Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004908

Physical Location & Seq

Genomic Coordinates Forward (+)

626069 .. 628070

Gene Structure 2002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G01480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAATGGAGAAGAAGTGAAAACGAGTCAACCTCAGAAGAAGCTTCAGAACCCTACTCCACGTTTAAACGAGAGGATTCTCTCATCTTTGTCTAAGAGATCGGTTGCTGCACATCCATGGCATGATCTTGAAATCGGACCTGGAGCTCCAGTGATTTTCAATGTGGTTATTGAGATCTCAAAGGGGAGCAAAGTCAAATATGAACTTGACAAAAAAACAGGTCTCATCAAGGTTGATAGGATTCTTTATTCTTCGGTTGTGTATCCTCACAACTACGGGTTTGTCCCACGCACACTATGTGAAGACAATGACCCTATAGATGTTTTAGTTATCATGCAGGAGCCTGTGCTTCCGGGTTGTTTTCTTCGCGCCCGAGCTATTGGTTTAATGCCTATGATTGACCAGGGTGAAAAAGATGACAAGATCATTGCAGTTTGTGTTGATGATCCTGAGTATAAGCACATCACTAACATCAATGAACTTCCTCCTCATCGTCTTTCTGAAATCCGTCGATTCTTTGAAGACTACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAATGATTTTCTACAACCTGGTCCTGCTATTGAAGCCATTCAGTACTCAATGGATCTTTACGCTGAGTACATTCTTCACACCCTGAGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019915 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051235 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

216

Amino Acids

24.71

Weight (kDa)

6.09

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyrophosphatase	PF00719	55 - 206	1.9e-58	Inorganic pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01050 AT1G01050 AT2G46860 AT4G01480 AT4G01480
fragaria_vesca	FvH4_7g17871 FvH4_7g17880 FvH4_7g17880 FvH4_7g17880
malus_domestica	MD01G1091200.v1.1 MD01G1091400.v1.1 MD07G1161500.v1.1
prunus_persica	Prupe.2G200700_v2.0.a1 Prupe.2G200700_v2.0.a1 Prupe.2G200800_v2.0.a1 Prupe.2G200800_v2.0.a1
pyrus_communis	pycom01g11550
rosa_chinensis	RchiOBHm_Chr1g0361351
rosa_laevigata	RLG00000027723 RLG00000027724
rosa_multiflora	Rmu_sc0002119.1_g000027
rosa_roxburghii	Rroxscaffold_4G00295030
rosa_rugosa	Rorug01G0288300 Rorug01G0288400 Rorug01G0288500 Rorug01G0288800
rosa_samantha	Rh1AG299600 Rh1BG263400
rosa_wichuraiana	Rw1G026520 Rw1G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	369
AclWI	GGATC	2 cut(s)	440, 618
AcuI	CTGAAG	1 cut(s)	29
AdeI	CACNNNGTG	1 cut(s)	299
AfaI	GTAC	2 cut(s)	602, 626
AgsI	TTSAA	4 cut(s)	131, 160, 521, 590
AjnI	CCWGG	3 cut(s)	139, 402, 574
AluBI	AGCT	3 cut(s)	43, 146, 377
AluI	AGCT	3 cut(s)	43, 146, 377
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	2 cut(s)	440, 618
Ama87I	CYCGRG	1 cut(s)	372
ApeKI	GCWGC	1 cut(s)	107
Asp700I	GAANNNNTTC	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	2 cut(s)	137, 578
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	419
AvaI	CYCGRG	1 cut(s)	372
AvaII	GGWCC	2 cut(s)	137, 578
AxyI	CCTNAGG	1 cut(s)	641
BanII	GRGCYC	1 cut(s)	148
BbsI	GAAGAC	2 cut(s)	309, 528
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	94
BciT130I	CCWGG	3 cut(s)	141, 404, 576
BciVI	GTATCC	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	315
BfuI	GTATCC	1 cut(s)	273
BglII	AGATCT	1 cut(s)	174
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
BmcAI	AGTACT	1 cut(s)	602
Bme1390I	CCNGG	4 cut(s)	141, 354, 404, 576
Bme18I	GGWCC	2 cut(s)	137, 578
BmeT110I	CYCGRG	1 cut(s)	372
BmgT120I	GGNCC	2 cut(s)	137, 578
BmiI	GGNNCC	1 cut(s)	342
BmrFI	CCNGG	4 cut(s)	141, 354, 404, 576
BpiI	GAAGAC	2 cut(s)	309, 528
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
BpmI	CTGGAG	2 cut(s)	132, 162
BpuMI	CCSGG	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	116, 403
BsaXI	ACNNNNNCTCC	3 cut(s)	30, 135, 165
Bse1I	ACTGG	1 cut(s)	149
Bse21I	CCTNAGG	1 cut(s)	641
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	3 cut(s)	141, 404, 576
BseDI	CCNNGG	2 cut(s)	116, 403
BseGI	GGATG	1 cut(s)	112
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	4 cut(s)	47, 441, 612, 632
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	477
BseXI	GCAGC	1 cut(s)	94
BsgI	GTGCAG	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	353
BslFI	GGGAC	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	269
Bso31I	GGTCTC	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	6 cut(s)	98, 124, 174, 423, 445, 610
Bsp19I	CCATGG	1 cut(s)	116
BspCNI	CTCAG	4 cut(s)	46, 442, 613, 633
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	342
BspPI	GGATC	2 cut(s)	440, 618
BspTNI	GGTCTC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	116, 403
BssMI	GATC	6 cut(s)	98, 124, 174, 423, 445, 610
BssT1I	CCWWGG	1 cut(s)	116
Bst2UI	CCWGG	3 cut(s)	141, 404, 576
BstDEI	CTNAG	5 cut(s)	33, 93, 450, 621, 641
BstDSI	CCRYGG	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	112
BstFNI	CGCG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	6 cut(s)	101, 127, 177, 426, 448, 613
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	6 cut(s)	98, 124, 174, 423, 445, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	590
BstNI	CCWGG	3 cut(s)	141, 404, 576
BstSCI	CCNGG	4 cut(s)	139, 352, 402, 574
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	2 cut(s)	309, 528
BstX2I	RGATCY	2 cut(s)	174, 610
BstYI	RGATCY	2 cut(s)	174, 610
Bsu36I	CCTNAGG	1 cut(s)	641
BsuI	GTATCC	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	2 cut(s)	156, 561
CfoI	GCGC	1 cut(s)	371
Cfr13I	GGNCC	2 cut(s)	137, 578
CsiI	ACCWGGT	1 cut(s)	574
Csp6I	GTAC	2 cut(s)	601, 625
CviAII	CATG	3 cut(s)	117, 122, 334
CviJI	RGCY	5 cut(s)	43, 146, 343, 377, 593
CviKI_1	RGCY	5 cut(s)	43, 146, 343, 377, 593
CviQI	GTAC	2 cut(s)	601, 625
DdeI	CTNAG	5 cut(s)	33, 93, 450, 621, 641
DpnI	GATC	6 cut(s)	100, 126, 176, 425, 447, 612
DpnII	GATC	6 cut(s)	98, 124, 174, 423, 445, 610
DraI	TTTAAA	1 cut(s)	66
DraIII	CACNNNGTG	1 cut(s)	299
Ecl136II	GAGCTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	227
Eco47I	GGWCC	2 cut(s)	137, 578
Eco53kI	GAGCTC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	29
Eco81I	CCTNAGG	1 cut(s)	641
Eco88I	CYCGRG	1 cut(s)	372
EcoICRI	GAGCTC	1 cut(s)	146
EcoRII	CCWGG	3 cut(s)	139, 402, 574
EcoT14I	CCWWGG	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	116
FaeI	CATG	3 cut(s)	120, 125, 337
FaiI	YATR	8 cut(s)	118, 123, 201, 298, 317, 335, 395, 456
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	3 cut(s)	116, 121, 333
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	99
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	108
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	1 cut(s)	108
GsuI	CTGGAG	2 cut(s)	132, 162
HapII	CCGG	1 cut(s)	353
HhaI	GCGC	1 cut(s)	371
Hin1II	CATG	3 cut(s)	120, 125, 337
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	4 cut(s)	25, 76, 241, 513
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	4 cut(s)	36, 48, 137, 502
Hpy188III	TCNNGA	2 cut(s)	128, 449
Hpy8I	GTNNAC	1 cut(s)	29
Hpy99I	CGWCG	1 cut(s)	513
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	4 cut(s)	110, 337, 431, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	590
HpyF3I	CTNAG	5 cut(s)	33, 93, 450, 621, 641
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	3 cut(s)	120, 125, 337
HspAI	GCGC	1 cut(s)	369
Kzo9I	GATC	6 cut(s)	98, 124, 174, 423, 445, 610
LmnI	GCTCC	4 cut(s)	143, 151, 186, 340
Lsp1109I	GCAGC	1 cut(s)	94
MabI	ACCWGGT	1 cut(s)	574
MaeII	ACGT	1 cut(s)	61
MalI	GATC	6 cut(s)	100, 126, 176, 425, 447, 612
MboI	GATC	6 cut(s)	98, 124, 174, 423, 445, 610
MboII	GAAGA	8 cut(s)	23, 49, 243, 314, 356, 533, 544, 623
MflI	RGATCY	2 cut(s)	174, 610
MhlI	GDGCHC	1 cut(s)	148
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	6 cut(s)	42, 66, 276, 495, 498, 636
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	2 cut(s)	65, 386
MslI	CAYNNNNRTG	1 cut(s)	115
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	4 cut(s)	141, 354, 404, 576
MssI	GTTTAAAC	1 cut(s)	66
MvaI	CCWGG	3 cut(s)	141, 404, 576
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	590
NciI	CCSGG	1 cut(s)	354
NcoI	CCATGG	1 cut(s)	116
NdeII	GATC	6 cut(s)	98, 124, 174, 423, 445, 610
NlaIII	CATG	3 cut(s)	120, 125, 337
NlaIV	GGNNCC	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	3 cut(s)	76, 241, 513
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	1 cut(s)	33
PmeI	GTTTAAAC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	33
Psp124BI	GAGCTC	1 cut(s)	148
Psp6I	CCWGG	3 cut(s)	139, 402, 574
PspGI	CCWGG	3 cut(s)	139, 402, 574
PspN4I	GGNNCC	1 cut(s)	342
PspPI	GGNCC	2 cut(s)	137, 578
PsuI	RGATCY	2 cut(s)	174, 610
RsaI	GTAC	2 cut(s)	602, 626
RsaNI	GTAC	2 cut(s)	601, 625
RseI	CAYNNNNRTG	1 cut(s)	115
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	65, 386
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	6 cut(s)	98, 124, 174, 423, 445, 610
Sau96I	GGNCC	2 cut(s)	137, 578
ScaI	AGTACT	1 cut(s)	602
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	4 cut(s)	141, 354, 404, 576
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	9 cut(s)	34, 45, 64, 142, 148, 223, 234, 379, 577
SexAI	ACCWGGT	1 cut(s)	574
SfcI	CTRYAG	1 cut(s)	315
SinI	GGWCC	2 cut(s)	137, 578
SmiMI	CAYNNNNRTG	1 cut(s)	115
SstI	GAGCTC	1 cut(s)	148
StyD4I	CCNGG	4 cut(s)	139, 352, 402, 574
StyI	CCWWGG	1 cut(s)	116
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	511
TatI	WGTACW	2 cut(s)	600, 624
TfiI	GAWTC	3 cut(s)	76, 241, 513
Tru1I	TTAA	2 cut(s)	65, 386
Tru9I	TTAA	2 cut(s)	65, 386
TscAI	CASTG	2 cut(s)	156, 561
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	3 cut(s)	17, 216, 492
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	2 cut(s)	156, 561
VpaK11BI	GGWCC	2 cut(s)	137, 578
XmnI	GAANNNNTTC	1 cut(s)	594
ZrmI	AGTACT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.