Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004908

Physical Location & Seq

Genomic Coordinates Reverse (-)

14351208 .. 14355399

Gene Structure 4192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027723

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGTGGGCAGGTATGGGTTTGTGGAGGGTAGGAGGAAAAGTGGATTTGAGGGAGGCGATGATTTTGGTAGCCGGAGATTGAAGAAGAAGAAGATTGGGTCGATTTCTAAGTCTGGGGATACATGCCTCCAAGTTCTCAGCAGCCCCAAACAACACCAAGAGATGACTTCTGAGGAGAATGATGAAAAACCACATAAACCAACTCCCAAGTTAAATGAGAGGATTCTTTCATCTTTGTCAAGGAGATCAGTTGCTGCACATCCTTGGCACGATCTTGAAATTGGTCCTACAGCTCCACATATTTTCAATGTGGTTGTTGAGATTACAAAGGGAAGCAAAGTCAAATACGAACTTGACAAGAAGACAGGATTAATTAAGGTTGATCGGATTTTGTACTCGTCTGTGGTCTATCCTCATAACTATGGCTTCATCCCTCGCACCTTGTGTGAAGATAATGATCCACTTGATGTTCTAGTCCTCATGCAGGAACCTGTCCTTCCTGGTTGCTTTCTGCGAGCAAGAGCCATTGGAGTGATGCCTATGATTGACCAGGGAGAGAAAGATGATAAGATCATTGCAGTCTGTGCTGACGATCCAGAGTATACGCATTATACCGAACTCAATGACCTACCCCCTCACCGCCTTTCTGAAATCCGTCGCTTCTTTGAAGACTACAAGAAAAATGAGAACAAAGAGGTTGCGGTTAACGCCTTTTTGCCTGCCACATCCGCTCTTGAAGCTATCCAGTACTCCATGGATCTTTATGCTGAGTACATACTGCACACCTTAAGGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019915 GO:0033036 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051235 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

266

Amino Acids

30.16

Weight (kDa)

6.76

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyrophosphatase	PF00719	104 - 255	2.6e-59	Inorganic pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01050 AT1G01050 AT2G46860 AT4G01480 AT4G01480
fragaria_vesca	FvH4_7g17871 FvH4_7g17880 FvH4_7g17880 FvH4_7g17880
malus_domestica	MD01G1091200.v1.1 MD01G1091400.v1.1 MD07G1161500.v1.1
prunus_persica	Prupe.2G200700_v2.0.a1 Prupe.2G200700_v2.0.a1 Prupe.2G200800_v2.0.a1 Prupe.2G200800_v2.0.a1
pyrus_communis	pycom01g11550
rosa_chinensis	RchiOBHm_Chr1g0361351
rosa_laevigata	RLG00000027723 RLG00000027724
rosa_multiflora	Rmu_sc0002119.1_g000027
rosa_roxburghii	Rroxscaffold_4G00295030
rosa_rugosa	Rorug01G0288300 Rorug01G0288400 Rorug01G0288500 Rorug01G0288800
rosa_samantha	Rh1AG299600 Rh1BG263400
rosa_wichuraiana	Rw1G026520 Rw1G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	731
AccI	GTMKAC	1 cut(s)	602
AciI	CCGC	4 cut(s)	640, 701, 729, 793
AclWI	GGATC	3 cut(s)	452, 587, 765
AdeI	CACNNNGTG	1 cut(s)	444
AfaI	GTAC	3 cut(s)	395, 749, 773
AfiI	CCNNNNNNNGG	2 cut(s)	484, 792
AflII	CTTAAG	1 cut(s)	787
AgsI	TTSAA	5 cut(s)	82, 278, 307, 668, 737
AjnI	CCWGG	2 cut(s)	499, 549
AluBI	AGCT	2 cut(s)	293, 740
AluI	AGCT	2 cut(s)	293, 740
AlwI	GGATC	3 cut(s)	452, 587, 765
AlwNI	CAGNNNCTG	1 cut(s)	254
ApeKI	GCWGC	2 cut(s)	141, 254
AseI	ATTAAT	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	629
AvaII	GGWCC	1 cut(s)	284
BbsI	GAAGAC	2 cut(s)	368, 675
BbvI	GCAGC	2 cut(s)	153, 241
BciT130I	CCWGG	2 cut(s)	501, 551
BciVI	GTATCC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	1 cut(s)	288
BfrI	CTTAAG	1 cut(s)	787
BfuI	GTATCC	1 cut(s)	112
BisI	GCNGC	2 cut(s)	142, 255
BlsI	GCNGC	2 cut(s)	143, 256
BmcAI	AGTACT	1 cut(s)	749
Bme1390I	CCNGG	2 cut(s)	501, 551
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	1 cut(s)	489
BmrFI	CCNGG	2 cut(s)	501, 551
BmsI	GCATC	1 cut(s)	525
BpiI	GAAGAC	2 cut(s)	368, 675
BsaBI	GATNNNNATC	1 cut(s)	456
BsaJI	CCNNGG	3 cut(s)	263, 550, 753
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	2 cut(s)	484, 792
Bse1I	ACTGG	1 cut(s)	745
Bse3DI	GCAATG	1 cut(s)	573
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	2 cut(s)	501, 551
BseDI	CCNNGG	3 cut(s)	263, 550, 753
BseGI	GGATG	3 cut(s)	259, 429, 725
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	2 cut(s)	484, 792
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	3 cut(s)	151, 162, 759
BseNI	ACTGG	1 cut(s)	745
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	153, 241
BsgI	GTGCAG	2 cut(s)	240, 764
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	2 cut(s)	484, 792
Bsp143I	GATC	7 cut(s)	245, 271, 382, 457, 570, 592, 757
Bsp19I	CCATGG	1 cut(s)	753
BspACI	CCGC	4 cut(s)	640, 701, 729, 793
BspCNI	CTCAG	3 cut(s)	150, 163, 760
BspLI	GGNNCC	1 cut(s)	489
BspPI	GGATC	3 cut(s)	452, 587, 765
BspTI	CTTAAG	1 cut(s)	787
BsrBI	CCGCTC	1 cut(s)	731
BsrDI	GCAATG	1 cut(s)	573
BsrI	ACTGG	1 cut(s)	745
BssECI	CCNNGG	3 cut(s)	263, 550, 753
BssMI	GATC	7 cut(s)	245, 271, 382, 457, 570, 592, 757
BssNAI	GTATAC	1 cut(s)	603
BssT1I	CCWWGG	2 cut(s)	263, 753
Bst1107I	GTATAC	1 cut(s)	603
Bst2UI	CCWGG	2 cut(s)	501, 551
BstAFI	CTTAAG	1 cut(s)	787
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstC8I	GCNNGC	2 cut(s)	516, 720
BstDEI	CTNAG	4 cut(s)	108, 137, 171, 768
BstDSI	CCRYGG	1 cut(s)	753
BstENI	CCTNNNNNAGG	1 cut(s)	482
BstF5I	GGATG	3 cut(s)	259, 429, 725
BstKTI	GATC	7 cut(s)	248, 274, 385, 460, 573, 595, 760
BstMBI	GATC	7 cut(s)	245, 271, 382, 457, 570, 592, 757
BstMWI	GCNNNNNNNGC	4 cut(s)	584, 707, 728, 737
BstNI	CCWGG	2 cut(s)	501, 551
BstNSI	RCATGY	1 cut(s)	126
BstSCI	CCNGG	2 cut(s)	499, 549
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	153, 241
BstV2I	GAAGAC	2 cut(s)	368, 675
BstX2I	RGATCY	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	757
BstZ17I	GTATAC	1 cut(s)	603
BsuI	GTATCC	1 cut(s)	112
BtgI	CCRYGG	1 cut(s)	753
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	3 cut(s)	259, 429, 725
Cac8I	GCNNGC	2 cut(s)	516, 720
CaiI	CAGNNNCTG	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	284
Csp6I	GTAC	3 cut(s)	394, 748, 772
CviAII	CATG	3 cut(s)	123, 481, 754
CviJI	RGCY	6 cut(s)	72, 144, 293, 426, 524, 740
CviKI_1	RGCY	6 cut(s)	72, 144, 293, 426, 524, 740
CviQI	GTAC	3 cut(s)	394, 748, 772
DdeI	CTNAG	4 cut(s)	108, 137, 171, 768
DpnI	GATC	7 cut(s)	247, 273, 384, 459, 572, 594, 759
DpnII	GATC	7 cut(s)	245, 271, 382, 457, 570, 592, 757
DraIII	CACNNNGTG	1 cut(s)	444
Eco130I	CCWWGG	2 cut(s)	263, 753
Eco47I	GGWCC	1 cut(s)	284
EcoNI	CCTNNNNNAGG	1 cut(s)	482
EcoRII	CCWGG	2 cut(s)	499, 549
EcoT14I	CCWWGG	2 cut(s)	263, 753
ErhI	CCWWGG	2 cut(s)	263, 753
FaeI	CATG	3 cut(s)	126, 484, 757
FatI	CATG	3 cut(s)	122, 480, 753
FblI	GTMKAC	1 cut(s)	602
Fnu4HI	GCNGC	2 cut(s)	142, 255
FokI	GGATG	3 cut(s)	246, 416, 712
Fsp4HI	GCNGC	2 cut(s)	142, 255
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	2 cut(s)	142, 255
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	3 cut(s)	126, 484, 757
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HinfI	GANTC	1 cut(s)	223
HpaI	GTTAAC	1 cut(s)	706
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	1 cut(s)	629
Hpy166II	GTNNAC	2 cut(s)	603, 706
Hpy188I	TCNGA	3 cut(s)	172, 387, 649
Hpy188III	TCNNGA	3 cut(s)	275, 596, 734
Hpy8I	GTNNAC	2 cut(s)	603, 706
Hpy99I	CGWCG	1 cut(s)	660
HpyAV	CCTTC	1 cut(s)	506
HpyCH4V	TGCA	4 cut(s)	257, 484, 578, 781
HpyF10VI	GCNNNNNNNGC	4 cut(s)	584, 707, 728, 737
HpyF3I	CTNAG	4 cut(s)	108, 137, 171, 768
Hsp92II	CATG	3 cut(s)	126, 484, 757
KspAI	GTTAAC	1 cut(s)	706
Kzo9I	GATC	7 cut(s)	245, 271, 382, 457, 570, 592, 757
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	2 cut(s)	153, 241
LweI	GCATC	1 cut(s)	525
MaeI	CTAG	1 cut(s)	473
MalI	GATC	7 cut(s)	247, 273, 384, 459, 572, 594, 759
MbiI	CCGCTC	1 cut(s)	731
MboI	GATC	7 cut(s)	245, 271, 382, 457, 570, 592, 757
MboII	GAAGA	7 cut(s)	94, 97, 100, 103, 373, 461, 680
MflI	RGATCY	1 cut(s)	757
MluCI	AATT	2 cut(s)	279, 372
MseI	TTAA	5 cut(s)	212, 371, 375, 705, 788
MslI	CAYNNNNRTG	2 cut(s)	420, 530
MspCI	CTTAAG	1 cut(s)	787
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	2 cut(s)	501, 551
MvaI	CCWGG	2 cut(s)	501, 551
MwoI	GCNNNNNNNGC	4 cut(s)	584, 707, 728, 737
NcoI	CCATGG	1 cut(s)	753
NdeII	GATC	7 cut(s)	245, 271, 382, 457, 570, 592, 757
NlaIII	CATG	3 cut(s)	126, 484, 757
NlaIV	GGNNCC	1 cut(s)	489
NspI	RCATGY	1 cut(s)	126
PacI	TTAATTAA	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	143, 256
PshBI	ATTAAT	1 cut(s)	371
Psp6I	CCWGG	2 cut(s)	499, 549
PspGI	CCWGG	2 cut(s)	499, 549
PspN4I	GGNNCC	1 cut(s)	489
PspPI	GGNCC	1 cut(s)	284
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	757
RsaI	GTAC	3 cut(s)	395, 749, 773
RsaNI	GTAC	3 cut(s)	394, 748, 772
RseI	CAYNNNNRTG	2 cut(s)	420, 530
SaqAI	TTAA	5 cut(s)	212, 371, 375, 705, 788
SatI	GCNGC	2 cut(s)	142, 255
Sau3AI	GATC	7 cut(s)	245, 271, 382, 457, 570, 592, 757
Sau96I	GGNCC	1 cut(s)	284
ScaI	AGTACT	1 cut(s)	749
ScrFI	CCNGG	2 cut(s)	501, 551
SetI	ASST	9 cut(s)	14, 295, 381, 443, 493, 630, 699, 742, 788
SfaNI	GCATC	1 cut(s)	525
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	2 cut(s)	420, 530
SmlI	CTYRAG	1 cut(s)	787
SmoI	CTYRAG	1 cut(s)	787
Sse9I	AATT	2 cut(s)	279, 372
SsiI	CCGC	4 cut(s)	640, 701, 729, 793
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	2 cut(s)	499, 549
StyI	CCWWGG	2 cut(s)	263, 753
TaqI	TCGA	1 cut(s)	101
TasI	AATT	2 cut(s)	279, 372
TatI	WGTACW	3 cut(s)	393, 747, 771
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	5 cut(s)	212, 371, 375, 705, 788
Tru9I	TTAA	5 cut(s)	212, 371, 375, 705, 788
TseI	GCWGC	2 cut(s)	141, 254
TspDTI	ATGAA	3 cut(s)	198, 219, 418
TspGWI	ACGGA	1 cut(s)	644
Vha464I	CTTAAG	1 cut(s)	787
VpaK11BI	GGWCC	1 cut(s)	284
VspI	ATTAAT	1 cut(s)	371
XagI	CCTNNNNNAGG	1 cut(s)	482
XceI	RCATGY	1 cut(s)	126
XmiI	GTMKAC	1 cut(s)	602
XspI	CTAG	1 cut(s)	473
ZrmI	AGTACT	1 cut(s)	749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.