Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007338.1

Orthogroup ID

OG0002178

Physical Location & Seq

Genomic Coordinates Forward (+)

21389 .. 22555

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007338.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

atggacaccttcctcttcacctccgagtctgtgaatgagggacaccccgataaactctgtgatcagatttccgatgcagtgcttgatgcctgccttgaacaagatcctgacagcaaagttgcctgtgagacctgcaccaagaccaacatggtcatggtcttcggagagatcacaactaaagccgaagtggactatgagaagatagtgcgcaacacctgccgcagcattggatttgtttcgggtgatgtaggccttgatgctgataactgcaaggtcctcgtgaacattgagcaacaaagccctgatatagctcagggtgtgcatggccacctcaccaagaggcctgaggagattggtgcaggagaccagggtcacatgtttggttatgctactgatgagacccctgagcttatgcctctaagccatgttcttgctaccaagcttggtgctcgtctcactgatgttcgaaagaatggcacctgcccttggctgagacctgatggcaagactcaagtcactgttgagtactacaatgaccatggtgctatggttccaatccgtgtccacactgttctcatttctacccagcatgatgagactgttaccaatgatgaaattgcagctgacctcaagaaacatgtcattaagccagttgttcctgagaagtacctagatgagaagactatcttccatctcaacccttcaggtcgatttgtgattggtggaccgcatggtgatgcaggtctaactggccgaaaaatcatcattgatacctatggtggttggggagcacatggcggtggtgccttctccggcaaggaccctaccaaggtagacaggagtggtgcctacattgttaggcaggctgctaagagcattgtagccaatggacttgctagaaggtgcatagtgcaggtctcatatgcaattggtgtccctgagccactatcggtgtttgttgacacttatgggactggaaagattccggacaaggagattctgaagttagttaaggaggcctttgattttaggcctggaatgattgccattaacttggatctcaagagaggaaggtatttgaaaacggctgcttatggacactttggtagagatgaccctgacttttcgtgggaagtggtgaagtccttgaagtgggaaaaggcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004478 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016740 GO:0016765 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 ko01230 map00270 map01100 map01110 map01230

Pfam Domains

Protein Families

S-AdoMet_synt_C S-AdoMet_synt_M S-AdoMet_synt_N

Protein Analysis

388

Amino Acids

42.51

Weight (kDa)

5.83

Isoelectric Point (pI)

24.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02500 AT1G02500 AT4G01850 AT4G01850
fragaria_vesca	FvH4_1g26460 FvH4_1g26460 FvH4_1g26460 FvH4_6g08370 FvH4_6g08370 FvH4_6g08370 FvH4_6g08370
malus_domestica	MD04G1187700.v1.1 MD09G1292700.v1.1 MD12G1201100.v1.1 MD17G1283400.v1.1
prunus_persica	Prupe.3G004000_v2.0.a1 Prupe.6G306200_v2.0.a1
pyrus_communis	pycom04g16600 pycom09g19680 pycom12g18740 pycom17g27940
rosa_chinensis	RchiOBHm_Chr3g0458271 RchiOBHm_Chr3g0486231
rosa_laevigata	RLG00000023092 RLG00000025170
rosa_multiflora	Rmu_sc0007338.1_g000005 Rmu_sc0007661.1_g000004 Rmu_sc0009883.1_g000007
rosa_roxburghii	Rroxscaffold_6G00395970 Rroxscaffold_6G00421180
rosa_rugosa	Rorug03G0025700 Rorug03G0025700 Rorug03G0224100
rosa_samantha	Rh3AG086500 Rh3AG274100 Rh3BG089200 Rh3BG309400 Rh3CG089900 Rh3CG307700 Rh3DG090300 Rh3DG304100
rosa_wichuraiana	Rw3G007340 Rw3G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	224, 488
Acc16I	TGCGCA	1 cut(s)	209
Acc36I	ACCTGC	5 cut(s)	140, 224, 488, 731, 904
AccB1I	GGYRCC	3 cut(s)	476, 803, 845
AccI	GTMKAC	1 cut(s)	834
AccIII	TCCGGA	1 cut(s)	985
AciI	CCGC	3 cut(s)	220, 728, 798
AclWI	GGATC	2 cut(s)	98, 1065
AcoI	YGGCCR	2 cut(s)	325, 751
AcuI	CTGAAG	2 cut(s)	687, 1022
AfaI	GTAC	2 cut(s)	527, 668
AfiI	CCNNNNNNNGG	3 cut(s)	486, 829, 1152
AflIII	ACRYGT	2 cut(s)	375, 637
AgsI	TTSAA	3 cut(s)	98, 1081, 1150
AjnI	CCWGG	2 cut(s)	366, 1033
AluBI	AGCT	4 cut(s)	311, 409, 442, 623
AluI	AGCT	4 cut(s)	311, 409, 442, 623
Alw21I	GWGCWC	2 cut(s)	451, 793
Alw26I	GTCTC	7 cut(s)	122, 357, 392, 458, 487, 590, 922
AlwI	GGATC	2 cut(s)	98, 1065
Aor13HI	TCCGGA	1 cut(s)	985
AoxI	GGCC	6 cut(s)	250, 325, 341, 751, 1017, 1031
ApeKI	GCWGC	4 cut(s)	222, 620, 866, 1088
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	3 cut(s)	274, 725, 820
AsuHPI	GGTGA	5 cut(s)	10, 254, 325, 746, 1150
AsuII	TTCGAA	1 cut(s)	466
AvaII	GGWCC	3 cut(s)	274, 725, 820
AxyI	CCTNAGG	1 cut(s)	345
BalI	TGGCCA	1 cut(s)	327
BanI	GGYRCC	3 cut(s)	476, 803, 845
BauI	CACGAG	1 cut(s)	278
BbsI	GAAGAC	2 cut(s)	151, 686
Bbv12I	GWGCWC	2 cut(s)	451, 793
BbvI	GCAGC	4 cut(s)	234, 632, 853, 1075
BccI	CCATC	2 cut(s)	494, 699
BceAI	ACGGC	1 cut(s)	1101
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BciT130I	CCWGG	2 cut(s)	368, 1035
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	7 cut(s)	122, 357, 392, 458, 487, 590, 922
BfaI	CTAG	2 cut(s)	671, 897
BfuAI	ACCTGC	5 cut(s)	140, 224, 488, 731, 904
BisI	GCNGC	5 cut(s)	220, 223, 621, 867, 1089
BlsI	GCNGC	5 cut(s)	221, 224, 622, 868, 1090
BmcAI	AGTACT	1 cut(s)	527
Bme1390I	CCNGG	2 cut(s)	368, 1035
Bme18I	GGWCC	3 cut(s)	274, 725, 820
BmgT120I	GGNCC	3 cut(s)	274, 725, 820
BmiI	GGNNCC	5 cut(s)	478, 552, 805, 822, 847
BmrFI	CCNGG	2 cut(s)	368, 1035
BmsI	GCATC	4 cut(s)	64, 76, 247, 727
BoxI	GACNNNNGTC	2 cut(s)	369, 512
BpiI	GAAGAC	2 cut(s)	151, 686
Bpu10I	CCTNAGC	3 cut(s)	312, 405, 939
Bpu14I	TTCGAA	1 cut(s)	466
BpuEI	CTTGAG	3 cut(s)	495, 614, 1046
BsaI	GGTCTC	5 cut(s)	122, 357, 392, 487, 922
BsaJI	CCNNGG	4 cut(s)	367, 485, 538, 828
BsaWI	WCCGGW	1 cut(s)	985
Bsc4I	CCNNNNNNNGG	3 cut(s)	486, 829, 1152
Bse1I	ACTGG	3 cut(s)	650, 754, 979
Bse21I	CCTNAGG	1 cut(s)	345
BseAI	TCCGGA	1 cut(s)	985
BseBI	CCWGG	2 cut(s)	368, 1035
BseDI	CCNNGG	4 cut(s)	367, 485, 538, 828
BseLI	CCNNNNNNNGG	3 cut(s)	486, 829, 1152
BseMII	CTCAG	6 cut(s)	326, 336, 396, 482, 651, 930
BseNI	ACTGG	3 cut(s)	650, 754, 979
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	4 cut(s)	234, 632, 853, 1075
BseYI	CCCAGC	1 cut(s)	585
BsgI	GTGCAG	3 cut(s)	118, 378, 932
BshFI	GGCC	6 cut(s)	252, 327, 343, 753, 1019, 1033
BshNI	GGYRCC	3 cut(s)	476, 803, 845
BsiHKAI	GWGCWC	2 cut(s)	451, 793
BsiSI	CCGG	2 cut(s)	813, 986
BslFI	GGGAC	3 cut(s)	54, 920, 985
BslI	CCNNNNNNNGG	3 cut(s)	486, 829, 1152
BsmAI	GTCTC	7 cut(s)	122, 357, 392, 458, 487, 590, 922
BsmBI	CGTCTC	1 cut(s)	458
BsmFI	GGGAC	3 cut(s)	54, 920, 985
BsnI	GGCC	6 cut(s)	252, 327, 343, 753, 1019, 1033
Bso31I	GGTCTC	5 cut(s)	122, 357, 392, 487, 922
Bsp119I	TTCGAA	1 cut(s)	466
Bsp1286I	GDGCHC	2 cut(s)	451, 793
Bsp13I	TCCGGA	1 cut(s)	985
Bsp143I	GATC	4 cut(s)	61, 103, 168, 1057
Bsp19I	CCATGG	1 cut(s)	538
BspACI	CCGC	3 cut(s)	220, 728, 798
BspANI	GGCC	6 cut(s)	252, 327, 343, 753, 1019, 1033
BspCNI	CTCAG	6 cut(s)	325, 337, 397, 483, 652, 931
BspEI	TCCGGA	1 cut(s)	985
BspLI	GGNNCC	5 cut(s)	478, 552, 805, 822, 847
BspMI	ACCTGC	5 cut(s)	140, 224, 488, 731, 904
BspPI	GGATC	2 cut(s)	98, 1065
BspT104I	TTCGAA	1 cut(s)	466
BspT107I	GGYRCC	3 cut(s)	476, 803, 845
BspTNI	GGTCTC	5 cut(s)	122, 357, 392, 487, 922
BsrI	ACTGG	3 cut(s)	650, 754, 979
BssECI	CCNNGG	4 cut(s)	367, 485, 538, 828
BssMI	GATC	4 cut(s)	61, 103, 168, 1057
BssSI	CACGAG	1 cut(s)	278
BssT1I	CCWWGG	3 cut(s)	485, 538, 828
Bst2BI	CACGAG	1 cut(s)	278
Bst2UI	CCWGG	2 cut(s)	368, 1035
Bst4CI	ACNGT	3 cut(s)	520, 571, 601
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	216
BstBI	TTCGAA	1 cut(s)	466
BstC8I	GCNNGC	2 cut(s)	91, 864
BstDEI	CTNAG	8 cut(s)	312, 345, 405, 419, 491, 660, 870, 939
BstDSI	CCRYGG	1 cut(s)	538
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	4 cut(s)	64, 106, 171, 1060
BstMAI	GTCTC	7 cut(s)	122, 357, 392, 458, 487, 590, 922
BstMBI	GATC	4 cut(s)	61, 103, 168, 1057
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstNI	CCWGG	2 cut(s)	368, 1035
BstNSI	RCATGY	2 cut(s)	379, 641
BstPAI	GACNNNNGTC	2 cut(s)	369, 512
BstSCI	CCNGG	2 cut(s)	366, 1033
BstV1I	GCAGC	4 cut(s)	234, 632, 853, 1075
BstV2I	GAAGAC	2 cut(s)	151, 686
BstX2I	RGATCY	2 cut(s)	103, 1057
BstXI	CCANNNNNNTGG	1 cut(s)	1054
BstYI	RGATCY	2 cut(s)	103, 1057
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	6 cut(s)	252, 327, 343, 753, 1019, 1033
BtgI	CCRYGG	1 cut(s)	538
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	4 cut(s)	84, 456, 516, 567
BveI	ACCTGC	5 cut(s)	140, 224, 488, 731, 904
Cac8I	GCNNGC	2 cut(s)	91, 864
CfoI	GCGC	1 cut(s)	210
Cfr13I	GGNCC	3 cut(s)	274, 725, 820
Csp6I	GTAC	2 cut(s)	526, 667
CviQI	GTAC	2 cut(s)	526, 667
DdeI	CTNAG	8 cut(s)	312, 345, 405, 419, 491, 660, 870, 939
DpnI	GATC	4 cut(s)	63, 105, 170, 1059
DpnII	GATC	4 cut(s)	61, 103, 168, 1057
EaeI	YGGCCR	2 cut(s)	325, 751
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	3 cut(s)	485, 538, 828
Eco147I	AGGCCT	4 cut(s)	252, 343, 1019, 1033
Eco31I	GGTCTC	5 cut(s)	122, 357, 392, 487, 922
Eco47I	GGWCC	3 cut(s)	274, 725, 820
Eco57I	CTGAAG	2 cut(s)	687, 1022
Eco81I	CCTNAGG	1 cut(s)	345
EcoO109I	RGGNCCY	2 cut(s)	274, 820
EcoRII	CCWGG	2 cut(s)	366, 1033
EcoT14I	CCWWGG	3 cut(s)	485, 538, 828
ErhI	CCWWGG	3 cut(s)	485, 538, 828
Esp3I	CGTCTC	1 cut(s)	458
FalI	AAGNNNNNCTT	4 cut(s)	671, 703, 1004, 1036
FaqI	GGGAC	3 cut(s)	54, 920, 985
FauNDI	CATATG	1 cut(s)	922
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	834
Fnu4HI	GCNGC	5 cut(s)	220, 223, 621, 867, 1089
Fsp4HI	GCNGC	5 cut(s)	220, 223, 621, 867, 1089
FspBI	CTAG	2 cut(s)	671, 897
FspI	TGCGCA	1 cut(s)	209
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	5 cut(s)	220, 223, 621, 867, 1089
GsaI	CCCAGC	1 cut(s)	589
HaeIII	GGCC	6 cut(s)	252, 327, 343, 753, 1019, 1033
HapII	CCGG	2 cut(s)	813, 986
HhaI	GCGC	1 cut(s)	210
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HincII	GTYRAC	1 cut(s)	961
HindII	GTYRAC	1 cut(s)	961
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	4 cut(s)	26, 508, 982, 997
HpaII	CCGG	2 cut(s)	813, 986
HphI	GGTGA	5 cut(s)	10, 254, 325, 746, 1150
Hpy166II	GTNNAC	6 cut(s)	190, 283, 565, 725, 835, 961
Hpy188I	TCNGA	5 cut(s)	25, 66, 73, 164, 1002
Hpy188III	TCNNGA	6 cut(s)	107, 280, 631, 659, 986, 1063
Hpy8I	GTNNAC	6 cut(s)	190, 283, 565, 725, 835, 961
HpyAV	CCTTC	5 cut(s)	19, 711, 817, 894, 1065
HpyCH4III	ACNGT	3 cut(s)	520, 571, 601
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
HpyF3I	CTNAG	8 cut(s)	312, 345, 405, 419, 491, 660, 870, 939
HspAI	GCGC	1 cut(s)	208
Kpn2I	TCCGGA	1 cut(s)	985
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	4 cut(s)	61, 103, 168, 1057
LmnI	GCTCC	1 cut(s)	788
Lsp1109I	GCAGC	4 cut(s)	234, 632, 853, 1075
LweI	GCATC	4 cut(s)	64, 76, 247, 727
MaeI	CTAG	2 cut(s)	671, 897
MaeIII	GTNAC	3 cut(s)	371, 514, 601
MalI	GATC	4 cut(s)	63, 105, 170, 1059
MboI	GATC	4 cut(s)	61, 103, 168, 1057
MboII	GAAGA	5 cut(s)	7, 151, 211, 679, 691
MfeI	CAATTG	1 cut(s)	927
MflI	RGATCY	2 cut(s)	103, 1057
MhlI	GDGCHC	2 cut(s)	451, 793
MlsI	TGGCCA	1 cut(s)	327
MluCI	AATT	2 cut(s)	615, 927
MluNI	TGGCCA	1 cut(s)	327
MlyI	GAGTC	2 cut(s)	35, 502
Mox20I	TGGCCA	1 cut(s)	327
MroI	TCCGGA	1 cut(s)	985
MscI	TGGCCA	1 cut(s)	327
MseI	TTAA	3 cut(s)	645, 1011, 1050
MslI	CAYNNNNRTG	3 cut(s)	152, 735, 798
Msp20I	TGGCCA	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	2 cut(s)	813, 986
MspR9I	CCNGG	2 cut(s)	368, 1035
MunI	CAATTG	1 cut(s)	927
MvaI	CCWGG	2 cut(s)	368, 1035
MwoI	GCNNNNNNNGC	1 cut(s)	216
NcoI	CCATGG	1 cut(s)	538
NdeI	CATATG	1 cut(s)	922
NdeII	GATC	4 cut(s)	61, 103, 168, 1057
NlaIV	GGNNCC	5 cut(s)	478, 552, 805, 822, 847
NmuCI	GTSAC	2 cut(s)	371, 514
NsbI	TGCGCA	1 cut(s)	209
NspI	RCATGY	2 cut(s)	379, 641
NspV	TTCGAA	1 cut(s)	466
PaqCI	CACCTGC	2 cut(s)	224, 488
PceI	AGGCCT	4 cut(s)	252, 343, 1019, 1033
PciI	ACATGT	2 cut(s)	375, 637
PfeI	GAWTC	2 cut(s)	982, 997
PkrI	GCNGC	5 cut(s)	221, 224, 622, 868, 1090
PleI	GAGTC	2 cut(s)	34, 502
PpsI	GAGTC	2 cut(s)	34, 502
PpuMI	RGGWCCY	2 cut(s)	274, 820
PscI	ACATGT	2 cut(s)	375, 637
PshAI	GACNNNNGTC	2 cut(s)	369, 512
Psp5II	RGGWCCY	2 cut(s)	274, 820
Psp6I	CCWGG	2 cut(s)	366, 1033
PspFI	CCCAGC	1 cut(s)	585
PspGI	CCWGG	2 cut(s)	366, 1033
PspN4I	GGNNCC	5 cut(s)	478, 552, 805, 822, 847
PspPI	GGNCC	3 cut(s)	274, 725, 820
PspPPI	RGGWCCY	2 cut(s)	274, 820
PsuI	RGATCY	2 cut(s)	103, 1057
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	2 cut(s)	527, 668
RsaNI	GTAC	2 cut(s)	526, 667
RseI	CAYNNNNRTG	3 cut(s)	152, 735, 798
SaqAI	TTAA	3 cut(s)	645, 1011, 1050
SatI	GCNGC	5 cut(s)	220, 223, 621, 867, 1089
Sau3AI	GATC	4 cut(s)	61, 103, 168, 1057
Sau96I	GGNCC	3 cut(s)	274, 725, 820
ScaI	AGTACT	1 cut(s)	527
SchI	GAGTC	2 cut(s)	35, 502
ScrFI	CCNGG	2 cut(s)	368, 1035
SduI	GDGCHC	2 cut(s)	451, 793
SfaNI	GCATC	4 cut(s)	64, 76, 247, 727
SfuI	TTCGAA	1 cut(s)	466
SinI	GGWCC	3 cut(s)	274, 725, 820
SmiMI	CAYNNNNRTG	3 cut(s)	152, 735, 798
SmlI	CTYRAG	3 cut(s)	510, 629, 1061
SmoI	CTYRAG	3 cut(s)	510, 629, 1061
Sse9I	AATT	2 cut(s)	615, 927
SseBI	AGGCCT	4 cut(s)	252, 343, 1019, 1033
SsiI	CCGC	3 cut(s)	220, 728, 798
SspMI	CTAG	2 cut(s)	671, 897
StuI	AGGCCT	4 cut(s)	252, 343, 1019, 1033
StyD4I	CCNGG	2 cut(s)	366, 1033
StyI	CCWWGG	3 cut(s)	485, 538, 828
TaaI	ACNGT	3 cut(s)	520, 571, 601
TaqI	TCGA	2 cut(s)	466, 709
TasI	AATT	2 cut(s)	615, 927
TatI	WGTACW	1 cut(s)	525
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	2 cut(s)	982, 997
Tru1I	TTAA	3 cut(s)	645, 1011, 1050
Tru9I	TTAA	3 cut(s)	645, 1011, 1050
TscAI	CASTG	4 cut(s)	84, 463, 523, 574
TseFI	GTSAC	2 cut(s)	371, 514
TseI	GCWGC	4 cut(s)	222, 620, 866, 1088
Tsp45I	GTSAC	2 cut(s)	371, 514
TspDTI	ATGAA	1 cut(s)	627
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	4 cut(s)	84, 463, 523, 574
VpaK11BI	GGWCC	3 cut(s)	274, 725, 820
XceI	RCATGY	2 cut(s)	379, 641
XcmI	CCANNNNNNNNNTGG	2 cut(s)	145, 151
XmiI	GTMKAC	1 cut(s)	834
XspI	CTAG	2 cut(s)	671, 897
ZrmI	AGTACT	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.