Rmu_co8502817.1_g000001

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8502817.1
OG0000854
Physical Location & Seq
Forward (+)
1 .. 1137
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8502817.1_g000001.1.cds

Sequence Viewer

Length: 1137 bp
tcaagtgatacagaagcatcttcaaggtacctgcgagtagccttggggaaaaacagtgggaaagcgaaagcgcaattggaggactcttccttatttcctccccttgcacctggcagcagcagcagtcaaccgactcccaaacctgaatctgatcgtggtttgcctaacaacaataccatggcagcacatctccgcaggcaaaacaaccggaagatggctgttgagtgtcctgatattaggcctgctgttattagttctagtgaggcttggccagcagcggggcgtgtagcaccacctactagttcatctcagacgccgtggcctaaaactaatgttccagggattgtctcagcagttactaagcctgctgttagttctagtcaggcttggccagcagctgggcgtgtagctccacctactaattcatctcagatggcatggcctaaagcaaatgtgagtgcagcaccacctactagttcatctcagaagctgttttctaaaactaatagtcagaacaaggcgtggccgaaggtttcaggttgtggtcagaacaagacggcctttggtaagggagcaggacattccagctatgcaagctccactctgcaggctcaagttgagaaccgagagacatcaacagaagtgcacaagtgcgtgagtttggattccagcttggatttccctccagtttctgcagcacaagtagtgcaaaagttgccccaacaaactagtgagcctttattgaaagtgggggattttcaagctgctaataaggccttggtggaaaatattcgcgctgctgttgacttcaatgaagacaaatacactgcgtttaaggacatatctgtacagtatagtcagggattagtggacataaacgtgtattttaattttgtgaggcagtttgggttgttacatcttgtccttgacttggctagactgtgccccaatgctgagaagcagcaagagctaattgatgcctacgataacagtatgagaagcaatggtgcagaagaggatgatggatggtctcaggtcaaggtccgattgaaagatttgaagaaaggtaaagggaagagttctaacaatggctctactgcagcaccagttttgaatctcaggtcaaggtccgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

40.48

Weight (kDa)

9.43

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 39
Acc65I GGTACC 1 cut(s) 27
AccB1I GGYRCC 1 cut(s) 27
AccB7I CCANNNNNTGG 1 cut(s) 398
AccII CGCG 1 cut(s) 795
AciI CCGC 2 cut(s) 193, 278
AcoI YGGCCR 3 cut(s) 269, 389, 524
AcyI GRCGYC 1 cut(s) 314
AfaI GTAC 2 cut(s) 29, 849
AfiI CCNNNNNNNGG 4 cut(s) 214, 278, 398, 931
AflIII ACRYGT 1 cut(s) 879
AgsI TTSAA 7 cut(s) 24, 745, 761, 811, 1051, 1060, 1114
AhlI ACTAGT 3 cut(s) 299, 473, 728
AjnI CCWGG 2 cut(s) 109, 337
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 8 cut(s) 398, 410, 490, 588, 597, 672, 764, 970
AluI AGCT 8 cut(s) 398, 410, 490, 588, 597, 672, 764, 970
Alw21I GWGCWC 1 cut(s) 648
Alw26I GTCTC 3 cut(s) 352, 623, 1035
Alw44I GTGCAC 1 cut(s) 644
AlwNI CAGNNNCTG 3 cut(s) 398, 490, 692
AoxI GGCC 8 cut(s) 239, 269, 320, 389, 440, 524, 558, 774
ApaLI GTGCAC 1 cut(s) 644
Asp700I GAANNNNTTC 1 cut(s) 789
Asp718I GGTACC 1 cut(s) 27
AspLEI GCGC 2 cut(s) 73, 797
AspS9I GGNCC 2 cut(s) 1042, 1128
AvaII GGWCC 2 cut(s) 1042, 1128
BaeGI GKGCMC 2 cut(s) 648, 947
BalI TGGCCA 2 cut(s) 271, 391
BanI GGYRCC 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 822
Bbv12I GWGCWC 1 cut(s) 648
BccI CCATC 4 cut(s) 208, 427, 1016, 1020
BceAI ACGGC 2 cut(s) 301, 573
BciT130I CCWGG 2 cut(s) 111, 339
BcoDI GTCTC 3 cut(s) 352, 623, 1035
BcuI ACTAGT 3 cut(s) 299, 473, 728
BfaI CTAG 6 cut(s) 258, 300, 378, 474, 729, 936
BfmI CTRYAG 3 cut(s) 605, 693, 1098
BfuAI ACCTGC 1 cut(s) 39
Bme1390I CCNGG 2 cut(s) 111, 339
Bme18I GGWCC 2 cut(s) 1042, 1128
BmgT120I GGNCC 2 cut(s) 1042, 1128
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 2 cut(s) 111, 339
BmsI GCATC 2 cut(s) 26, 967
BpiI GAAGAC 1 cut(s) 822
BpmI CTGGAG 1 cut(s) 669
BpuEI CTTGAG 1 cut(s) 597
BsaHI GRCGYC 1 cut(s) 314
BsaI GGTCTC 1 cut(s) 1035
BsaJI CCNNGG 5 cut(s) 42, 177, 317, 338, 777
BsaWI WCCGGW 1 cut(s) 207
Bsc4I CCNNNNNNNGG 4 cut(s) 214, 278, 398, 931
Bse1I ACTGG 2 cut(s) 686, 1106
Bse3DI GCAATG 1 cut(s) 1009
BseBI CCWGG 2 cut(s) 111, 339
BseDI CCNNGG 5 cut(s) 42, 177, 317, 338, 777
BseGI GGATG 2 cut(s) 1024, 1031
BseLI CCNNNNNNNGG 4 cut(s) 214, 278, 398, 931
BseMI GCAATG 1 cut(s) 1009
BseMII CTCAG 7 cut(s) 323, 363, 443, 497, 945, 1046, 1132
BseNI ACTGG 2 cut(s) 686, 1106
BseSI GKGCMC 2 cut(s) 648, 947
BseYI CCCAGC 1 cut(s) 398
BsgI GTGCAG 2 cut(s) 480, 1029
Bsh1236I CGCG 1 cut(s) 795
BshFI GGCC 8 cut(s) 241, 271, 322, 391, 442, 526, 560, 776
BshNI GGYRCC 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 648
BsiSI CCGG 1 cut(s) 208
BslI CCNNNNNNNGG 4 cut(s) 214, 278, 398, 931
BsmAI GTCTC 3 cut(s) 352, 623, 1035
BsnI GGCC 8 cut(s) 241, 271, 322, 391, 442, 526, 560, 776
Bso31I GGTCTC 1 cut(s) 1035
Bsp1286I GDGCHC 2 cut(s) 648, 947
Bsp1407I TGTACA 1 cut(s) 847
Bsp143I GATC 1 cut(s) 151
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 2 cut(s) 193, 278
BspANI GGCC 8 cut(s) 241, 271, 322, 391, 442, 526, 560, 776
BspCNI CTCAG 7 cut(s) 322, 362, 442, 496, 946, 1045, 1131
BspFNI CGCG 1 cut(s) 795
BspLI GGNNCC 1 cut(s) 29
BspMAI CTGCAG 3 cut(s) 609, 697, 1102
BspMI ACCTGC 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 27
BspTNI GGTCTC 1 cut(s) 1035
BsrDI GCAATG 1 cut(s) 1009
BsrGI TGTACA 1 cut(s) 847
BsrI ACTGG 2 cut(s) 686, 1106
BssECI CCNNGG 5 cut(s) 42, 177, 317, 338, 777
BssMI GATC 1 cut(s) 151
BssNI GRCGYC 1 cut(s) 314
BssT1I CCWWGG 3 cut(s) 42, 177, 777
Bst2UI CCWGG 2 cut(s) 111, 339
Bst4CI ACNGT 4 cut(s) 56, 852, 942, 992
Bst6I CTCTTC 3 cut(s) 91, 1008, 1070
BstACI GRCGYC 1 cut(s) 314
BstAPI GCANNNNNTGC 1 cut(s) 715
BstAUI TGTACA 1 cut(s) 847
BstC8I GCNNGC 7 cut(s) 197, 243, 273, 366, 393, 595, 609
BstDEI CTNAG 8 cut(s) 309, 349, 360, 429, 483, 954, 1032, 1118
BstDSI CCRYGG 2 cut(s) 177, 317
BstF5I GGATG 2 cut(s) 1024, 1031
BstFNI CGCG 1 cut(s) 795
BstHHI GCGC 2 cut(s) 73, 797
BstKTI GATC 1 cut(s) 154
BstMAI GTCTC 3 cut(s) 352, 623, 1035
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 7 cut(s) 120, 272, 392, 594, 715, 773, 967
BstNI CCWGG 2 cut(s) 111, 339
BstSCI CCNGG 2 cut(s) 109, 337
BstSFI CTRYAG 3 cut(s) 605, 693, 1098
BstSLI GKGCMC 2 cut(s) 648, 947
BstUI CGCG 1 cut(s) 795
BstV2I GAAGAC 1 cut(s) 822
BsuRI GGCC 8 cut(s) 241, 271, 322, 391, 442, 526, 560, 776
BtgI CCRYGG 2 cut(s) 177, 317
BtsCI GGATG 2 cut(s) 1024, 1031
BtsI GCAGTG 1 cut(s) 825
BtsIMutI CAGTG 2 cut(s) 61, 825
BveI ACCTGC 1 cut(s) 39
Cac8I GCNNGC 7 cut(s) 197, 243, 273, 366, 393, 595, 609
CaiI CAGNNNCTG 3 cut(s) 398, 490, 692
CfoI GCGC 2 cut(s) 73, 797
Cfr13I GGNCC 2 cut(s) 1042, 1128
CseI GACGC 1 cut(s) 322
Csp6I GTAC 2 cut(s) 28, 848
CviAII CATG 2 cut(s) 178, 438
CviQI GTAC 2 cut(s) 28, 848
DdeI CTNAG 8 cut(s) 309, 349, 360, 429, 483, 954, 1032, 1118
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
EaeI YGGCCR 3 cut(s) 269, 389, 524
Eam1104I CTCTTC 3 cut(s) 91, 1008, 1070
EarI CTCTTC 3 cut(s) 91, 1008, 1070
Eco130I CCWWGG 3 cut(s) 42, 177, 777
Eco147I AGGCCT 2 cut(s) 241, 776
Eco31I GGTCTC 1 cut(s) 1035
Eco47I GGWCC 2 cut(s) 1042, 1128
EcoRII CCWGG 2 cut(s) 109, 337
EcoT14I CCWWGG 3 cut(s) 42, 177, 777
ErhI CCWWGG 3 cut(s) 42, 177, 777
FaeI CATG 2 cut(s) 181, 441
FaiI YATR 7 cut(s) 179, 439, 591, 842, 855, 875, 995
FalI AAGNNNNNCTT 2 cut(s) 545, 577
FatI CATG 2 cut(s) 177, 437
FauI CCCGC 1 cut(s) 271
FokI GGATG 2 cut(s) 1031, 1038
FspBI CTAG 6 cut(s) 258, 300, 378, 474, 729, 936
GlaI GCGC 2 cut(s) 72, 796
GsaI CCCAGC 1 cut(s) 402
GsuI CTGGAG 1 cut(s) 669
HaeIII GGCC 8 cut(s) 241, 271, 322, 391, 442, 526, 560, 776
HapII CCGG 1 cut(s) 208
HgaI GACGC 1 cut(s) 322
HhaI GCGC 2 cut(s) 73, 797
Hin1I GRCGYC 1 cut(s) 314
Hin1II CATG 2 cut(s) 181, 441
Hin6I GCGC 2 cut(s) 71, 795
HinP1I GCGC 2 cut(s) 71, 795
HincII GTYRAC 2 cut(s) 128, 805
HindII GTYRAC 2 cut(s) 128, 805
HinfI GANTC 5 cut(s) 83, 133, 146, 665, 1114
HpaII CCGG 1 cut(s) 208
Hpy166II GTNNAC 4 cut(s) 128, 646, 805, 871
Hpy188I TCNGA 8 cut(s) 151, 312, 432, 486, 513, 549, 1046, 1132
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 4 cut(s) 128, 646, 805, 871
HpyAV CCTTC 1 cut(s) 523
HpyCH4III ACNGT 4 cut(s) 56, 852, 942, 992
HpyCH4IV ACGT 1 cut(s) 879
HpyCH4V TGCA 9 cut(s) 107, 461, 593, 607, 646, 695, 709, 1010, 1100
HpyF10VI GCNNNNNNNGC 7 cut(s) 120, 272, 392, 594, 715, 773, 967
HpyF3I CTNAG 8 cut(s) 309, 349, 360, 429, 483, 954, 1032, 1118
HpySE526I ACGT 1 cut(s) 879
Hsp92I GRCGYC 1 cut(s) 314
Hsp92II CATG 2 cut(s) 181, 441
HspAI GCGC 2 cut(s) 71, 795
KpnI GGTACC 1 cut(s) 31
Kzo9I GATC 1 cut(s) 151
LmnI GCTCC 3 cut(s) 415, 572, 602
LweI GCATC 2 cut(s) 26, 967
MaeI CTAG 6 cut(s) 258, 300, 378, 474, 729, 936
MaeII ACGT 1 cut(s) 879
MaeIII GTNAC 2 cut(s) 355, 912
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 7 cut(s) 12, 78, 223, 827, 1025, 1072, 1087
MfeI CAATTG 1 cut(s) 74
MhlI GDGCHC 2 cut(s) 648, 947
MlsI TGGCCA 2 cut(s) 271, 391
MluCI AATT 4 cut(s) 74, 421, 889, 972
MluNI TGGCCA 2 cut(s) 271, 391
MlyI GAGTC 2 cut(s) 77, 127
MnlI CCTC 6 cut(s) 73, 108, 256, 693, 891, 1009
Mox20I TGGCCA 2 cut(s) 271, 391
MroXI GAANNNNTTC 1 cut(s) 789
MscI TGGCCA 2 cut(s) 271, 391
MseI TTAA 2 cut(s) 834, 888
MslI CAYNNNNRTG 1 cut(s) 878
Msp20I TGGCCA 2 cut(s) 271, 391
MspA1I CMGCKG 2 cut(s) 278, 398
MspI CCGG 1 cut(s) 208
MspR9I CCNGG 2 cut(s) 111, 339
MunI CAATTG 1 cut(s) 74
MvaI CCWGG 2 cut(s) 111, 339
MvnI CGCG 1 cut(s) 795
MwoI GCNNNNNNNGC 7 cut(s) 120, 272, 392, 594, 715, 773, 967
NcoI CCATGG 1 cut(s) 177
NdeII GATC 1 cut(s) 151
NlaIII CATG 2 cut(s) 181, 441
NlaIV GGNNCC 1 cut(s) 29
PceI AGGCCT 2 cut(s) 241, 776
PdmI GAANNNNTTC 1 cut(s) 789
PfeI GAWTC 3 cut(s) 146, 665, 1114
PflMI CCANNNNNTGG 1 cut(s) 398
PleI GAGTC 2 cut(s) 77, 127
PpsI GAGTC 2 cut(s) 77, 127
Psp6I CCWGG 2 cut(s) 109, 337
PspFI CCCAGC 1 cut(s) 398
PspGI CCWGG 2 cut(s) 109, 337
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 2 cut(s) 1042, 1128
PstI CTGCAG 3 cut(s) 609, 697, 1102
PstNI CAGNNNCTG 3 cut(s) 398, 490, 692
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 2 cut(s) 29, 849
RsaNI GTAC 2 cut(s) 28, 848
RseI CAYNNNNRTG 1 cut(s) 878
SaqAI TTAA 2 cut(s) 834, 888
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 2 cut(s) 1042, 1128
SchI GAGTC 2 cut(s) 77, 127
ScrFI CCNGG 2 cut(s) 111, 339
SduI GDGCHC 2 cut(s) 648, 947
SfaNI GCATC 2 cut(s) 26, 967
SfcI CTRYAG 3 cut(s) 605, 693, 1098
SinI GGWCC 2 cut(s) 1042, 1128
SmiMI CAYNNNNRTG 1 cut(s) 878
SmlI CTYRAG 1 cut(s) 612
SmoI CTYRAG 1 cut(s) 612
SpeI ACTAGT 3 cut(s) 299, 473, 728
Sse9I AATT 4 cut(s) 74, 421, 889, 972
SseBI AGGCCT 2 cut(s) 241, 776
SsiI CCGC 2 cut(s) 193, 278
SspI AATATT 1 cut(s) 790
SspMI CTAG 6 cut(s) 258, 300, 378, 474, 729, 936
StuI AGGCCT 2 cut(s) 241, 776
StyD4I CCNGG 2 cut(s) 109, 337
StyI CCWWGG 3 cut(s) 42, 177, 777
TaaI ACNGT 4 cut(s) 56, 852, 942, 992
TaiI ACGT 1 cut(s) 882
TasI AATT 4 cut(s) 74, 421, 889, 972
TatI WGTACW 1 cut(s) 847
TfiI GAWTC 3 cut(s) 146, 665, 1114
Tru1I TTAA 2 cut(s) 834, 888
Tru9I TTAA 2 cut(s) 834, 888
TscAI CASTG 2 cut(s) 61, 832
TspDTI ATGAA 4 cut(s) 294, 414, 468, 828
TspRI CASTG 2 cut(s) 61, 832
Van91I CCANNNNNTGG 1 cut(s) 398
VneI GTGCAC 1 cut(s) 644
VpaK11BI GGWCC 2 cut(s) 1042, 1128
XmnI GAANNNNTTC 1 cut(s) 789
XspI CTAG 6 cut(s) 258, 300, 378, 474, 729, 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.