Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004908

Physical Location & Seq

Genomic Coordinates Forward (+)

15059079 .. 15061913

Gene Structure 2835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g17880.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCTGAGGAGGGTGATGAAAAACCACGAAAACCAACTCCCAAGTTAAACGAGAGGATTCTTTCATCTTTGTCAAGGAGATCAGTTGCTGCACATCCTTGGCACGATCTTGAAATTGGTCCTACAGCTCCACATATTTTCAATGTGGTTGTTGAGATTACAAAGGGAAGCAAAGTCAAATACGAACTTGACAAGAAGACAGGATTAATCAAGGTTGATCGAATTTTGTACTCGTCTGTGGTCTATCCTCATAACTATGGCTTCATCCCTCGCACCTTGTGTGAAGACAATGATCCACTTGATGTTCTAGTCCTCATGCAGGAACCTGTCCTTCCTGGTTGCTTTCTGCGAGCAAGAGCCATTGGAGTAATGCCTATGATTGATCAGGGTGAGAAAGATGACAAGATCATTGCAGTCTGTGCTGACGATCCAGAGTATACGCATTATACTGAATTGAATGACCTTCCCCCTCACCGCCTTTCTGAAATTCGTCGCTTCTTTGAAGACTACAAGAAAAATGAGAACAAAGAGGTCGCAGTTAACGCCTTTTTGCCTGCCACAGCTGCGCTTGAAGCTATCCAGTACTCCATGGATCTCTATGCCGAGTACATTCTGCACACCTTAAGGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019915 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051235 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

211

Amino Acids

24.05

Weight (kDa)

5.67

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyrophosphatase	PF00719	4 - 154	1.2e-59	Inorganic pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01050 AT1G01050 AT2G46860 AT4G01480 AT4G01480
fragaria_vesca	FvH4_7g17871 FvH4_7g17880 FvH4_7g17880 FvH4_7g17880
malus_domestica	MD01G1091200.v1.1 MD01G1091400.v1.1 MD07G1161500.v1.1
prunus_persica	Prupe.2G200700_v2.0.a1 Prupe.2G200700_v2.0.a1 Prupe.2G200800_v2.0.a1 Prupe.2G200800_v2.0.a1
pyrus_communis	pycom01g11550
rosa_chinensis	RchiOBHm_Chr1g0361351
rosa_laevigata	RLG00000027723 RLG00000027724
rosa_multiflora	Rmu_sc0002119.1_g000027
rosa_roxburghii	Rroxscaffold_4G00295030
rosa_rugosa	Rorug01G0288300 Rorug01G0288400 Rorug01G0288500 Rorug01G0288800
rosa_samantha	Rh1AG299600 Rh1BG263400
rosa_wichuraiana	Rw1G026520 Rw1G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	437
AciI	CCGC	2 cut(s)	475, 628
AclWI	GGATC	3 cut(s)	287, 422, 600
AcsI	RAATTY	2 cut(s)	222, 486
AdeI	CACNNNGTG	1 cut(s)	279
AfaI	GTAC	3 cut(s)	230, 584, 608
AfiI	CCNNNNNNNGG	2 cut(s)	319, 627
AflII	CTTAAG	1 cut(s)	622
AgsI	TTSAA	5 cut(s)	113, 142, 457, 503, 572
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	3 cut(s)	128, 563, 575
AluI	AGCT	3 cut(s)	128, 563, 575
AlwI	GGATC	3 cut(s)	287, 422, 600
AlwNI	CAGNNNCTG	1 cut(s)	89
ApeKI	GCWGC	2 cut(s)	89, 563
ApoI	RAATTY	2 cut(s)	222, 486
AseI	ATTAAT	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	3 cut(s)	26, 401, 464
AvaII	GGWCC	1 cut(s)	119
BbsI	GAAGAC	3 cut(s)	203, 291, 510
BbvI	GCAGC	2 cut(s)	76, 550
BciT130I	CCWGG	1 cut(s)	336
BclI	TGATCA	1 cut(s)	382
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	622
BisI	GCNGC	2 cut(s)	90, 564
BlsI	GCNGC	2 cut(s)	91, 565
BmcAI	AGTACT	1 cut(s)	584
Bme1390I	CCNGG	1 cut(s)	336
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	336
BpiI	GAAGAC	3 cut(s)	203, 291, 510
BsaJI	CCNNGG	2 cut(s)	98, 588
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 627
Bse1I	ACTGG	1 cut(s)	580
Bse3DI	GCAATG	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	98, 588
BseGI	GGATG	2 cut(s)	94, 264
BseLI	CCNNNNNNNGG	2 cut(s)	319, 627
BseMI	GCAATG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	580
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	76, 550
BsgI	GTGCAG	2 cut(s)	75, 599
BslI	CCNNNNNNNGG	2 cut(s)	319, 627
Bsp143I	GATC	8 cut(s)	80, 106, 217, 292, 382, 405, 427, 592
Bsp19I	CCATGG	1 cut(s)	588
BspACI	CCGC	2 cut(s)	475, 628
BspLI	GGNNCC	1 cut(s)	324
BspPI	GGATC	3 cut(s)	287, 422, 600
BspTI	CTTAAG	1 cut(s)	622
BsrDI	GCAATG	1 cut(s)	408
BsrI	ACTGG	1 cut(s)	580
BssECI	CCNNGG	2 cut(s)	98, 588
BssMI	GATC	8 cut(s)	80, 106, 217, 292, 382, 405, 427, 592
BssNAI	GTATAC	1 cut(s)	438
BssT1I	CCWWGG	2 cut(s)	98, 588
Bst1107I	GTATAC	1 cut(s)	438
Bst2UI	CCWGG	1 cut(s)	336
BstAFI	CTTAAG	1 cut(s)	622
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstC8I	GCNNGC	2 cut(s)	351, 555
BstDEI	CTNAG	1 cut(s)	6
BstDSI	CCRYGG	1 cut(s)	588
BstENI	CCTNNNNNAGG	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	94, 264
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	8 cut(s)	83, 109, 220, 295, 385, 408, 430, 595
BstMBI	GATC	8 cut(s)	80, 106, 217, 292, 382, 405, 427, 592
BstMWI	GCNNNNNNNGC	4 cut(s)	419, 542, 563, 572
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	76, 550
BstV2I	GAAGAC	3 cut(s)	203, 291, 510
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
BstZ17I	GTATAC	1 cut(s)	438
BtgI	CCRYGG	1 cut(s)	588
BtsCI	GGATG	2 cut(s)	94, 264
Cac8I	GCNNGC	2 cut(s)	351, 555
CaiI	CAGNNNCTG	1 cut(s)	89
CfoI	GCGC	1 cut(s)	568
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	3 cut(s)	229, 583, 607
CviAII	CATG	2 cut(s)	316, 589
CviJI	RGCY	5 cut(s)	128, 261, 359, 563, 575
CviKI_1	RGCY	5 cut(s)	128, 261, 359, 563, 575
CviQI	GTAC	3 cut(s)	229, 583, 607
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	8 cut(s)	82, 108, 219, 294, 384, 407, 429, 594
DpnII	GATC	8 cut(s)	80, 106, 217, 292, 382, 405, 427, 592
DraIII	CACNNNGTG	1 cut(s)	279
Eco130I	CCWWGG	2 cut(s)	98, 588
Eco47I	GGWCC	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	334
EcoT14I	CCWWGG	2 cut(s)	98, 588
ErhI	CCWWGG	2 cut(s)	98, 588
FaeI	CATG	2 cut(s)	319, 592
FaiI	YATR	9 cut(s)	135, 252, 258, 317, 377, 438, 447, 590, 600
FatI	CATG	2 cut(s)	315, 588
FbaI	TGATCA	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	437
Fnu4HI	GCNGC	2 cut(s)	90, 564
FokI	GGATG	2 cut(s)	81, 251
Fsp4HI	GCNGC	2 cut(s)	90, 564
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	2 cut(s)	90, 564
HhaI	GCGC	1 cut(s)	568
Hin1II	CATG	2 cut(s)	319, 592
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HinfI	GANTC	1 cut(s)	58
HpaI	GTTAAC	1 cut(s)	541
HphI	GGTGA	3 cut(s)	26, 401, 464
Hpy166II	GTNNAC	2 cut(s)	438, 541
Hpy188I	TCNGA	2 cut(s)	7, 484
Hpy188III	TCNNGA	2 cut(s)	110, 431
Hpy8I	GTNNAC	2 cut(s)	438, 541
Hpy99I	CGWCG	1 cut(s)	495
HpyAV	CCTTC	2 cut(s)	341, 473
HpyCH4V	TGCA	4 cut(s)	92, 319, 413, 616
HpyF10VI	GCNNNNNNNGC	4 cut(s)	419, 542, 563, 572
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	319, 592
HspAI	GCGC	1 cut(s)	566
Ksp22I	TGATCA	1 cut(s)	382
KspAI	GTTAAC	1 cut(s)	541
Kzo9I	GATC	8 cut(s)	80, 106, 217, 292, 382, 405, 427, 592
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	9 cut(s)	186, 305, 321, 339, 348, 371, 444, 567, 593
Lsp1109I	GCAGC	2 cut(s)	76, 550
MaeI	CTAG	1 cut(s)	308
MalI	GATC	8 cut(s)	82, 108, 219, 294, 384, 407, 429, 594
MboI	GATC	8 cut(s)	80, 106, 217, 292, 382, 405, 427, 592
MboII	GAAGA	3 cut(s)	208, 296, 515
MflI	RGATCY	1 cut(s)	592
MluCI	AATT	4 cut(s)	114, 222, 452, 486
MnlI	CCTC	7 cut(s)	4, 48, 258, 279, 323, 480, 523
MseI	TTAA	4 cut(s)	47, 206, 540, 623
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	563
MspCI	CTTAAG	1 cut(s)	622
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	4 cut(s)	419, 542, 563, 572
NcoI	CCATGG	1 cut(s)	588
NdeII	GATC	8 cut(s)	80, 106, 217, 292, 382, 405, 427, 592
NlaIII	CATG	2 cut(s)	319, 592
NlaIV	GGNNCC	1 cut(s)	324
NmeAIII	GCCGAG	1 cut(s)	628
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	91, 565
PshBI	ATTAAT	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	592
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	3 cut(s)	230, 584, 608
RsaNI	GTAC	3 cut(s)	229, 583, 607
RseI	CAYNNNNRTG	1 cut(s)	255
SaqAI	TTAA	4 cut(s)	47, 206, 540, 623
SatI	GCNGC	2 cut(s)	90, 564
Sau3AI	GATC	8 cut(s)	80, 106, 217, 292, 382, 405, 427, 592
Sau96I	GGNCC	1 cut(s)	119
ScaI	AGTACT	1 cut(s)	584
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	9 cut(s)	130, 216, 278, 328, 465, 534, 565, 577, 623
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	622
SmoI	CTYRAG	1 cut(s)	622
Sse9I	AATT	4 cut(s)	114, 222, 452, 486
SsiI	CCGC	2 cut(s)	475, 628
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	334
StyI	CCWWGG	2 cut(s)	98, 588
TaqI	TCGA	1 cut(s)	220
TasI	AATT	4 cut(s)	114, 222, 452, 486
TatI	WGTACW	3 cut(s)	228, 582, 606
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	4 cut(s)	47, 206, 540, 623
Tru9I	TTAA	4 cut(s)	47, 206, 540, 623
TseI	GCWGC	2 cut(s)	89, 563
TspDTI	ATGAA	3 cut(s)	33, 54, 253
Vha464I	CTTAAG	1 cut(s)	622
VpaK11BI	GGWCC	1 cut(s)	119
VspI	ATTAAT	1 cut(s)	206
XagI	CCTNNNNNAGG	1 cut(s)	317
XapI	RAATTY	2 cut(s)	222, 486
XmiI	GTMKAC	1 cut(s)	437
XspI	CTAG	1 cut(s)	308
ZrmI	AGTACT	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.