Rw1G026520

Soluble inorganic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004908
Physical Location & Seq
Forward (+)
53651968 .. 53653423
1456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G026520.1

Sequence Viewer

Length: 618 bp
ATGACTGAAGAAAAAAAACCAACTCCGAAATTAAATGAGAGGATTCTTTCATCTTTGTCAAGGAAATCAGTTGCTGCACATCCTTGGCATGATCTTGAAATTGGACCATCAGCTCCCCAAATTTTCAATGTTGTTGTTGAGATATCACAGGGAAGCAAAGTCAAATATGAACTTGACAAGAAAACAGGATTAATTAAGGTTGATCGGATTTTGTACTCCTCAGTGGTCTATCCTCATAACTATGGTTTCATCCCTCGCACCTTGTGTGAAGACAATGATCCACTGGATGTCTTAGTTCTCATGCAGGAACCTGTTATTCCGGGTGCATTTCTGCGTGCCAAAGCCATTGGACTAATGCCCATGATTGACCAGGGAGAGAAAGATGATAAGATCATTGCAGTATGTGCTGATGATCCAGCCTATAATCATTACAGTGACATCGGAGAGCTTCCTCCTCATCGCCTCACTGAGATTCGTCGCTTCTTTGAAGACTACAAGAAGAATGAACACAAAGAGGTTGCAGTGGACGAGTTTTTGCCTTGCTCAACTGCCGCGGAAGCTATTCAGTACTCGATGGATCTTTATGCCGAGTACATAATGCTCACCTTAAGGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Pyrophosphatase

Protein Analysis

205

Amino Acids

23.38

Weight (kDa)

5.41

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyrophosphatase PF00719 44 - 195 3.1e-57 Inorganic pyrophosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 554
AciI CCGC 3 cut(s) 552, 554, 613
AclWI GGATC 3 cut(s) 272, 407, 585
AcsI RAATTY 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 27
AdeI CACNNNGTG 1 cut(s) 264
AfaI GTAC 3 cut(s) 215, 569, 593
AfiI CCNNNNNNNGG 1 cut(s) 612
AflII CTTAAG 1 cut(s) 607
AgsI TTSAA 3 cut(s) 98, 127, 488
AjnI CCWGG 1 cut(s) 369
AluBI AGCT 3 cut(s) 113, 448, 560
AluI AGCT 3 cut(s) 113, 448, 560
AlwI GGATC 3 cut(s) 272, 407, 585
AlwNI CAGNNNCTG 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 120
AseI ATTAAT 1 cut(s) 191
Asp700I GAANNNNTTC 1 cut(s) 561
AspS9I GGNCC 1 cut(s) 104
AsuC2I CCSGG 1 cut(s) 321
AsuHPI GGTGA 1 cut(s) 595
AvaII GGWCC 1 cut(s) 104
BbsI GAAGAC 2 cut(s) 276, 495
BbvI GCAGC 1 cut(s) 61
BccI CCATC 2 cut(s) 115, 568
BciT130I CCWGG 1 cut(s) 371
BcnI CCSGG 1 cut(s) 321
BfrI CTTAAG 1 cut(s) 607
BisI GCNGC 2 cut(s) 75, 552
BlsI GCNGC 2 cut(s) 76, 553
BmcAI AGTACT 1 cut(s) 569
Bme1390I CCNGG 2 cut(s) 321, 371
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 2 cut(s) 321, 371
BpiI GAAGAC 2 cut(s) 276, 495
BpuMI CCSGG 1 cut(s) 321
BsaJI CCNNGG 3 cut(s) 83, 370, 552
Bsc4I CCNNNNNNNGG 1 cut(s) 612
Bse1I ACTGG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 393
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 3 cut(s) 83, 370, 552
BseGI GGATG 3 cut(s) 79, 249, 292
BseLI CCNNNNNNNGG 1 cut(s) 612
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 2 cut(s) 234, 459
BseNI ACTGG 1 cut(s) 288
BseRI GAGGAG 2 cut(s) 208, 444
BseXI GCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 554
BsiSI CCGG 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 612
Bsp143I GATC 6 cut(s) 91, 202, 277, 390, 412, 577
BspACI CCGC 3 cut(s) 552, 554, 613
BspCNI CTCAG 2 cut(s) 233, 460
BspFNI CGCG 1 cut(s) 554
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 3 cut(s) 272, 407, 585
BspTI CTTAAG 1 cut(s) 607
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 1 cut(s) 288
BssECI CCNNGG 3 cut(s) 83, 370, 552
BssMI GATC 6 cut(s) 91, 202, 277, 390, 412, 577
BssT1I CCWWGG 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 1 cut(s) 434
BstAFI CTTAAG 1 cut(s) 607
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 3 cut(s) 220, 292, 468
BstDSI CCRYGG 1 cut(s) 552
BstF5I GGATG 3 cut(s) 79, 249, 292
BstFNI CGCG 1 cut(s) 554
BstKTI GATC 6 cut(s) 94, 205, 280, 393, 415, 580
BstMBI GATC 6 cut(s) 91, 202, 277, 390, 412, 577
BstMWI GCNNNNNNNGC 2 cut(s) 404, 557
BstNI CCWGG 1 cut(s) 371
BstSCI CCNGG 2 cut(s) 319, 369
BstUI CGCG 1 cut(s) 554
BstV1I GCAGC 1 cut(s) 61
BstV2I GAAGAC 2 cut(s) 276, 495
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
BtgI CCRYGG 1 cut(s) 552
BtgZI GCGATG 1 cut(s) 443
BtsCI GGATG 3 cut(s) 79, 249, 292
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 5 cut(s) 228, 281, 439, 465, 528
Cac8I GCNNGC 1 cut(s) 336
CaiI CAGNNNCTG 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 104
Cfr42I CCGCGG 1 cut(s) 555
Csp6I GTAC 3 cut(s) 214, 568, 592
CviAII CATG 3 cut(s) 89, 301, 361
CviJI RGCY 5 cut(s) 113, 344, 419, 448, 560
CviKI_1 RGCY 5 cut(s) 113, 344, 419, 448, 560
CviQI GTAC 3 cut(s) 214, 568, 592
DdeI CTNAG 3 cut(s) 220, 292, 468
DpnI GATC 6 cut(s) 93, 204, 279, 392, 414, 579
DpnII GATC 6 cut(s) 91, 202, 277, 390, 412, 577
DraIII CACNNNGTG 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 83
Eco32I GATATC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 369
EcoRV GATATC 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 3 cut(s) 92, 304, 364
FatI CATG 3 cut(s) 88, 300, 360
Fnu4HI GCNGC 2 cut(s) 75, 552
FokI GGATG 3 cut(s) 66, 236, 299
Fsp4HI GCNGC 2 cut(s) 75, 552
GluI GCNGC 2 cut(s) 75, 552
HapII CCGG 1 cut(s) 320
Hin1II CATG 3 cut(s) 92, 304, 364
HinfI GANTC 2 cut(s) 43, 472
HpaII CCGG 1 cut(s) 320
HphI GGTGA 1 cut(s) 595
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 3 cut(s) 27, 207, 443
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 526
Hpy99I CGWCG 1 cut(s) 480
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4V TGCA 5 cut(s) 77, 304, 326, 398, 521
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 557
HpyF3I CTNAG 3 cut(s) 220, 292, 468
Hsp92II CATG 3 cut(s) 92, 304, 364
KspI CCGCGG 1 cut(s) 555
Kzo9I GATC 6 cut(s) 91, 202, 277, 390, 412, 577
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 9 cut(s) 134, 171, 269, 290, 324, 333, 356, 383, 429
Lsp1109I GCAGC 1 cut(s) 61
MaeIII GTNAC 1 cut(s) 434
MalI GATC 6 cut(s) 93, 204, 279, 392, 414, 579
MboI GATC 6 cut(s) 91, 202, 277, 390, 412, 577
MboII GAAGA 4 cut(s) 20, 281, 500, 511
MflI RGATCY 1 cut(s) 577
MluCI AATT 4 cut(s) 29, 99, 120, 192
MnlI CCTC 8 cut(s) 33, 229, 243, 264, 462, 465, 473, 508
MroXI GAANNNNTTC 1 cut(s) 561
MseI TTAA 4 cut(s) 32, 191, 195, 608
MslI CAYNNNNRTG 2 cut(s) 240, 432
MspA1I CMGCKG 1 cut(s) 554
MspCI CTTAAG 1 cut(s) 607
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 2 cut(s) 321, 371
MvaI CCWGG 1 cut(s) 371
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 2 cut(s) 404, 557
NciI CCSGG 1 cut(s) 321
NdeII GATC 6 cut(s) 91, 202, 277, 390, 412, 577
NlaIII CATG 3 cut(s) 92, 304, 364
NlaIV GGNNCC 1 cut(s) 309
NmeAIII GCCGAG 1 cut(s) 613
NmuCI GTSAC 1 cut(s) 434
PacI TTAATTAA 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 561
PfeI GAWTC 2 cut(s) 43, 472
PkrI GCNGC 2 cut(s) 76, 553
PshBI ATTAAT 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 369
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 1 cut(s) 104
PstNI CAGNNNCTG 1 cut(s) 74
PsuI RGATCY 1 cut(s) 577
RsaI GTAC 3 cut(s) 215, 569, 593
RsaNI GTAC 3 cut(s) 214, 568, 592
RseI CAYNNNNRTG 2 cut(s) 240, 432
SacII CCGCGG 1 cut(s) 555
SaqAI TTAA 4 cut(s) 32, 191, 195, 608
SatI GCNGC 2 cut(s) 75, 552
Sau3AI GATC 6 cut(s) 91, 202, 277, 390, 412, 577
Sau96I GGNCC 1 cut(s) 104
ScaI AGTACT 1 cut(s) 569
ScrFI CCNGG 2 cut(s) 321, 371
SetI ASST 8 cut(s) 115, 201, 263, 313, 450, 519, 562, 608
Sfr303I CCGCGG 1 cut(s) 555
SgrBI CCGCGG 1 cut(s) 555
SinI GGWCC 1 cut(s) 104
SmiMI CAYNNNNRTG 2 cut(s) 240, 432
SmlI CTYRAG 1 cut(s) 607
SmoI CTYRAG 1 cut(s) 607
Sse9I AATT 4 cut(s) 29, 99, 120, 192
SsiI CCGC 3 cut(s) 552, 554, 613
StyD4I CCNGG 2 cut(s) 319, 369
StyI CCWWGG 1 cut(s) 83
TaaI ACNGT 1 cut(s) 434
TaqI TCGA 1 cut(s) 572
TasI AATT 4 cut(s) 29, 99, 120, 192
TatI WGTACW 3 cut(s) 213, 567, 591
TauI GCSGC 1 cut(s) 554
TfiI GAWTC 2 cut(s) 43, 472
Tru1I TTAA 4 cut(s) 32, 191, 195, 608
Tru9I TTAA 4 cut(s) 32, 191, 195, 608
TscAI CASTG 5 cut(s) 228, 288, 439, 472, 528
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 4 cut(s) 39, 183, 238, 519
TspRI CASTG 5 cut(s) 228, 288, 439, 472, 528
Vha464I CTTAAG 1 cut(s) 607
VpaK11BI GGWCC 1 cut(s) 104
VspI ATTAAT 1 cut(s) 191
XapI RAATTY 1 cut(s) 120
XmnI GAANNNNTTC 1 cut(s) 561
ZrmI AGTACT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.