Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000854

Physical Location & Seq

Genomic Coordinates Forward (+)

2009993 .. 2014658

Gene Structure 4666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0025700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGGGAGGGAAATTACTGGTGTGAAGGAAGAGAAGAAAATTAATGGTGTTGTAGTGGGTACCAATGGTTTTTCTACTGCTAAAATCCATGTCTCTCCCAAAATTTCCGAGAGAATCAGCAGGATCGAGTCCAAGGAGTACAAGGTGAAGGACTCTAATGAAGAGAAAGCAGCTGAGGGGGAAGGTCTTGAGAAGCAAGATATGCTGGCTGTTGAGAGCACGAATCTTGATGATGACTTGACCAAGGAGAATAATGAGAAACCTGGAACTCAGAAGTCAAGTGAGAGTTTAAATTCCAGCTCACCAGTTTCAAAATCTGCTGCTGTAGAAAATGGGCATTCAAATCAGACTGTTCCTCATCCCAATGCTCTGGTAACTGAAAGGGCTGGTACATGTGAAGAGACTGCTGGGGCTGAAGTTGCCACTTCAGAAAACTCCAGCACTGCAGAGTCTCCTAATGCAACTAAGACTTCACAGACTGCCAATGCAGAGTCACCTACTAAGAGTTCAGAGCCAAATTCACCTCGGTCATCACGACCTGATACTAAGAAGCATGCTGAGGAAGAAGATAATTGGTCTCTTACTTCCTCAACTGCTGCATCTGTGAGAACAAATAAATTCAAGGTTACAGTTGGACAAGCTCCTTCGTTTAAATGCAGTGAACGCGCACAAAAAAGAAATGAGTACTACTCGAAGTTAAAGGAAAAACAACAAGCTCTGGAGGCAGAGAGATTGCAGTACGAATCAAGGACCAGGGAAGAGCAAGAAGCAGCCATCAAGCAGCTGAGGAAGTCCTTGGTGATCAAAGCAAAGCCAGTACCTAGTTTCTATTACGAGCCACCTCCTCCTAAGGCTGAACTCAAGAAGCTTCCACTTACGCAGCCCAAGTCACCAAAACTGAACAGTCTAAGCAGGAGAAAGAGCTTTGGTGATGCTCTCAACACATCTCATGACGAAAAGGGAAGAGTTTGTCCTCGAGCACATCGTCACAGCGTTGGTTGCCAGAAAGAATGCACTGCATCGACTACTCCAAAGAATAAGGTGCAGAACAGTAGACATAACAGTCTTGGCAATGGTAGCAAAGTCAAAGACCAATCAAAACAGGGAGAAGAAGAAACAACGAAAACAGCTCCTAAGTTCACCCAGAAGAGAAACGTAGACATCAGTTTGAATCATGAACTCGAAAGCTTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004478 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016740 GO:0016765 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 ko01230 map00270 map01100 map01110 map01230

Pfam Domains

Protein Families

S-AdoMet_synt_C S-AdoMet_synt_M S-AdoMet_synt_N

Protein Analysis

398

Amino Acids

43.83

Weight (kDa)

9.07

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2	PF06886	216 - 285	7e-24	Targeting protein for Xklp2 (TPX2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47090 AT2G47090 AT2G47090 AT2G47090 AT2G47090 AT3G62240
fragaria_vesca	FvH4_3g07600 FvH4_6g08350 FvH4_6g08350 FvH4_6g08350 FvH4_6g08350 FvH4_7g03760 FvH4_7g03760 FvH4_7g03760
malus_domestica	MD02G1277600.v1.1 MD04G1187900.v1.1 MD07G1045700.v1.1
prunus_persica	Prupe.2G042900_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1
pyrus_communis	pycom02g23760 pycom02g23770 pycom04g16610 pycom04g16640 pycom07g03260 pycom07g03270
rosa_chinensis	RchiOBHm_Chr1g0326951 RchiOBHm_Chr3g0458251 RchiOBHm_Chr5g0011091
rosa_laevigata	RLG00000025171 RLG00000030049 RLG00000031809
rosa_multiflora	Rmu_co8031236.1_g000001 Rmu_co8098122.1_g000001 Rmu_co8217558.1_g000001 Rmu_co8502817.1_g000001 Rmu_sc0000795.1_g000001 Rmu_sc0003315.1_g000001 Rmu_sc0005999.1_g000013 Rmu_sc0007338.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065320 Rroxscaffold_4G00323480 Rroxscaffold_6G00421200
rosa_rugosa	Rorug01G0062400 Rorug01G0062500 Rorug03G0025600 Rorug03G0025700
rosa_samantha	Rh1AG079500 Rh1BG063700 Rh1CG077100 Rh1DG083600 Rh3AG086400 Rh3BG089100 Rh3CG089700 Rh3DG090200 Rh5AG087400 Rh5BG082200 Rh5CG095000 Rh5DG081800
rosa_wichuraiana	Rw0G000180 Rw0G017770 Rw1G006310 Rw3G007330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1062
Acc65I	GGTACC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	59
AccI	GTMKAC	2 cut(s)	1054, 1158
AccII	CGCG	1 cut(s)	666
AclWI	GGATC	1 cut(s)	131
AcsI	RAATTY	4 cut(s)	102, 292, 517, 617
AcuI	CTGAAG	2 cut(s)	411, 435
AfaI	GTAC	6 cut(s)	61, 140, 391, 686, 740, 819
AflIII	ACRYGT	1 cut(s)	392
AgsI	TTSAA	4 cut(s)	312, 342, 622, 1171
AjnI	CCWGG	2 cut(s)	262, 752
AluBI	AGCT	9 cut(s)	173, 300, 641, 716, 784, 868, 924, 1130, 1188
AluI	AGCT	9 cut(s)	173, 300, 641, 716, 784, 868, 924, 1130, 1188
Alw21I	GWGCWC	2 cut(s)	221, 982
Alw26I	GTCTC	4 cut(s)	97, 395, 456, 582
AlwI	GGATC	1 cut(s)	131
Ama87I	CYCGRG	1 cut(s)	975
ApeKI	GCWGC	6 cut(s)	170, 320, 596, 770, 781, 880
ApoI	RAATTY	4 cut(s)	102, 292, 517, 617
AseI	ATTAAT	1 cut(s)	42
Asp718I	GGTACC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	668
AspS9I	GGNCC	1 cut(s)	750
AsuHPI	GGTGA	8 cut(s)	157, 294, 486, 513, 811, 882, 941, 1132
AvaI	CYCGRG	1 cut(s)	975
AvaII	GGWCC	1 cut(s)	750
AxyI	CCTNAGG	1 cut(s)	849
BanI	GGYRCC	1 cut(s)	59
Bbv12I	GWGCWC	2 cut(s)	221, 982
BbvCI	CCTCAGC	3 cut(s)	174, 558, 785
BbvI	GCAGC	6 cut(s)	182, 307, 583, 782, 793, 892
BccI	CCATC	1 cut(s)	782
BciT130I	CCWGG	2 cut(s)	264, 754
BclI	TGATCA	1 cut(s)	801
BcoDI	GTCTC	4 cut(s)	97, 395, 456, 582
BfaI	CTAG	1 cut(s)	822
BfmI	CTRYAG	2 cut(s)	324, 444
BisI	GCNGC	6 cut(s)	171, 321, 597, 771, 782, 881
BlsI	GCNGC	6 cut(s)	172, 322, 598, 772, 783, 882
BmcAI	AGTACT	1 cut(s)	686
Bme1390I	CCNGG	2 cut(s)	264, 754
Bme18I	GGWCC	1 cut(s)	750
BmeT110I	CYCGRG	1 cut(s)	975
BmgT120I	GGNCC	1 cut(s)	750
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	264, 754
BmsI	GCATC	3 cut(s)	608, 922, 1028
BplI	GAGNNNNNCTC	2 cut(s)	674, 706
BpmI	CTGGAG	2 cut(s)	421, 740
Bpu10I	CCTNAGC	3 cut(s)	174, 558, 785
BpuEI	CTTGAG	2 cut(s)	209, 845
BsaI	GGTCTC	1 cut(s)	582
BsaJI	CCNNGG	5 cut(s)	132, 243, 524, 753, 795
Bse1I	ACTGG	3 cut(s)	22, 305, 815
Bse21I	CCTNAGG	1 cut(s)	849
Bse3DI	GCAATG	1 cut(s)	1078
BseBI	CCWGG	2 cut(s)	264, 754
BseDI	CCNNGG	5 cut(s)	132, 243, 524, 753, 795
BseGI	GGATG	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	1078
BseMII	CTCAG	4 cut(s)	165, 284, 549, 776
BseNI	ACTGG	3 cut(s)	22, 305, 815
BseRI	GAGGAG	1 cut(s)	834
BseXI	GCAGC	6 cut(s)	182, 307, 583, 782, 793, 892
BseYI	CCCAGC	1 cut(s)	407
BsgI	GTGCAG	1 cut(s)	1064
Bsh1236I	CGCG	1 cut(s)	666
BshNI	GGYRCC	1 cut(s)	59
BsiHKAI	GWGCWC	2 cut(s)	221, 982
BsiHKCI	CYCGRG	1 cut(s)	975
BsmAI	GTCTC	4 cut(s)	97, 395, 456, 582
BsmI	GAATGC	2 cut(s)	337, 1016
Bso31I	GGTCTC	1 cut(s)	582
BsoBI	CYCGRG	1 cut(s)	975
Bsp1286I	GDGCHC	2 cut(s)	221, 982
Bsp143I	GATC	2 cut(s)	123, 801
BspCNI	CTCAG	4 cut(s)	166, 283, 550, 777
BspFNI	CGCG	1 cut(s)	666
BspHI	TCATGA	2 cut(s)	949, 1174
BspLI	GGNNCC	1 cut(s)	61
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	1 cut(s)	131
BspQI	GCTCTTC	1 cut(s)	753
BspT107I	GGYRCC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	582
BsrDI	GCAATG	1 cut(s)	1078
BsrI	ACTGG	3 cut(s)	22, 305, 815
BssECI	CCNNGG	5 cut(s)	132, 243, 524, 753, 795
BssMI	GATC	2 cut(s)	123, 801
BssT1I	CCWWGG	3 cut(s)	132, 243, 795
Bst2UI	CCWGG	2 cut(s)	264, 754
Bst4CI	ACNGT	5 cut(s)	352, 631, 905, 1052, 1064
Bst6I	CTCTTC	6 cut(s)	24, 156, 393, 753, 958, 1142
BstAPI	GCANNNNNTGC	1 cut(s)	202
BstC8I	GCNNGC	2 cut(s)	207, 555
BstF5I	GGATG	1 cut(s)	358
BstFNI	CGCG	1 cut(s)	666
BstHHI	GCGC	1 cut(s)	668
BstKTI	GATC	2 cut(s)	126, 804
BstMAI	GTCTC	4 cut(s)	97, 395, 456, 582
BstMBI	GATC	2 cut(s)	123, 801
BstMWI	GCNNNNNNNGC	6 cut(s)	202, 419, 663, 722, 999, 1077
BstNI	CCWGG	2 cut(s)	264, 754
BstNSI	RCATGY	2 cut(s)	396, 557
BstSCI	CCNGG	2 cut(s)	262, 752
BstSFI	CTRYAG	2 cut(s)	324, 444
BstUI	CGCG	1 cut(s)	666
BstV1I	GCAGC	6 cut(s)	182, 307, 583, 782, 793, 892
BstXI	CCANNNNNNTGG	1 cut(s)	370
Bsu36I	CCTNAGG	1 cut(s)	849
BtsCI	GGATG	1 cut(s)	358
BtsI	GCAGTG	3 cut(s)	441, 664, 1014
BtsIMutI	CAGTG	3 cut(s)	441, 664, 1014
Cac8I	GCNNGC	2 cut(s)	207, 555
CciI	TCATGA	2 cut(s)	949, 1174
CfoI	GCGC	1 cut(s)	668
Cfr13I	GGNCC	1 cut(s)	750
Csp6I	GTAC	6 cut(s)	60, 139, 390, 685, 739, 818
CviAII	CATG	5 cut(s)	89, 393, 554, 950, 1175
CviQI	GTAC	6 cut(s)	60, 139, 390, 685, 739, 818
DpnI	GATC	2 cut(s)	125, 803
DpnII	GATC	2 cut(s)	123, 801
DraI	TTTAAA	2 cut(s)	291, 652
DrdI	GACNNNNNNGTC	1 cut(s)	1062
DseDI	GACNNNNNNGTC	1 cut(s)	1062
Eam1104I	CTCTTC	6 cut(s)	24, 156, 393, 753, 958, 1142
EarI	CTCTTC	6 cut(s)	24, 156, 393, 753, 958, 1142
Eco130I	CCWWGG	3 cut(s)	132, 243, 795
Eco31I	GGTCTC	1 cut(s)	582
Eco47I	GGWCC	1 cut(s)	750
Eco57I	CTGAAG	2 cut(s)	411, 435
Eco81I	CCTNAGG	1 cut(s)	849
Eco88I	CYCGRG	1 cut(s)	975
EcoRII	CCWGG	2 cut(s)	262, 752
EcoT14I	CCWWGG	3 cut(s)	132, 243, 795
ErhI	CCWWGG	3 cut(s)	132, 243, 795
FaeI	CATG	5 cut(s)	92, 396, 557, 953, 1178
FaiI	YATR	7 cut(s)	90, 203, 394, 555, 951, 1059, 1176
FatI	CATG	5 cut(s)	88, 392, 553, 949, 1174
FbaI	TGATCA	1 cut(s)	801
FblI	GTMKAC	2 cut(s)	1054, 1158
Fnu4HI	GCNGC	6 cut(s)	171, 321, 597, 771, 782, 881
FokI	GGATG	1 cut(s)	345
Fsp4HI	GCNGC	6 cut(s)	171, 321, 597, 771, 782, 881
FspBI	CTAG	1 cut(s)	822
GlaI	GCGC	1 cut(s)	667
GluI	GCNGC	6 cut(s)	171, 321, 597, 771, 782, 881
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	2 cut(s)	421, 740
HhaI	GCGC	1 cut(s)	668
Hin1II	CATG	5 cut(s)	92, 396, 557, 953, 1178
Hin6I	GCGC	1 cut(s)	666
HinP1I	GCGC	1 cut(s)	666
HindIII	AAGCTT	2 cut(s)	866, 1186
HinfI	GANTC	8 cut(s)	114, 128, 152, 223, 449, 491, 743, 1171
HphI	GGTGA	8 cut(s)	157, 294, 486, 513, 811, 882, 941, 1132
Hpy166II	GTNNAC	4 cut(s)	662, 1055, 1140, 1159
Hpy188I	TCNGA	5 cut(s)	109, 273, 348, 430, 511
Hpy188III	TCNNGA	7 cut(s)	188, 227, 534, 719, 862, 950, 1175
Hpy8I	GTNNAC	4 cut(s)	662, 1055, 1140, 1159
HpyAV	CCTTC	4 cut(s)	19, 142, 176, 654
HpyCH4III	ACNGT	5 cut(s)	352, 631, 905, 1052, 1064
HpyCH4IV	ACGT	1 cut(s)	1155
HpyCH4V	TGCA	9 cut(s)	446, 461, 488, 599, 657, 736, 1014, 1019, 1045
HpyF10VI	GCNNNNNNNGC	6 cut(s)	202, 419, 663, 722, 999, 1077
HpySE526I	ACGT	1 cut(s)	1155
Hsp92II	CATG	5 cut(s)	92, 396, 557, 953, 1178
HspAI	GCGC	1 cut(s)	666
KpnI	GGTACC	1 cut(s)	63
Ksp22I	TGATCA	1 cut(s)	801
Kzo9I	GATC	2 cut(s)	123, 801
LguI	GCTCTTC	1 cut(s)	753
LmnI	GCTCC	2 cut(s)	646, 1135
Lsp1109I	GCAGC	6 cut(s)	182, 307, 583, 782, 793, 892
LweI	GCATC	3 cut(s)	608, 922, 1028
MaeI	CTAG	1 cut(s)	822
MaeII	ACGT	1 cut(s)	1155
MaeIII	GTNAC	5 cut(s)	373, 492, 625, 888, 986
MalI	GATC	2 cut(s)	125, 803
MboI	GATC	2 cut(s)	123, 801
MhlI	GDGCHC	2 cut(s)	221, 982
MluCI	AATT	7 cut(s)	12, 39, 102, 292, 517, 571, 617
MlyI	GAGTC	4 cut(s)	137, 146, 458, 500
MmeI	TCCRAC	1 cut(s)	613
MseI	TTAA	4 cut(s)	42, 290, 651, 698
MslI	CAYNNNNRTG	1 cut(s)	363
MspA1I	CMGCKG	2 cut(s)	173, 784
MspR9I	CCNGG	2 cut(s)	264, 754
Mva1269I	GAATGC	2 cut(s)	337, 1016
MvaI	CCWGG	2 cut(s)	264, 754
MvnI	CGCG	1 cut(s)	666
MwoI	GCNNNNNNNGC	6 cut(s)	202, 419, 663, 722, 999, 1077
NdeII	GATC	2 cut(s)	123, 801
NlaIII	CATG	5 cut(s)	92, 396, 557, 953, 1178
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	3 cut(s)	492, 888, 986
NspI	RCATGY	2 cut(s)	396, 557
PaeI	GCATGC	1 cut(s)	557
PaeR7I	CTCGAG	1 cut(s)	975
PagI	TCATGA	2 cut(s)	949, 1174
PciI	ACATGT	1 cut(s)	392
PciSI	GCTCTTC	1 cut(s)	753
PcsI	WCGNNNNNNNCGW	2 cut(s)	532, 982
PctI	GAATGC	2 cut(s)	337, 1016
PfeI	GAWTC	4 cut(s)	114, 223, 743, 1171
PkrI	GCNGC	6 cut(s)	172, 322, 598, 772, 783, 882
PleI	GAGTC	4 cut(s)	136, 146, 457, 499
PpsI	GAGTC	4 cut(s)	136, 146, 457, 499
PscI	ACATGT	1 cut(s)	392
PshBI	ATTAAT	1 cut(s)	42
Psp6I	CCWGG	2 cut(s)	262, 752
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	2 cut(s)	262, 752
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	750
PspXI	VCTCGAGB	1 cut(s)	975
PstI	CTGCAG	1 cut(s)	448
PvuII	CAGCTG	2 cut(s)	173, 784
RsaI	GTAC	6 cut(s)	61, 140, 391, 686, 740, 819
RsaNI	GTAC	6 cut(s)	60, 139, 390, 685, 739, 818
RseI	CAYNNNNRTG	1 cut(s)	363
SapI	GCTCTTC	1 cut(s)	753
SaqAI	TTAA	4 cut(s)	42, 290, 651, 698
SatI	GCNGC	6 cut(s)	171, 321, 597, 771, 782, 881
Sau3AI	GATC	2 cut(s)	123, 801
Sau96I	GGNCC	1 cut(s)	750
ScaI	AGTACT	1 cut(s)	686
SchI	GAGTC	4 cut(s)	137, 146, 458, 500
ScrFI	CCNGG	2 cut(s)	264, 754
SduI	GDGCHC	2 cut(s)	221, 982
SfaNI	GCATC	3 cut(s)	608, 922, 1028
SfcI	CTRYAG	2 cut(s)	324, 444
Sfr274I	CTCGAG	1 cut(s)	975
SinI	GGWCC	1 cut(s)	750
SlaI	CTCGAG	1 cut(s)	975
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	3 cut(s)	188, 860, 975
SmoI	CTYRAG	3 cut(s)	188, 860, 975
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	7 cut(s)	12, 39, 102, 292, 517, 571, 617
SspMI	CTAG	1 cut(s)	822
StyD4I	CCNGG	2 cut(s)	262, 752
StyI	CCWWGG	3 cut(s)	132, 243, 795
TaaI	ACNGT	5 cut(s)	352, 631, 905, 1052, 1064
TaiI	ACGT	1 cut(s)	1158
TaqI	TCGA	5 cut(s)	126, 692, 976, 1022, 1182
TaqII	GACCGA	1 cut(s)	516
TasI	AATT	7 cut(s)	12, 39, 102, 292, 517, 571, 617
TatI	WGTACW	2 cut(s)	138, 684
TfiI	GAWTC	4 cut(s)	114, 223, 743, 1171
Tru1I	TTAA	4 cut(s)	42, 290, 651, 698
Tru9I	TTAA	4 cut(s)	42, 290, 651, 698
TscAI	CASTG	3 cut(s)	448, 664, 1021
TseFI	GTSAC	3 cut(s)	492, 888, 986
TseI	GCWGC	6 cut(s)	170, 320, 596, 770, 781, 880
Tsp45I	GTSAC	3 cut(s)	492, 888, 986
TspDTI	ATGAA	2 cut(s)	174, 1191
TspRI	CASTG	3 cut(s)	448, 664, 1021
VpaK11BI	GGWCC	1 cut(s)	750
VspI	ATTAAT	1 cut(s)	42
XapI	RAATTY	4 cut(s)	102, 292, 517, 617
XceI	RCATGY	2 cut(s)	396, 557
XhoI	CTCGAG	1 cut(s)	975
XmiI	GTMKAC	2 cut(s)	1054, 1158
XspI	CTAG	1 cut(s)	822
ZrmI	AGTACT	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.