AT1G02500

Catalyzes the formation of S-adenosylmethionine from methionine and ATP

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
518091 .. 520495
2405 bp
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UTR
Exon/CDS
Intron
AT1G02500.2

Sequence Viewer

Length: 1182 bp
ATGGAGACTTTTCTATTCACATCTGAGTCTGTAAACGAGGGACACCCAGACAAGCTCTGTGACCAGATCTCTGATGCAGTCCTCGATGCCTGCCTTGAACAAGACCCTGACAGCAAAGTTGCTTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTTGGTGAGATCACTACCAAGGCTACTGTTGACTACGAGAAGATTGTCCGTGACACCTGTCGCGCCATTGGATTTGTCTCTGATGATGTTGGTCTTGATGCTGACAAATGCAAAGTCCTAGTCAACATTGAGCAACAGAGCCCAGACATTGCTCAAGGAGTTCACGGTCACTTCACCAAATGTCCTGAAGAAATTGGAGCCGGTGACCAAGGGCACATGTTTGGTTATGCCACTGATGAAACCCCTGAGTTAATGCCCCTGAGCCATGTTCTTGCCACCAAGCTCGGTGCTCGCCTAACAGAAGTCAGAAAGAATGGTACTTGCGCCTGGCTAAGACCTGACGGCAAAACCCAAGTCACTGTTGAGTACTACAATGACAAGGGTGCCATGGTCCCAATCCGTGTCCACACAGTCCTCATCTCCACCCAACACGATGAAACTGTGACCAACGACGAAATTGCCCGTGACCTTAAGGAGCATGTCATCAAGCCAGTCATCCCAGAGAAGTACCTAGACGAGAAAACCATCTTCCACTTGAACCCTTCAGGCCGATTCGTCATCGGTGGACCCCATGGAGACGCTGGTCTCACCGGGCGTAAGATCATCATCGACACTTACGGTGGATGGGGAGCTCACGGAGGCGGTGCATTCTCAGGTAAAGACCCAACCAAGGTCGACAGAAGCGGAGCCTACATTGTGAGACAAGCAGCTAAGAGCGTTGTGGCTAACGGGATGGCTCGTAGGGCTCTTGTTCAGGTCTCATACGCCATTGGAGTCCCTGAGCCATTGTCTGTCTTTGTGGACACTTATGAGACTGGATTGATTCCAGACAAGGAGATACTAAAGATTGTGAAGGAGAGCTTCGACTTCAGACCAGGAATGATGACAATTAACCTTGACCTAAAGAGAGGAGGAAACGGAAGGTTCTTGAAAACTGCGGCTTACGGACACTTTGGAAGAGACGACCCTGACTTCACCTGGGAAGTCGTCAAGCCACTCAAGTGGGACAAACCTCAAGCTTAA

Protein Analysis

393

Amino Acids

43.16

Weight (kDa)

5.51

Isoelectric Point (pI)

22.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S-AdoMet_synt_N PF00438 4 - 101 3.6e-43 S-adenosylmethionine synthetase, N-terminal domain
S-AdoMet_synt_M PF02772 117 - 238 1.7e-47 S-adenosylmethionine synthetase, central domain
S-AdoMet_synt_C PF02773 240 - 381 1.8e-58 S-adenosylmethionine synthetase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 542
AccI GTMKAC 1 cut(s) 834
AccII CGCG 1 cut(s) 222
AciI CCGC 3 cut(s) 801, 843, 1097
AcuI CTGAAG 3 cut(s) 366, 687, 1012
AfaI GTAC 3 cut(s) 478, 527, 668
AfiI CCNNNNNNNGG 1 cut(s) 829
AflII CTTAAG 1 cut(s) 629
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 3 cut(s) 98, 697, 1090
AjnI CCWGG 3 cut(s) 485, 1033, 1136
AleI CACNNNNGTG 1 cut(s) 1159
AluBI AGCT 6 cut(s) 55, 442, 791, 869, 1020, 1178
AluI AGCT 6 cut(s) 55, 442, 791, 869, 1020, 1178
Alw21I GWGCWC 2 cut(s) 451, 793
Alw26I GTCTC 8 cut(s) 122, 241, 729, 749, 853, 922, 965, 1113
AoxI GGCC 1 cut(s) 706
ApeKI GCWGC 1 cut(s) 866
ArsI GACNNNNNNTTYG 6 cut(s) 258, 264, 290, 296, 498, 530
AspLEI GCGC 2 cut(s) 224, 485
AspS9I GGNCC 2 cut(s) 550, 725
AsuC2I CCSGG 1 cut(s) 751
AsuHPI GGTGA 5 cut(s) 176, 325, 374, 739, 1126
AvaII GGWCC 2 cut(s) 550, 725
BaeGI GKGCMC 1 cut(s) 375
BanI GGYRCC 1 cut(s) 542
BanII GRGCYC 3 cut(s) 302, 793, 907
Bbv12I GWGCWC 2 cut(s) 451, 793
BbvI GCAGC 1 cut(s) 878
BccI CCATC 3 cut(s) 692, 777, 886
BceAI ACGGC 1 cut(s) 517
BcgI CGANNNNNNTGC 2 cut(s) 599, 633
BciT130I CCWGG 3 cut(s) 487, 1035, 1138
BcnI CCSGG 1 cut(s) 751
BcoDI GTCTC 8 cut(s) 122, 241, 729, 749, 853, 922, 965, 1113
BfaI CTAG 2 cut(s) 278, 671
BfrI CTTAAG 1 cut(s) 629
BglII AGATCT 1 cut(s) 66
BisI GCNGC 2 cut(s) 867, 1098
BlsI GCNGC 2 cut(s) 868, 1099
BmcAI AGTACT 1 cut(s) 527
Bme1390I CCNGG 4 cut(s) 487, 751, 1035, 1138
Bme18I GGWCC 2 cut(s) 550, 725
BmgT120I GGNCC 2 cut(s) 550, 725
BmiI GGNNCC 5 cut(s) 358, 544, 552, 727, 847
BmrFI CCNGG 4 cut(s) 487, 751, 1035, 1138
BmsI GCATC 3 cut(s) 64, 76, 247
BoxI GACNNNNGTC 2 cut(s) 216, 741
Bpu10I CCTNAGC 2 cut(s) 419, 939
BpuEI CTTGAG 3 cut(s) 297, 1142, 1158
BpuMI CCSGG 1 cut(s) 751
BsaBI GATNNNNATC 1 cut(s) 764
BsaI GGTCTC 2 cut(s) 749, 922
BsaJI CCNNGG 6 cut(s) 177, 367, 546, 730, 828, 1137
Bsc4I CCNNNNNNNGG 1 cut(s) 829
Bse118I RCCGGY 1 cut(s) 359
Bse1I ACTGG 2 cut(s) 650, 979
Bse3DI GCAATG 1 cut(s) 306
Bse8I GATNNNNATC 1 cut(s) 764
BseBI CCWGG 3 cut(s) 487, 1035, 1138
BseDI CCNNGG 6 cut(s) 177, 367, 546, 730, 828, 1137
BseGI GGATG 3 cut(s) 654, 788, 897
BseJI GATNNNNATC 1 cut(s) 764
BseLI CCNNNNNNNGG 1 cut(s) 829
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 5 cut(s) 15, 396, 410, 825, 930
BseNI ACTGG 2 cut(s) 650, 979
BseRI GAGGAG 1 cut(s) 1083
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 1 cut(s) 878
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 1 cut(s) 708
BshNI GGYRCC 1 cut(s) 542
BsiHKAI GWGCWC 2 cut(s) 451, 793
BsiSI CCGG 2 cut(s) 360, 750
BslFI GGGAC 4 cut(s) 54, 536, 920, 1178
BslI CCNNNNNNNGG 1 cut(s) 829
BsmAI GTCTC 8 cut(s) 122, 241, 729, 749, 853, 922, 965, 1113
BsmBI CGTCTC 2 cut(s) 729, 1113
BsmFI GGGAC 4 cut(s) 54, 536, 920, 1178
BsmI GAATGC 1 cut(s) 806
BsnI GGCC 1 cut(s) 708
Bso31I GGTCTC 2 cut(s) 749, 922
Bsp1286I GDGCHC 5 cut(s) 302, 375, 451, 793, 907
Bsp143I GATC 3 cut(s) 66, 168, 759
Bsp19I CCATGG 2 cut(s) 546, 730
BspACI CCGC 3 cut(s) 801, 843, 1097
BspANI GGCC 1 cut(s) 708
BspCNI CTCAG 5 cut(s) 16, 397, 411, 824, 931
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 5 cut(s) 358, 544, 552, 727, 847
BspT107I GGYRCC 1 cut(s) 542
BspTI CTTAAG 1 cut(s) 629
BspTNI GGTCTC 2 cut(s) 749, 922
BsrDI GCAATG 1 cut(s) 306
BsrFI RCCGGY 1 cut(s) 359
BsrI ACTGG 2 cut(s) 650, 979
BssAI RCCGGY 1 cut(s) 359
BssECI CCNNGG 6 cut(s) 177, 367, 546, 730, 828, 1137
BssMI GATC 3 cut(s) 66, 168, 759
BssT1I CCWWGG 5 cut(s) 177, 367, 546, 730, 828
Bst2UI CCWGG 3 cut(s) 487, 1035, 1138
Bst4CI ACNGT 6 cut(s) 187, 326, 520, 571, 601, 779
Bst6I CTCTTC 1 cut(s) 1111
BstAFI CTTAAG 1 cut(s) 629
BstC8I GCNNGC 2 cut(s) 91, 451
BstDEI CTNAG 7 cut(s) 24, 405, 419, 491, 811, 870, 939
BstDSI CCRYGG 2 cut(s) 546, 730
BstEII GGTNACC 1 cut(s) 362
BstF5I GGATG 3 cut(s) 654, 788, 897
BstFNI CGCG 1 cut(s) 222
BstHHI GCGC 2 cut(s) 224, 485
BstKTI GATC 3 cut(s) 69, 171, 762
BstMAI GTCTC 8 cut(s) 122, 241, 729, 749, 853, 922, 965, 1113
BstMBI GATC 3 cut(s) 66, 168, 759
BstMWI GCNNNNNNNGC 1 cut(s) 902
BstNI CCWGG 3 cut(s) 487, 1035, 1138
BstNSI RCATGY 3 cut(s) 135, 379, 641
BstPAI GACNNNNGTC 2 cut(s) 216, 741
BstPI GGTNACC 1 cut(s) 362
BstSCI CCNGG 4 cut(s) 485, 749, 1033, 1136
BstSLI GKGCMC 1 cut(s) 375
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 878
BstX2I RGATCY 1 cut(s) 66
BstXI CCANNNNNNTGG 1 cut(s) 1161
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 1 cut(s) 708
BtgI CCRYGG 2 cut(s) 546, 730
BtsCI GGATG 3 cut(s) 654, 788, 897
BtsIMutI CAGTG 2 cut(s) 390, 516
Cac8I GCNNGC 2 cut(s) 91, 451
CfoI GCGC 2 cut(s) 224, 485
Cfr10I RCCGGY 1 cut(s) 359
Cfr13I GGNCC 2 cut(s) 550, 725
CseI GACGC 1 cut(s) 746
Csp6I GTAC 3 cut(s) 477, 526, 667
CviAII CATG 8 cut(s) 132, 148, 154, 376, 425, 547, 638, 731
CviQI GTAC 3 cut(s) 477, 526, 667
DdeI CTNAG 7 cut(s) 24, 405, 419, 491, 811, 870, 939
DpnI GATC 3 cut(s) 68, 170, 761
DpnII GATC 3 cut(s) 66, 168, 759
Eam1104I CTCTTC 1 cut(s) 1111
EarI CTCTTC 1 cut(s) 1111
Ecl136II GAGCTC 1 cut(s) 791
Eco130I CCWWGG 5 cut(s) 177, 367, 546, 730, 828
Eco24I GRGCYC 3 cut(s) 302, 793, 907
Eco31I GGTCTC 2 cut(s) 749, 922
Eco47I GGWCC 2 cut(s) 550, 725
Eco53kI GAGCTC 1 cut(s) 791
Eco57I CTGAAG 3 cut(s) 366, 687, 1012
Eco91I GGTNACC 1 cut(s) 362
EcoICRI GAGCTC 1 cut(s) 791
EcoO65I GGTNACC 1 cut(s) 362
EcoRII CCWGG 3 cut(s) 485, 1033, 1136
EcoT14I CCWWGG 5 cut(s) 177, 367, 546, 730, 828
EcoT38I GRGCYC 3 cut(s) 302, 793, 907
ErhI CCWWGG 5 cut(s) 177, 367, 546, 730, 828
Esp3I CGTCTC 2 cut(s) 729, 1113
FaeI CATG 8 cut(s) 135, 151, 157, 379, 428, 550, 641, 734
FalI AAGNNNNNCTT 2 cut(s) 1004, 1036
FaqI GGGAC 4 cut(s) 54, 536, 920, 1178
FatI CATG 8 cut(s) 131, 147, 153, 375, 424, 546, 637, 730
FblI GTMKAC 1 cut(s) 834
Fnu4HI GCNGC 2 cut(s) 867, 1098
FokI GGATG 3 cut(s) 641, 795, 904
FriOI GRGCYC 3 cut(s) 302, 793, 907
Fsp4HI GCNGC 2 cut(s) 867, 1098
FspBI CTAG 2 cut(s) 278, 671
GlaI GCGC 2 cut(s) 223, 484
GluI GCNGC 2 cut(s) 867, 1098
HaeIII GGCC 1 cut(s) 708
HapII CCGG 2 cut(s) 360, 750
HgaI GACGC 1 cut(s) 746
HhaI GCGC 2 cut(s) 224, 485
Hin1II CATG 8 cut(s) 135, 151, 157, 379, 428, 550, 641, 734
Hin6I GCGC 2 cut(s) 222, 483
HinP1I GCGC 2 cut(s) 222, 483
HincII GTYRAC 3 cut(s) 190, 283, 835
HindII GTYRAC 3 cut(s) 190, 283, 835
HindIII AAGCTT 1 cut(s) 1176
HinfI GANTC 4 cut(s) 26, 711, 933, 982
HpaII CCGG 2 cut(s) 360, 750
HphI GGTGA 5 cut(s) 176, 325, 374, 739, 1126
Hpy166II GTNNAC 8 cut(s) 34, 190, 283, 322, 565, 725, 835, 961
Hpy188I TCNGA 5 cut(s) 25, 73, 241, 467, 1031
Hpy188III TCNNGA 4 cut(s) 254, 344, 986, 1087
Hpy8I GTNNAC 8 cut(s) 34, 190, 283, 322, 565, 725, 835, 961
Hpy99I CGWCG 1 cut(s) 614
HpyAV CCTTC 3 cut(s) 711, 1006, 1074
HpyCH4III ACNGT 6 cut(s) 187, 326, 520, 571, 601, 779
HpyCH4V TGCA 4 cut(s) 77, 135, 270, 806
HpyF10VI GCNNNNNNNGC 1 cut(s) 902
HpyF3I CTNAG 7 cut(s) 24, 405, 419, 491, 811, 870, 939
Hsp92II CATG 8 cut(s) 135, 151, 157, 379, 428, 550, 641, 734
HspAI GCGC 2 cut(s) 222, 483
Kzo9I GATC 3 cut(s) 66, 168, 759
LmnI GCTCC 4 cut(s) 356, 634, 788, 845
Lsp1109I GCAGC 1 cut(s) 878
LweI GCATC 3 cut(s) 64, 76, 247
MaeI CTAG 2 cut(s) 278, 671
MaeIII GTNAC 7 cut(s) 59, 209, 326, 362, 514, 601, 623
MalI GATC 3 cut(s) 68, 170, 761
MboI GATC 3 cut(s) 66, 168, 759
MboII GAAGA 4 cut(s) 211, 359, 679, 1128
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 5 cut(s) 302, 375, 451, 793, 907
MluCI AATT 3 cut(s) 351, 615, 1047
MlyI GAGTC 2 cut(s) 35, 942
MnlI CCTC 7 cut(s) 31, 92, 584, 791, 1061, 1064, 1182
MseI TTAA 4 cut(s) 410, 630, 1050, 1180
MslI CAYNNNNRTG 2 cut(s) 152, 1159
MspCI CTTAAG 1 cut(s) 629
MspI CCGG 2 cut(s) 360, 750
MspR9I CCNGG 4 cut(s) 487, 751, 1035, 1138
Mva1269I GAATGC 1 cut(s) 806
MvaI CCWGG 3 cut(s) 487, 1035, 1138
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 902
NciI CCSGG 1 cut(s) 751
NcoI CCATGG 2 cut(s) 546, 730
NdeII GATC 3 cut(s) 66, 168, 759
NlaIII CATG 8 cut(s) 135, 151, 157, 379, 428, 550, 641, 734
NlaIV GGNNCC 5 cut(s) 358, 544, 552, 727, 847
NmuCI GTSAC 7 cut(s) 59, 209, 326, 362, 514, 601, 623
NspI RCATGY 3 cut(s) 135, 379, 641
OliI CACNNNNGTG 1 cut(s) 1159
PciI ACATGT 1 cut(s) 375
PctI GAATGC 1 cut(s) 806
PfeI GAWTC 2 cut(s) 711, 982
PkrI GCNGC 2 cut(s) 868, 1099
PleI GAGTC 2 cut(s) 34, 941
PpsI GAGTC 2 cut(s) 34, 941
PscI ACATGT 1 cut(s) 375
PshAI GACNNNNGTC 2 cut(s) 216, 741
Psp124BI GAGCTC 1 cut(s) 793
Psp6I CCWGG 3 cut(s) 485, 1033, 1136
PspEI GGTNACC 1 cut(s) 362
PspGI CCWGG 3 cut(s) 485, 1033, 1136
PspN4I GGNNCC 5 cut(s) 358, 544, 552, 727, 847
PspPI GGNCC 2 cut(s) 550, 725
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 3 cut(s) 478, 527, 668
RsaNI GTAC 3 cut(s) 477, 526, 667
RseI CAYNNNNRTG 2 cut(s) 152, 1159
SacI GAGCTC 1 cut(s) 793
SalI GTCGAC 1 cut(s) 833
SaqAI TTAA 4 cut(s) 410, 630, 1050, 1180
SatI GCNGC 2 cut(s) 867, 1098
Sau3AI GATC 3 cut(s) 66, 168, 759
Sau96I GGNCC 2 cut(s) 550, 725
ScaI AGTACT 1 cut(s) 527
SchI GAGTC 2 cut(s) 35, 942
ScrFI CCNGG 4 cut(s) 487, 751, 1035, 1138
SduI GDGCHC 5 cut(s) 302, 375, 451, 793, 907
SfaNI GCATC 3 cut(s) 64, 76, 247
SinI GGWCC 2 cut(s) 550, 725
SmiMI CAYNNNNRTG 2 cut(s) 152, 1159
SmlI CTYRAG 4 cut(s) 312, 629, 1157, 1173
SmoI CTYRAG 4 cut(s) 312, 629, 1157, 1173
Sse9I AATT 3 cut(s) 351, 615, 1047
SsiI CCGC 3 cut(s) 801, 843, 1097
SspMI CTAG 2 cut(s) 278, 671
SstI GAGCTC 1 cut(s) 793
StyD4I CCNGG 4 cut(s) 485, 749, 1033, 1136
StyI CCWWGG 5 cut(s) 177, 367, 546, 730, 828
TaaI ACNGT 6 cut(s) 187, 326, 520, 571, 601, 779
TaqI TCGA 4 cut(s) 84, 768, 834, 1023
TasI AATT 3 cut(s) 351, 615, 1047
TatI WGTACW 1 cut(s) 525
TauI GCSGC 1 cut(s) 1100
TfiI GAWTC 2 cut(s) 711, 982
Tru1I TTAA 4 cut(s) 410, 630, 1050, 1180
Tru9I TTAA 4 cut(s) 410, 630, 1050, 1180
TscAI CASTG 2 cut(s) 397, 523
TseFI GTSAC 7 cut(s) 59, 209, 326, 362, 514, 601, 623
TseI GCWGC 1 cut(s) 866
Tsp45I GTSAC 7 cut(s) 59, 209, 326, 362, 514, 601, 623
TspDTI ATGAA 2 cut(s) 411, 609
TspGWI ACGGA 5 cut(s) 197, 548, 810, 1092, 1119
TspRI CASTG 2 cut(s) 397, 523
Vha464I CTTAAG 1 cut(s) 629
VpaK11BI GGWCC 2 cut(s) 550, 725
XceI RCATGY 3 cut(s) 135, 379, 641
XcmI CCANNNNNNNNNTGG 3 cut(s) 145, 151, 737
XmiI GTMKAC 1 cut(s) 834
XspI CTAG 2 cut(s) 278, 671
ZrmI AGTACT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.