
HpyCH4IV ACGT 3 cut(s) 54, 111, 153
HpyCH4V TGCA 2 cut(s) 236, 420
HpyF10VI GCNNNNNNNGC 1 cut(s) 539
HpyF3I CTNAG 2 cut(s) 138, 537
HpySE526I ACGT 3 cut(s) 54, 111, 153
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 1 cut(s) 609
Kpn2I TCCGGA 1 cut(s) 61
Kzo9I GATC 2 cut(s) 173, 715
LmnI GCTCC 6 cut(s) 53, 64, 162, 182, 538, 789
Lsp1109I GCAGC 2 cut(s) 255, 474
MaeI CTAG 2 cut(s) 477, 693
MaeII ACGT 3 cut(s) 54, 111, 153
MaeIII GTNAC 1 cut(s) 517
MalI GATC 2 cut(s) 175, 717
MboI GATC 2 cut(s) 173, 715
MboII GAAGA 5 cut(s) 77, 155, 308, 361, 664
MflI RGATCY 2 cut(s) 173, 715
MhlI GDGCHC 1 cut(s) 560
MlsI TGGCCA 1 cut(s) 76
MluCI AATT 2 cut(s) 9, 330
MluNI TGGCCA 1 cut(s) 76
MmeI TCCRAC 2 cut(s) 75, 111
Mox20I TGGCCA 1 cut(s) 76
MroI TCCGGA 1 cut(s) 61
MscI TGGCCA 1 cut(s) 76
MseI TTAA 2 cut(s) 149, 338
Msp20I TGGCCA 1 cut(s) 76
MspA1I CMGCKG 2 cut(s) 37, 849
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 262
MvnI CGCG 1 cut(s) 650
MwoI GCNNNNNNNGC 1 cut(s) 539
NcoI CCATGG 1 cut(s) 605
NdeII GATC 2 cut(s) 173, 715
NlaIII CATG 1 cut(s) 609
NlaIV GGNNCC 1 cut(s) 534
NmuCI GTSAC 1 cut(s) 517
PfeI GAWTC 4 cut(s) 94, 302, 613, 745
PfoI TCCNGGA 1 cut(s) 260
PkrI GCNGC 2 cut(s) 245, 464
Psp6I CCWGG 1 cut(s) 260
PspEI GGTNACC 1 cut(s) 517
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 534
PsuI RGATCY 2 cut(s) 173, 715
PvuII CAGCTG 1 cut(s) 849
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
SaqAI TTAA 2 cut(s) 149, 338
SatI GCNGC 2 cut(s) 244, 463
Sau3AI GATC 2 cut(s) 173, 715
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 1 cut(s) 560
SfcI CTRYAG 2 cut(s) 186, 630
SpeI ACTAGT 1 cut(s) 692
Sse9I AATT 2 cut(s) 9, 330
SsiI CCGC 3 cut(s) 35, 648, 753
SspI AATATT 1 cut(s) 658
SspMI CTAG 2 cut(s) 477, 693
StyD4I CCNGG 1 cut(s) 260
StyI CCWWGG 4 cut(s) 513, 543, 605, 729
TaiI ACGT 3 cut(s) 57, 114, 156
TaqI TCGA 3 cut(s) 288, 294, 566
TasI AATT 2 cut(s) 9, 330
TfiI GAWTC 4 cut(s) 94, 302, 613, 745
Tru1I TTAA 2 cut(s) 149, 338
Tru9I TTAA 2 cut(s) 149, 338
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 2 cut(s) 243, 462
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 3 cut(s) 342, 786, 842
TspGWI ACGGA 1 cut(s) 93
XapI RAATTY 1 cut(s) 9
XspI CTAG 2 cut(s) 477, 693
ZraI GACGTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.