Rorug01G0062500

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000854
Physical Location & Seq
Reverse (-)
10215939 .. 10216609
671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0062500.1

Sequence Viewer

Length: 597 bp
ATGGCCAGCAGTAGCACTTACCCGTTTCCTCATGATCCCCTCGTTAACCTCGCCAATATGGCTGCTGTGAAGGCACGAGATACTGCAGAAGCGTTTTTCAAGCTTCAATACTTCGAGTTGGCGATCAAGCAGGCTATGGTAGCCAAACAATTCGACCCGGATTTGCAAGACGTCGATCACTTCATCCTAGCATACCAGATTCATAAAGCTGTGTCAGAGAAGAAAGATTGGTATCATGTTCTTGGCTTCCAACAGGTTACTGACTATGTAACCATCAAGAAACAATACAAACAATTGGCGCGCTTTGTGCACCCAGACAAGAATAGCTCTGCTGCTGCAGAAGGGGCTTTCAAGCATGTCAAAGCGGCATTGGACTTTCTCTCTGACTCTGCCAAAAAGAAGGCTTACGACAAGTTGTTAAGTACTGGGCAGTTTCAAGGGTCTAAGGTCAAGAACACTCGCAAGAGGGCTTGCCCACAGGCTAAGACCAGTAGAGATGATCGGGATGTTTTCAAGAAGACTATCAAGATAATGAGGAAAACGAACCCAGGTCAAAAGACATGTTGTATGAGGATATCTGTATGTAGGGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.49

Weight (kDa)

9.73

Isoelectric Point (pI)

26.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 76 - 137 4e-17 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 174
AccII CGCG 1 cut(s) 301
AciI CCGC 1 cut(s) 365
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 1 cut(s) 424
AflIII ACRYGT 1 cut(s) 560
AgsI TTSAA 5 cut(s) 100, 107, 352, 437, 514
AjnI CCWGG 1 cut(s) 547
AluBI AGCT 3 cut(s) 103, 209, 327
AluI AGCT 3 cut(s) 103, 209, 327
Alw21I GWGCWC 1 cut(s) 312
Alw44I GTGCAC 1 cut(s) 308
AlwI GGATC 1 cut(s) 29
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 308
ApeKI GCWGC 3 cut(s) 62, 332, 335
AspLEI GCGC 2 cut(s) 301, 303
AsuC2I CCSGG 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 312
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 524
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 3 cut(s) 49, 319, 322
BccI CCATC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 549
BcnI CCSGG 1 cut(s) 158
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 2 cut(s) 84, 336
BglI GCCNNNNNGGC 1 cut(s) 59
BisI GCNGC 4 cut(s) 63, 333, 336, 366
BlsI GCNGC 4 cut(s) 64, 334, 337, 367
BmcAI AGTACT 1 cut(s) 424
Bme1390I CCNGG 2 cut(s) 158, 549
BmrFI CCNGG 2 cut(s) 158, 549
BmrI ACTGGG 1 cut(s) 435
BmuI ACTGGG 1 cut(s) 435
BpiI GAAGAC 1 cut(s) 524
BpuMI CCSGG 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 231
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 547
Bse1I ACTGG 2 cut(s) 430, 489
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 1 cut(s) 549
BseDI CCNNGG 1 cut(s) 547
BseGI GGATG 2 cut(s) 183, 511
BseJI GATNNNNATC 1 cut(s) 231
BseNI ACTGG 2 cut(s) 430, 489
BsePI GCGCGC 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 312
BseXI GCAGC 3 cut(s) 49, 319, 322
Bsh1236I CGCG 1 cut(s) 301
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 1 cut(s) 158
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 4 cut(s) 34, 123, 175, 499
BspACI CCGC 1 cut(s) 365
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 301
BspHI TCATGA 1 cut(s) 31
BspMAI CTGCAG 2 cut(s) 88, 340
BspPI GGATC 1 cut(s) 29
BsrI ACTGG 2 cut(s) 430, 489
BssECI CCNNGG 1 cut(s) 547
BssHII GCGCGC 1 cut(s) 299
BssMI GATC 4 cut(s) 34, 123, 175, 499
BssNI GRCGYC 1 cut(s) 171
BssSI CACGAG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 549
BstACI GRCGYC 1 cut(s) 171
BstC8I GCNNGC 4 cut(s) 7, 132, 301, 472
BstDEI CTNAG 2 cut(s) 444, 483
BstF5I GGATG 2 cut(s) 183, 511
BstFNI CGCG 1 cut(s) 301
BstHHI GCGC 2 cut(s) 301, 303
BstKTI GATC 4 cut(s) 37, 126, 178, 502
BstMBI GATC 4 cut(s) 34, 123, 175, 499
BstMWI GCNNNNNNNGC 5 cut(s) 59, 71, 140, 307, 344
BstNI CCWGG 1 cut(s) 549
BstNSI RCATGY 2 cut(s) 359, 564
BstSCI CCNGG 2 cut(s) 156, 547
BstSFI CTRYAG 2 cut(s) 84, 336
BstSLI GKGCMC 1 cut(s) 312
BstUI CGCG 1 cut(s) 301
BstV1I GCAGC 3 cut(s) 49, 319, 322
BstV2I GAAGAC 1 cut(s) 524
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 183, 511
Cac8I GCNNGC 4 cut(s) 7, 132, 301, 472
CciI TCATGA 1 cut(s) 31
CfoI GCGC 2 cut(s) 301, 303
Csp6I GTAC 1 cut(s) 423
CviAII CATG 4 cut(s) 32, 236, 356, 561
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 2 cut(s) 444, 483
DpnI GATC 4 cut(s) 36, 125, 177, 501
DpnII GATC 4 cut(s) 34, 123, 175, 499
EaeI YGGCCR 1 cut(s) 3
Eco32I GATATC 1 cut(s) 576
EcoRII CCWGG 1 cut(s) 547
EcoRV GATATC 1 cut(s) 576
FaeI CATG 4 cut(s) 35, 239, 359, 564
FatI CATG 4 cut(s) 31, 235, 355, 560
Fnu4HI GCNGC 4 cut(s) 63, 333, 336, 366
FokI GGATG 2 cut(s) 170, 518
Fsp4HI GCNGC 4 cut(s) 63, 333, 336, 366
FspBI CTAG 1 cut(s) 188
GlaI GCGC 2 cut(s) 300, 302
GluI GCNGC 4 cut(s) 63, 333, 336, 366
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 158
HhaI GCGC 2 cut(s) 301, 303
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 4 cut(s) 35, 239, 359, 564
Hin6I GCGC 2 cut(s) 299, 301
HinP1I GCGC 2 cut(s) 299, 301
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 2 cut(s) 199, 386
HpaI GTTAAC 1 cut(s) 46
HpaII CCGG 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 46, 310
Hpy188I TCNGA 2 cut(s) 217, 385
Hpy188III TCNNGA 6 cut(s) 32, 277, 451, 503, 514, 526
Hpy8I GTNNAC 2 cut(s) 46, 310
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 3 cut(s) 64, 335, 394
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 4 cut(s) 86, 166, 310, 338
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 71, 140, 307, 344
HpyF3I CTNAG 2 cut(s) 444, 483
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 4 cut(s) 35, 239, 359, 564
HspAI GCGC 2 cut(s) 299, 301
KspAI GTTAAC 1 cut(s) 46
Kzo9I GATC 4 cut(s) 34, 123, 175, 499
Lsp1109I GCAGC 3 cut(s) 49, 319, 322
MaeI CTAG 1 cut(s) 188
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 2 cut(s) 256, 268
MalI GATC 4 cut(s) 36, 125, 177, 501
MboI GATC 4 cut(s) 34, 123, 175, 499
MboII GAAGA 2 cut(s) 232, 529
MfeI CAATTG 1 cut(s) 293
MhlI GDGCHC 1 cut(s) 312
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 149, 293
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 6 cut(s) 39, 50, 59, 459, 528, 564
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 45, 419
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 2 cut(s) 158, 549
MunI CAATTG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 549
MvnI CGCG 1 cut(s) 301
MwoI GCNNNNNNNGC 5 cut(s) 59, 71, 140, 307, 344
NciI CCSGG 1 cut(s) 158
NdeII GATC 4 cut(s) 34, 123, 175, 499
NlaIII CATG 4 cut(s) 35, 239, 359, 564
NspI RCATGY 2 cut(s) 359, 564
PagI TCATGA 1 cut(s) 31
PauI GCGCGC 1 cut(s) 299
PciI ACATGT 1 cut(s) 560
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 4 cut(s) 64, 334, 337, 367
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
PscI ACATGT 1 cut(s) 560
Psp6I CCWGG 1 cut(s) 547
PspGI CCWGG 1 cut(s) 547
PstI CTGCAG 2 cut(s) 88, 340
PteI GCGCGC 1 cut(s) 299
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
SaqAI TTAA 2 cut(s) 45, 419
SatI GCNGC 4 cut(s) 63, 333, 336, 366
Sau3AI GATC 4 cut(s) 34, 123, 175, 499
ScaI AGTACT 1 cut(s) 424
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 2 cut(s) 158, 549
SduI GDGCHC 1 cut(s) 312
SetI ASST 8 cut(s) 51, 105, 174, 211, 258, 329, 450, 553
SfcI CTRYAG 2 cut(s) 84, 336
Sse9I AATT 2 cut(s) 149, 293
SsiI CCGC 1 cut(s) 365
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 2 cut(s) 156, 547
TaiI ACGT 1 cut(s) 174
TaqI TCGA 3 cut(s) 114, 153, 174
TasI AATT 2 cut(s) 149, 293
TatI WGTACW 1 cut(s) 422
TauI GCSGC 1 cut(s) 368
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 2 cut(s) 45, 419
Tru9I TTAA 2 cut(s) 45, 419
TseI GCWGC 3 cut(s) 62, 332, 335
TspDTI ATGAA 2 cut(s) 172, 191
VneI GTGCAC 1 cut(s) 308
XceI RCATGY 2 cut(s) 359, 564
XspI CTAG 1 cut(s) 188
ZraI GACGTC 1 cut(s) 172
ZrmI AGTACT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.