Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004908

Physical Location & Seq

Genomic Coordinates Forward (+)

19253670 .. 19255328

Gene Structure 1659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGTGAAGAAGCATATGAAGAAACTCAGGAATCAAGTCAATCTCCTCGTCCGGTTCCAAAACTGAACGAGAGGATTCTCTCAACACTATCCAGGAGATCTGTAGCTGCACATCCATGGCACGACCTTGAGATTGGTCCTGAAGCTCCATTGGTCTTCAATGTGGTGGTTGAGATCACAAAGGGAAGCAAAGTGAAATATGAACTCGACAAAAAGACCGGTCTTATCAAGGTTGACCGGATCTTGTACTCCTCCGTTGTTTATCCACACAATTACGGATTCATCCCACGGACATTGTGTGAAGACAACGATCCTCTTGATGTCCTTGTCCTTATGCAGGAACCAGTGCTTCCCGGATGTTTCCTCCGTGCTAGAGCCATTGGATTAATGCCCATGATTGATCAGGGAGAGAAAGACGACAAAATCATAGCCGTATGTGCTGATGATCCAGAGTACAAACATTTCACAGACATCAAACAACTCGCTCCTCATCGTCTCCAAGAAATCCGCCGTTTCTTCGAAGACTATAAGAAGAACGAGAACAAGAAAGTGGCTGTCAACGATTTCTTGCCATCAGAGAGTGCACATGAAGCTATTCAGTACTCCATGGATCTATACGCTGAGTATATTCTCCACACGTTGAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004427 GO:0005488 GO:0006082 GO:0006793 GO:0008150 GO:0008152 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0043167 GO:0043169 GO:0043436 GO:0044237 GO:0044281 GO:0046872 GO:0071344 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

216

Amino Acids

24.92

Weight (kDa)

5.55

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyrophosphatase	PF00719	55 - 206	2.7e-59	Inorganic pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01050 AT1G01050 AT2G46860 AT4G01480 AT4G01480
fragaria_vesca	FvH4_7g17871 FvH4_7g17880 FvH4_7g17880 FvH4_7g17880
malus_domestica	MD01G1091200.v1.1 MD01G1091400.v1.1 MD07G1161500.v1.1
prunus_persica	Prupe.2G200700_v2.0.a1 Prupe.2G200700_v2.0.a1 Prupe.2G200800_v2.0.a1 Prupe.2G200800_v2.0.a1
pyrus_communis	pycom01g11550
rosa_chinensis	RchiOBHm_Chr1g0361351
rosa_laevigata	RLG00000027723 RLG00000027724
rosa_multiflora	Rmu_sc0002119.1_g000027
rosa_roxburghii	Rroxscaffold_4G00295030
rosa_rugosa	Rorug01G0288300 Rorug01G0288400 Rorug01G0288500 Rorug01G0288800
rosa_samantha	Rh1AG299600 Rh1BG263400
rosa_wichuraiana	Rw1G026520 Rw1G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	508
AclWI	GGATC	4 cut(s)	248, 305, 440, 618
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	3 cut(s)	248, 455, 602
AfiI	CCNNNNNNNGG	1 cut(s)	337
AflIII	ACRYGT	1 cut(s)	636
AgeI	ACCGGT	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	3 cut(s)	107, 146, 593
AluI	AGCT	3 cut(s)	107, 146, 593
Alw21I	GWGCWC	1 cut(s)	586
Alw26I	GTCTC	1 cut(s)	500
Alw44I	GTGCAC	1 cut(s)	582
AlwI	GGATC	4 cut(s)	248, 305, 440, 618
ApaLI	GTGCAC	1 cut(s)	582
ApeKI	GCWGC	1 cut(s)	107
AseI	ATTAAT	1 cut(s)	386
AsiGI	ACCGGT	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	594
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	1 cut(s)	354
AsuII	TTCGAA	1 cut(s)	519
AvaII	GGWCC	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	586
BbsI	GAAGAC	3 cut(s)	148, 309, 528
Bbv12I	GWGCWC	1 cut(s)	586
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	1 cut(s)	580
BceAI	ACGGC	2 cut(s)	416, 495
BciT130I	CCWGG	1 cut(s)	94
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	500
BfaI	CTAG	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	102
BglII	AGATCT	1 cut(s)	98
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
BmcAI	AGTACT	1 cut(s)	602
Bme1390I	CCNGG	2 cut(s)	94, 354
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	57, 342
BmrFI	CCNGG	2 cut(s)	94, 354
BpiI	GAAGAC	3 cut(s)	148, 309, 528
Bpu14I	TTCGAA	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	354
BsaJI	CCNNGG	3 cut(s)	116, 287, 606
BsaWI	WCCGGW	3 cut(s)	52, 218, 237
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	3 cut(s)	116, 287, 606
BseGI	GGATG	3 cut(s)	112, 282, 362
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	2 cut(s)	41, 612
BseNI	ACTGG	1 cut(s)	344
BseRI	GAGGAG	3 cut(s)	36, 241, 477
BseSI	GKGCMC	1 cut(s)	586
BseXI	GCAGC	1 cut(s)	94
BsgI	GTGCAG	1 cut(s)	93
BshTI	ACCGGT	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	586
BsiSI	CCGG	4 cut(s)	53, 219, 238, 354
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	1 cut(s)	500
BsmBI	CGTCTC	1 cut(s)	500
Bsp119I	TTCGAA	1 cut(s)	519
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp143I	GATC	7 cut(s)	98, 174, 240, 310, 400, 445, 610
Bsp19I	CCATGG	2 cut(s)	116, 606
BspACI	CCGC	1 cut(s)	508
BspCNI	CTCAG	2 cut(s)	40, 613
BspLI	GGNNCC	2 cut(s)	57, 342
BspPI	GGATC	4 cut(s)	248, 305, 440, 618
BspT104I	TTCGAA	1 cut(s)	519
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	344
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	116, 287, 606
BssMI	GATC	7 cut(s)	98, 174, 240, 310, 400, 445, 610
BssT1I	CCWWGG	2 cut(s)	116, 606
Bst2UI	CCWGG	1 cut(s)	94
BstBI	TTCGAA	1 cut(s)	519
BstDEI	CTNAG	2 cut(s)	27, 621
BstDSI	CCRYGG	3 cut(s)	116, 287, 606
BstENI	CCTNNNNNAGG	1 cut(s)	335
BstF5I	GGATG	3 cut(s)	112, 282, 362
BstKTI	GATC	7 cut(s)	101, 177, 243, 313, 403, 448, 613
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	7 cut(s)	98, 174, 240, 310, 400, 445, 610
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 590
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	92, 352
BstSFI	CTRYAG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	586
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	3 cut(s)	148, 309, 528
BstX2I	RGATCY	3 cut(s)	98, 240, 610
BstYI	RGATCY	3 cut(s)	98, 240, 610
BtgI	CCRYGG	3 cut(s)	116, 287, 606
BtsCI	GGATG	3 cut(s)	112, 282, 362
BtsIMutI	CAGTG	1 cut(s)	351
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	137
Csp6I	GTAC	3 cut(s)	247, 454, 601
CspAI	ACCGGT	1 cut(s)	218
CspCI	CAANNNNNGTGG	2 cut(s)	276, 311
CviAII	CATG	4 cut(s)	117, 394, 587, 607
CviJI	RGCY	6 cut(s)	107, 146, 377, 431, 554, 593
CviKI_1	RGCY	6 cut(s)	107, 146, 377, 431, 554, 593
CviQI	GTAC	3 cut(s)	247, 454, 601
DdeI	CTNAG	2 cut(s)	27, 621
DpnI	GATC	7 cut(s)	100, 176, 242, 312, 402, 447, 612
DpnII	GATC	7 cut(s)	98, 174, 240, 310, 400, 445, 610
EciI	GGCGGA	1 cut(s)	497
Eco130I	CCWWGG	2 cut(s)	116, 606
Eco47I	GGWCC	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	162
EcoNI	CCTNNNNNAGG	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	92
EcoT14I	CCWWGG	2 cut(s)	116, 606
ErhI	CCWWGG	2 cut(s)	116, 606
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	4 cut(s)	120, 397, 590, 610
FatI	CATG	4 cut(s)	116, 393, 586, 606
FauNDI	CATATG	1 cut(s)	16
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	3 cut(s)	99, 269, 369
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	372
GluI	GCNGC	1 cut(s)	108
HapII	CCGG	4 cut(s)	53, 219, 238, 354
Hin1II	CATG	4 cut(s)	120, 397, 590, 610
HincII	GTYRAC	2 cut(s)	235, 559
HindII	GTYRAC	2 cut(s)	235, 559
HinfI	GANTC	3 cut(s)	32, 76, 279
HpaII	CCGG	4 cut(s)	53, 219, 238, 354
Hpy166II	GTNNAC	3 cut(s)	235, 559, 584
Hpy188I	TCNGA	1 cut(s)	577
Hpy188III	TCNNGA	4 cut(s)	29, 140, 317, 449
Hpy8I	GTNNAC	3 cut(s)	235, 559, 584
HpyCH4IV	ACGT	1 cut(s)	638
HpyCH4V	TGCA	3 cut(s)	110, 337, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 590
HpyF3I	CTNAG	2 cut(s)	27, 621
HpySE526I	ACGT	1 cut(s)	638
Hsp92II	CATG	4 cut(s)	120, 397, 590, 610
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	7 cut(s)	98, 174, 240, 310, 400, 445, 610
LmnI	GCTCC	2 cut(s)	151, 490
Lsp1109I	GCAGC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	1 cut(s)	638
MalI	GATC	7 cut(s)	100, 176, 242, 312, 402, 447, 612
MboI	GATC	7 cut(s)	98, 174, 240, 310, 400, 445, 610
MboII	GAAGA	7 cut(s)	20, 32, 148, 314, 508, 533, 544
MflI	RGATCY	3 cut(s)	98, 240, 610
MhlI	GDGCHC	1 cut(s)	586
MluCI	AATT	1 cut(s)	271
MnlI	CCTC	7 cut(s)	57, 66, 262, 324, 374, 498, 636
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	1 cut(s)	386
MslI	CAYNNNNRTG	1 cut(s)	115
MspI	CCGG	4 cut(s)	53, 219, 238, 354
MspR9I	CCNGG	2 cut(s)	94, 354
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	437, 590
NciI	CCSGG	1 cut(s)	354
NcoI	CCATGG	2 cut(s)	116, 606
NdeI	CATATG	1 cut(s)	16
NdeII	GATC	7 cut(s)	98, 174, 240, 310, 400, 445, 610
NlaIII	CATG	4 cut(s)	120, 397, 590, 610
NlaIV	GGNNCC	2 cut(s)	57, 342
NspV	TTCGAA	1 cut(s)	519
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	3 cut(s)	32, 76, 279
PfoI	TCCNGGA	2 cut(s)	92, 352
PinAI	ACCGGT	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	109
PshBI	ATTAAT	1 cut(s)	386
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	57, 342
PspPI	GGNCC	1 cut(s)	137
PsuI	RGATCY	3 cut(s)	98, 240, 610
RsaI	GTAC	3 cut(s)	248, 455, 602
RsaNI	GTAC	3 cut(s)	247, 454, 601
RseI	CAYNNNNRTG	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	7 cut(s)	98, 174, 240, 310, 400, 445, 610
Sau96I	GGNCC	1 cut(s)	137
ScaI	AGTACT	1 cut(s)	602
ScrFI	CCNGG	2 cut(s)	94, 354
SduI	GDGCHC	1 cut(s)	586
SetI	ASST	6 cut(s)	109, 129, 148, 234, 595, 641
SfcI	CTRYAG	1 cut(s)	102
SfuI	TTCGAA	1 cut(s)	519
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	115
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	271
SsiI	CCGC	1 cut(s)	508
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	2 cut(s)	92, 352
StyI	CCWWGG	2 cut(s)	116, 606
TaiI	ACGT	1 cut(s)	641
TaqI	TCGA	2 cut(s)	207, 519
TasI	AATT	1 cut(s)	271
TatI	WGTACW	3 cut(s)	246, 453, 600
TfiI	GAWTC	3 cut(s)	32, 76, 279
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TscAI	CASTG	1 cut(s)	351
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	4 cut(s)	33, 216, 271, 603
TspGWI	ACGGA	4 cut(s)	244, 291, 304, 356
TspRI	CASTG	1 cut(s)	351
VneI	GTGCAC	1 cut(s)	582
VpaK11BI	GGWCC	1 cut(s)	137
VspI	ATTAAT	1 cut(s)	386
XagI	CCTNNNNNAGG	1 cut(s)	335
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	1 cut(s)	372
ZrmI	AGTACT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.