FvH4_7g17871

Soluble inorganic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004908
Physical Location & Seq
Forward (+)
15056046 .. 15058145
2100 bp
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UTR
Exon/CDS
Intron
FvH4_7g17871.t1

Sequence Viewer

Length: 618 bp
ATGACTGAAGAAAAAAAACTTACTCCGAAATTAAATGAGAGGATTCTTTCATCTTTGTCAAGGAAATCAGTAGCTGCACATCCTTGGCATGATCTTGAAATTGGACCATCAGCTCCCCAGATTTTCAATGTTGTTGTTGAGATATCACAAGGAAGCAAAGTCAAATATGAACTTGACAAGAAAACAGGACTAATTAAGGTTGATAGGATTTTGTACTCGTCTGTGGTCTATCCTCATAACTATGGTTTCATCCCTCGCACCTTGTGTGAAGACAATGATCCACTGGATGTTTTAGTTCTCATGCAGGAACCTGTTATCCCGGGGTCATTTCTGCGTGCCAAAGCCATCGGATTAATGCCCATGATTGACCAGGGAGAGAAAGATGATAAGATTATCGCAGTATGTGCTGATGATCCAGCCTATAATCATTACAATGACATTGGGGAGCTTCCTCCTCATCGCCTCACTGAGATTCGTCGCTTCTTTGAAGACTACAAGAAGAATGAACACAAAGAAGTTGCAGTGGACGAGTTTTTGCCTTGCTCAACTGCCGCAGAGGCTATTCAGTACTCGATGCAAGTCTATATTACAGCACAACAAGTTCTTGACTCCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Pyrophosphatase

Protein Analysis

206

Amino Acids

23.24

Weight (kDa)

5.27

Isoelectric Point (pI)

36.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyrophosphatase PF00719 44 - 195 6.6e-58 Inorganic pyrophosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 552
AclWI GGATC 2 cut(s) 272, 407
AcuI CTGAAG 1 cut(s) 27
AdeI CACNNNGTG 1 cut(s) 264
AfaI GTAC 2 cut(s) 215, 569
AgsI TTSAA 3 cut(s) 98, 127, 488
AjnI CCWGG 1 cut(s) 369
AloI GAACNNNNNNTCC 2 cut(s) 300, 332
AluBI AGCT 3 cut(s) 74, 113, 448
AluI AGCT 3 cut(s) 74, 113, 448
AlwI GGATC 2 cut(s) 272, 407
AlwNI CAGNNNCTG 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 319
ApeKI GCWGC 1 cut(s) 74
AseI ATTAAT 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 104
AsuC2I CCSGG 2 cut(s) 320, 321
AvaI CYCGRG 1 cut(s) 319
AvaII GGWCC 1 cut(s) 104
BbsI GAAGAC 2 cut(s) 276, 495
BbvI GCAGC 1 cut(s) 61
BccI CCATC 2 cut(s) 115, 353
BciT130I CCWGG 1 cut(s) 371
BcnI CCSGG 2 cut(s) 320, 321
BglI GCCNNNNNGGC 1 cut(s) 557
BisI GCNGC 2 cut(s) 75, 552
BlsI GCNGC 2 cut(s) 76, 553
BmcAI AGTACT 1 cut(s) 569
Bme1390I CCNGG 3 cut(s) 320, 321, 371
Bme18I GGWCC 1 cut(s) 104
BmeT110I CYCGRG 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 3 cut(s) 320, 321, 371
BmsI GCATC 1 cut(s) 564
BpiI GAAGAC 2 cut(s) 276, 495
BpuMI CCSGG 2 cut(s) 320, 321
BsaJI CCNNGG 4 cut(s) 83, 319, 320, 370
Bse1I ACTGG 1 cut(s) 288
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 4 cut(s) 83, 319, 320, 370
BseGI GGATG 3 cut(s) 79, 249, 292
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 1 cut(s) 288
BseRI GAGGAG 1 cut(s) 444
BseXI GCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 60
BsiHKCI CYCGRG 1 cut(s) 319
BsiSI CCGG 1 cut(s) 320
BsoBI CYCGRG 1 cut(s) 319
Bsp143I GATC 3 cut(s) 91, 277, 412
BspACI CCGC 1 cut(s) 552
BspCNI CTCAG 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 2 cut(s) 272, 407
BsrI ACTGG 1 cut(s) 288
BssECI CCNNGG 4 cut(s) 83, 319, 320, 370
BssMI GATC 3 cut(s) 91, 277, 412
BssT1I CCWWGG 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 371
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 468
BstF5I GGATG 3 cut(s) 79, 249, 292
BstKTI GATC 3 cut(s) 94, 280, 415
BstMBI GATC 3 cut(s) 91, 277, 412
BstMWI GCNNNNNNNGC 2 cut(s) 404, 557
BstNI CCWGG 1 cut(s) 371
BstSCI CCNGG 3 cut(s) 318, 319, 369
BstV1I GCAGC 1 cut(s) 61
BstV2I GAAGAC 2 cut(s) 276, 495
BtgZI GCGATG 1 cut(s) 443
BtsCI GGATG 3 cut(s) 79, 249, 292
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 3 cut(s) 281, 465, 528
Cac8I GCNNGC 1 cut(s) 336
CaiI CAGNNNCTG 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 104
Cfr9I CCCGGG 1 cut(s) 319
Csp6I GTAC 2 cut(s) 214, 568
CviAII CATG 3 cut(s) 89, 301, 361
CviJI RGCY 6 cut(s) 74, 113, 344, 419, 448, 560
CviKI_1 RGCY 6 cut(s) 74, 113, 344, 419, 448, 560
CviQI GTAC 2 cut(s) 214, 568
DdeI CTNAG 1 cut(s) 468
DpnI GATC 3 cut(s) 93, 279, 414
DpnII GATC 3 cut(s) 91, 277, 412
DraIII CACNNNGTG 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 83
Eco32I GATATC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 369
EcoRV GATATC 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 3 cut(s) 92, 304, 364
FaiI YATR 9 cut(s) 90, 168, 237, 243, 302, 362, 403, 423, 585
FatI CATG 3 cut(s) 88, 300, 360
Fnu4HI GCNGC 2 cut(s) 75, 552
FokI GGATG 3 cut(s) 66, 236, 299
Fsp4HI GCNGC 2 cut(s) 75, 552
GluI GCNGC 2 cut(s) 75, 552
HapII CCGG 1 cut(s) 320
Hin1II CATG 3 cut(s) 92, 304, 364
HinfI GANTC 3 cut(s) 43, 472, 608
HpaII CCGG 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 2 cut(s) 27, 350
Hpy188III TCNNGA 2 cut(s) 95, 605
Hpy8I GTNNAC 1 cut(s) 526
Hpy99I CGWCG 1 cut(s) 480
HpyCH4V TGCA 4 cut(s) 77, 304, 521, 577
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 557
HpyF3I CTNAG 1 cut(s) 468
Hsp92II CATG 3 cut(s) 92, 304, 364
Kzo9I GATC 3 cut(s) 91, 277, 412
LmnI GCTCC 2 cut(s) 118, 445
LpnPI CCDG 9 cut(s) 131, 171, 269, 290, 324, 333, 356, 383, 429
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 564
MalI GATC 3 cut(s) 93, 279, 414
MboI GATC 3 cut(s) 91, 277, 412
MboII GAAGA 4 cut(s) 20, 281, 500, 511
MluCI AATT 3 cut(s) 29, 99, 192
MlyI GAGTC 1 cut(s) 602
MnlI CCTC 7 cut(s) 33, 243, 264, 462, 465, 473, 550
MseI TTAA 4 cut(s) 32, 195, 353, 616
MslI CAYNNNNRTG 2 cut(s) 240, 432
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 3 cut(s) 320, 321, 371
MvaI CCWGG 1 cut(s) 371
MwoI GCNNNNNNNGC 2 cut(s) 404, 557
NciI CCSGG 2 cut(s) 320, 321
NdeII GATC 3 cut(s) 91, 277, 412
NlaIII CATG 3 cut(s) 92, 304, 364
NlaIV GGNNCC 1 cut(s) 309
PfeI GAWTC 2 cut(s) 43, 472
PkrI GCNGC 2 cut(s) 76, 553
PleI GAGTC 1 cut(s) 602
PpsI GAGTC 1 cut(s) 602
PshBI ATTAAT 1 cut(s) 353
Psp6I CCWGG 1 cut(s) 369
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 1 cut(s) 104
PstNI CAGNNNCTG 1 cut(s) 74
RsaI GTAC 2 cut(s) 215, 569
RsaNI GTAC 2 cut(s) 214, 568
RseI CAYNNNNRTG 2 cut(s) 240, 432
SaqAI TTAA 4 cut(s) 32, 195, 353, 616
SatI GCNGC 2 cut(s) 75, 552
Sau3AI GATC 3 cut(s) 91, 277, 412
Sau96I GGNCC 1 cut(s) 104
ScaI AGTACT 1 cut(s) 569
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 3 cut(s) 320, 321, 371
SetI ASST 6 cut(s) 76, 115, 201, 263, 313, 450
SfaNI GCATC 1 cut(s) 564
SinI GGWCC 1 cut(s) 104
SmaI CCCGGG 1 cut(s) 321
SmiMI CAYNNNNRTG 2 cut(s) 240, 432
Sse9I AATT 3 cut(s) 29, 99, 192
SsiI CCGC 1 cut(s) 552
StyD4I CCNGG 3 cut(s) 318, 319, 369
StyI CCWWGG 1 cut(s) 83
TaqI TCGA 1 cut(s) 572
TasI AATT 3 cut(s) 29, 99, 192
TatI WGTACW 2 cut(s) 213, 567
TauI GCSGC 1 cut(s) 554
TfiI GAWTC 2 cut(s) 43, 472
Tru1I TTAA 4 cut(s) 32, 195, 353, 616
Tru9I TTAA 4 cut(s) 32, 195, 353, 616
TscAI CASTG 3 cut(s) 288, 472, 528
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 4 cut(s) 39, 183, 238, 519
TspMI CCCGGG 1 cut(s) 319
TspRI CASTG 3 cut(s) 288, 472, 528
VpaK11BI GGWCC 1 cut(s) 104
VspI ATTAAT 1 cut(s) 353
XmaI CCCGGG 1 cut(s) 319
ZrmI AGTACT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.