Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004908

Physical Location & Seq

Genomic Coordinates Forward (+)

23759069 .. 23761663

Gene Structure 2595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G200800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCTGAAGGAAGCGAAGAACCTAAACCGCAAAGAGCTCCCAAGTTAAATGAGAGGATTCTTTCATCTTTGTCAAGGAGATCAGTTGCTGCACATCCTTGGCATGATCTTGAAATTGGACCTACTGCACCCCACCTTTTCAACGTTGTTGTTGAGATAACCAAGGGAAGCAAAGTCAAATATGAACTTGACAAGAAGACAGGACTCATTAAGGTTGATCGGATTTTGTATTCATCGGTCGTGTATCCTCACAATTATGGTTTCATCCCTCGCACCTTGTGTGAAGACAATGATCCACTGGATGTTTTAGTTATCATGCAGGAACCTGTCCTTCCTGGTTGTTTTCTGCGAGCCAGAGCCATTGGAGTAATGCCCATGATTGACCAGGGAGAGAAAGATGATAAGATCATCGCAGTCTGTGCAGATGATCCAGAGTATACGCATTACACTGAACTCAATGACCTTCCCCCTCATCGCCTTTCTGAGATCCGTCGCTTCTTTGAAGACTACAAGAAGAATGAGAACAAAGAGGTTGCAGTAAACGCCTTTTTGCCTGCAGCCGCTGCTCTTGAAGCTATCCAGTACTCAATGGACCTTTACGCTGAGTACATAATGCACACCTTAAGGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019915 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051235 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

211

Amino Acids

23.98

Weight (kDa)

5.67

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01050 AT1G01050 AT2G46860 AT4G01480 AT4G01480
fragaria_vesca	FvH4_7g17871 FvH4_7g17880 FvH4_7g17880 FvH4_7g17880
malus_domestica	MD01G1091200.v1.1 MD01G1091400.v1.1 MD07G1161500.v1.1
prunus_persica	Prupe.2G200700_v2.0.a1 Prupe.2G200700_v2.0.a1 Prupe.2G200800_v2.0.a1 Prupe.2G200800_v2.0.a1
pyrus_communis	pycom01g11550
rosa_chinensis	RchiOBHm_Chr1g0361351
rosa_laevigata	RLG00000027723 RLG00000027724
rosa_multiflora	Rmu_sc0002119.1_g000027
rosa_roxburghii	Rroxscaffold_4G00295030
rosa_rugosa	Rorug01G0288300 Rorug01G0288400 Rorug01G0288500 Rorug01G0288800
rosa_samantha	Rh1AG299600 Rh1BG263400
rosa_wichuraiana	Rw1G026520 Rw1G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	437
AciI	CCGC	3 cut(s)	29, 561, 628
AclI	AACGTT	1 cut(s)	144
AclWI	GGATC	3 cut(s)	287, 422, 481
AcuI	CTGAAG	1 cut(s)	27
AdeI	CACNNNGTG	1 cut(s)	279
AfaI	GTAC	2 cut(s)	584, 608
AfiI	CCNNNNNNNGG	1 cut(s)	627
AflII	CTTAAG	1 cut(s)	622
AgsI	TTSAA	4 cut(s)	113, 142, 503, 572
AjnI	CCWGG	2 cut(s)	334, 384
AluBI	AGCT	2 cut(s)	38, 575
AluI	AGCT	2 cut(s)	38, 575
Alw21I	GWGCWC	1 cut(s)	40
AlwI	GGATC	3 cut(s)	287, 422, 481
AlwNI	CAGNNNCTG	2 cut(s)	89, 563
ApeKI	GCWGC	3 cut(s)	89, 557, 563
AspS9I	GGNCC	2 cut(s)	119, 592
AvaII	GGWCC	2 cut(s)	119, 592
BanII	GRGCYC	1 cut(s)	40
BbsI	GAAGAC	3 cut(s)	203, 291, 510
Bbv12I	GWGCWC	1 cut(s)	40
BbvI	GCAGC	3 cut(s)	76, 550, 569
BciT130I	CCWGG	2 cut(s)	336, 386
BciVI	GTATCC	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	555
BfrI	CTTAAG	1 cut(s)	622
BfuI	GTATCC	1 cut(s)	255
BisI	GCNGC	4 cut(s)	90, 558, 561, 564
BlsI	GCNGC	4 cut(s)	91, 559, 562, 565
BmcAI	AGTACT	1 cut(s)	584
Bme1390I	CCNGG	2 cut(s)	336, 386
Bme18I	GGWCC	2 cut(s)	119, 592
BmgT120I	GGNCC	2 cut(s)	119, 592
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	2 cut(s)	336, 386
BpiI	GAAGAC	3 cut(s)	203, 291, 510
BsaJI	CCNNGG	3 cut(s)	98, 162, 385
Bsc4I	CCNNNNNNNGG	1 cut(s)	627
Bse1I	ACTGG	2 cut(s)	303, 580
BseBI	CCWGG	2 cut(s)	336, 386
BseDI	CCNNGG	3 cut(s)	98, 162, 385
BseGI	GGATG	3 cut(s)	94, 264, 307
BseLI	CCNNNNNNNGG	1 cut(s)	627
BseMII	CTCAG	2 cut(s)	474, 594
BseNI	ACTGG	2 cut(s)	303, 580
BseXI	GCAGC	3 cut(s)	76, 550, 569
BsgI	GTGCAG	3 cut(s)	75, 111, 441
Bsh1285I	CGRYCG	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	627
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	7 cut(s)	80, 106, 217, 292, 405, 427, 486
BspACI	CCGC	3 cut(s)	29, 561, 628
BspCNI	CTCAG	2 cut(s)	475, 595
BspLI	GGNNCC	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	559
BspPI	GGATC	3 cut(s)	287, 422, 481
BspTI	CTTAAG	1 cut(s)	622
BsrI	ACTGG	2 cut(s)	303, 580
BssECI	CCNNGG	3 cut(s)	98, 162, 385
BssMI	GATC	7 cut(s)	80, 106, 217, 292, 405, 427, 486
BssNAI	GTATAC	1 cut(s)	438
BssT1I	CCWWGG	2 cut(s)	98, 162
Bst1107I	GTATAC	1 cut(s)	438
Bst2UI	CCWGG	2 cut(s)	336, 386
BstAFI	CTTAAG	1 cut(s)	622
BstAPI	GCANNNNNTGC	2 cut(s)	419, 563
BstC8I	GCNNGC	2 cut(s)	351, 555
BstDEI	CTNAG	2 cut(s)	483, 603
BstF5I	GGATG	3 cut(s)	94, 264, 307
BstKTI	GATC	7 cut(s)	83, 109, 220, 295, 408, 430, 489
BstMBI	GATC	7 cut(s)	80, 106, 217, 292, 405, 427, 486
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	4 cut(s)	419, 542, 563, 572
BstNI	CCWGG	2 cut(s)	336, 386
BstSCI	CCNGG	2 cut(s)	334, 384
BstSFI	CTRYAG	1 cut(s)	555
BstV1I	GCAGC	3 cut(s)	76, 550, 569
BstV2I	GAAGAC	3 cut(s)	203, 291, 510
BstX2I	RGATCY	1 cut(s)	486
BstYI	RGATCY	1 cut(s)	486
BstZ17I	GTATAC	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	255
BtgZI	GCGATG	2 cut(s)	394, 458
BtsCI	GGATG	3 cut(s)	94, 264, 307
BtsIMutI	CAGTG	2 cut(s)	296, 447
Cac8I	GCNNGC	2 cut(s)	351, 555
CaiI	CAGNNNCTG	2 cut(s)	89, 563
Cfr13I	GGNCC	2 cut(s)	119, 592
Csp6I	GTAC	2 cut(s)	583, 607
CviAII	CATG	3 cut(s)	104, 316, 376
CviJI	RGCY	5 cut(s)	38, 353, 359, 560, 575
CviKI_1	RGCY	5 cut(s)	38, 353, 359, 560, 575
CviQI	GTAC	2 cut(s)	583, 607
DdeI	CTNAG	2 cut(s)	483, 603
DpnI	GATC	7 cut(s)	82, 108, 219, 294, 407, 429, 488
DpnII	GATC	7 cut(s)	80, 106, 217, 292, 405, 427, 486
DraIII	CACNNNGTG	1 cut(s)	279
Ecl136II	GAGCTC	1 cut(s)	38
Eco130I	CCWWGG	2 cut(s)	98, 162
Eco24I	GRGCYC	1 cut(s)	40
Eco47I	GGWCC	2 cut(s)	119, 592
Eco53kI	GAGCTC	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	38
EcoRII	CCWGG	2 cut(s)	334, 384
EcoT14I	CCWWGG	2 cut(s)	98, 162
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	2 cut(s)	98, 162
FaeI	CATG	3 cut(s)	107, 319, 379
FaiI	YATR	7 cut(s)	105, 183, 258, 317, 377, 438, 611
FatI	CATG	3 cut(s)	103, 315, 375
FblI	GTMKAC	1 cut(s)	437
Fnu4HI	GCNGC	4 cut(s)	90, 558, 561, 564
FokI	GGATG	3 cut(s)	81, 251, 314
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	4 cut(s)	90, 558, 561, 564
GluI	GCNGC	4 cut(s)	90, 558, 561, 564
Hin1II	CATG	3 cut(s)	107, 319, 379
HinfI	GANTC	2 cut(s)	58, 204
Hpy166II	GTNNAC	2 cut(s)	438, 541
Hpy188I	TCNGA	3 cut(s)	7, 222, 484
Hpy188III	TCNNGA	3 cut(s)	110, 431, 569
Hpy8I	GTNNAC	2 cut(s)	438, 541
Hpy99I	CGWCG	1 cut(s)	495
HpyAV	CCTTC	2 cut(s)	341, 473
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	7 cut(s)	92, 128, 319, 422, 536, 557, 616
HpyF10VI	GCNNNNNNNGC	4 cut(s)	419, 542, 563, 572
HpyF3I	CTNAG	2 cut(s)	483, 603
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	3 cut(s)	107, 319, 379
Kzo9I	GATC	7 cut(s)	80, 106, 217, 292, 405, 427, 486
LmnI	GCTCC	1 cut(s)	43
Lsp1109I	GCAGC	3 cut(s)	76, 550, 569
MaeII	ACGT	1 cut(s)	144
MalI	GATC	7 cut(s)	82, 108, 219, 294, 407, 429, 488
MboI	GATC	7 cut(s)	80, 106, 217, 292, 405, 427, 486
MboII	GAAGA	5 cut(s)	29, 208, 296, 515, 526
MflI	RGATCY	1 cut(s)	486
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	2 cut(s)	114, 253
MlyI	GAGTC	1 cut(s)	198
MnlI	CCTC	5 cut(s)	48, 258, 279, 480, 523
MseI	TTAA	3 cut(s)	47, 210, 623
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	563
MspCI	CTTAAG	1 cut(s)	622
MspR9I	CCNGG	2 cut(s)	336, 386
MvaI	CCWGG	2 cut(s)	336, 386
MwoI	GCNNNNNNNGC	4 cut(s)	419, 542, 563, 572
NdeII	GATC	7 cut(s)	80, 106, 217, 292, 405, 427, 486
NlaIII	CATG	3 cut(s)	107, 319, 379
NlaIV	GGNNCC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	4 cut(s)	91, 559, 562, 565
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	40
Psp1406I	AACGTT	1 cut(s)	144
Psp6I	CCWGG	2 cut(s)	334, 384
PspGI	CCWGG	2 cut(s)	334, 384
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	2 cut(s)	119, 592
PstI	CTGCAG	1 cut(s)	559
PstNI	CAGNNNCTG	2 cut(s)	89, 563
PsuI	RGATCY	1 cut(s)	486
RsaI	GTAC	2 cut(s)	584, 608
RsaNI	GTAC	2 cut(s)	583, 607
RseI	CAYNNNNRTG	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	40
SaqAI	TTAA	3 cut(s)	47, 210, 623
SatI	GCNGC	4 cut(s)	90, 558, 561, 564
Sau3AI	GATC	7 cut(s)	80, 106, 217, 292, 405, 427, 486
Sau96I	GGNCC	2 cut(s)	119, 592
ScaI	AGTACT	1 cut(s)	584
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	2 cut(s)	336, 386
SduI	GDGCHC	1 cut(s)	40
SfcI	CTRYAG	1 cut(s)	555
SinI	GGWCC	2 cut(s)	119, 592
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	622
SmoI	CTYRAG	1 cut(s)	622
Sse9I	AATT	2 cut(s)	114, 253
SsiI	CCGC	3 cut(s)	29, 561, 628
SstI	GAGCTC	1 cut(s)	40
StyD4I	CCNGG	2 cut(s)	334, 384
StyI	CCWWGG	2 cut(s)	98, 162
TaiI	ACGT	1 cut(s)	147
TaqII	GACCGA	1 cut(s)	226
TasI	AATT	2 cut(s)	114, 253
TatI	WGTACW	2 cut(s)	582, 606
TauI	GCSGC	1 cut(s)	563
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	3 cut(s)	47, 210, 623
Tru9I	TTAA	3 cut(s)	47, 210, 623
TscAI	CASTG	2 cut(s)	303, 454
TseI	GCWGC	3 cut(s)	89, 557, 563
TspDTI	ATGAA	4 cut(s)	54, 198, 222, 253
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	2 cut(s)	303, 454
Vha464I	CTTAAG	1 cut(s)	622
VpaK11BI	GGWCC	2 cut(s)	119, 592
XmiI	GTMKAC	1 cut(s)	437
ZrmI	AGTACT	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.