Rorug03G0025600

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000854
Physical Location & Seq
Reverse (-)
1992787 .. 1995178
2392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0025600.1

Sequence Viewer

Length: 495 bp
ATGGCGTCGGTTCAGGTAGCGAGGGTTGCAGCCGTACCACCACCGCAGGCCCAGGCTCAGGCTCAGGCTCAGGCTCAGCCCCAGGTCCAGGTCCAGACCCAGACTCAGACCCAGACCCAGACCCAGACCCAGGCCATAGGAGAGCAGCAGAAGAAGAACAGAATTCAAGTTTCCAATACCAAGAAGCCGCTCTTCTTCTACGTCAATCTTGCTAAGAGGTATATAGAGCAGCACAATGAGGTTGAGCTCTCTGCATTGGGAATGGCAATCACTACTGTTGTCACTATTGCTGAGATTTTGAAGAACAATGGACTGGCTATTGAAAAGAAGGTGTCTACATCTACGGTTGGCATGAGGGACGACAACAAGGGTCGTCTGGTGCAGAAGGCTAAGATTGAGATTGTGCTGGAGAAGTCTGAAAAGTTTGACTCTATAATGAGTGCTGCTGCAGCTGCTCAAGCTGCTCAGGAGCCAGCTGCTGAGGGCAATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.78

Weight (kDa)

9.52

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 53 - 114 2.4e-13 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 190
AccI GTMKAC 1 cut(s) 335
AciI CCGC 2 cut(s) 44, 188
AcsI RAATTY 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 3 cut(s) 58, 88, 130
AgsI TTSAA 3 cut(s) 167, 301, 323
AjnI CCWGG 4 cut(s) 51, 81, 87, 129
AluBI AGCT 4 cut(s) 247, 452, 461, 476
AluI AGCT 4 cut(s) 247, 452, 461, 476
Alw21I GWGCWC 1 cut(s) 249
AlwNI CAGNNNCTG 1 cut(s) 479
AoxI GGCC 2 cut(s) 48, 132
ApeKI GCWGC 9 cut(s) 29, 145, 229, 443, 446, 449, 452, 461, 476
ApoI RAATTY 1 cut(s) 162
AspS9I GGNCC 3 cut(s) 49, 85, 91
AvaII GGWCC 2 cut(s) 85, 91
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvCI CCTCAGC 1 cut(s) 480
BbvI GCAGC 9 cut(s) 41, 157, 241, 430, 433, 439, 448, 461, 463
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 4 cut(s) 53, 83, 89, 131
BfmI CTRYAG 1 cut(s) 447
BlpI GCTNAGC 1 cut(s) 75
Bme1390I CCNGG 4 cut(s) 53, 83, 89, 131
Bme18I GGWCC 2 cut(s) 85, 91
BmgT120I GGNCC 3 cut(s) 49, 85, 91
BmiI GGNNCC 1 cut(s) 471
BmrFI CCNGG 4 cut(s) 53, 83, 89, 131
BpmI CTGGAG 1 cut(s) 428
Bpu10I CCTNAGC 5 cut(s) 57, 63, 69, 465, 480
Bpu1102I GCTNAGC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 441
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 51, 81, 129
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 88, 130
Bse1I ACTGG 1 cut(s) 318
BseBI CCWGG 4 cut(s) 53, 83, 89, 131
BseDI CCNNGG 3 cut(s) 51, 81, 129
BseLI CCNNNNNNNGG 3 cut(s) 58, 88, 130
BseMII CTCAG 8 cut(s) 71, 77, 83, 89, 119, 282, 471, 479
BseNI ACTGG 1 cut(s) 318
BseXI GCAGC 9 cut(s) 41, 157, 241, 430, 433, 439, 448, 461, 463
BsgI GTGCAG 1 cut(s) 401
BshFI GGCC 2 cut(s) 50, 134
BsiHKAI GWGCWC 1 cut(s) 249
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 3 cut(s) 58, 88, 130
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 2 cut(s) 50, 134
Bsp1286I GDGCHC 1 cut(s) 249
Bsp1720I GCTNAGC 1 cut(s) 75
BspACI CCGC 2 cut(s) 44, 188
BspANI GGCC 2 cut(s) 50, 134
BspCNI CTCAG 8 cut(s) 70, 76, 82, 88, 118, 283, 472, 478
BspLI GGNNCC 1 cut(s) 471
BspMAI CTGCAG 1 cut(s) 451
BspQI GCTCTTC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 190
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 3 cut(s) 51, 81, 129
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 4 cut(s) 53, 83, 89, 131
Bst4CI ACNGT 2 cut(s) 277, 346
Bst6I CTCTTC 1 cut(s) 197
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 48, 474
BstMWI GCNNNNNNNGC 5 cut(s) 26, 449, 452, 458, 461
BstNI CCWGG 4 cut(s) 53, 83, 89, 131
BstSCI CCNGG 4 cut(s) 51, 81, 87, 129
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 9 cut(s) 41, 157, 241, 430, 433, 439, 448, 461, 463
BsuRI GGCC 2 cut(s) 50, 134
Cac8I GCNNGC 2 cut(s) 48, 474
CaiI CAGNNNCTG 1 cut(s) 479
Cfr13I GGNCC 3 cut(s) 49, 85, 91
Csp6I GTAC 1 cut(s) 35
CviAII CATG 1 cut(s) 352
CviQI GTAC 1 cut(s) 35
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco47I GGWCC 2 cut(s) 85, 91
Eco53kI GAGCTC 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 247
EcoRI GAATTC 1 cut(s) 162
EcoRII CCWGG 4 cut(s) 51, 81, 87, 129
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 1 cut(s) 355
FaiI YATR 5 cut(s) 137, 222, 224, 353, 434
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FaqI GGGAC 1 cut(s) 371
FatI CATG 1 cut(s) 351
FblI GTMKAC 1 cut(s) 335
FriOI GRGCYC 1 cut(s) 249
GsuI CTGGAG 1 cut(s) 428
HaeIII GGCC 2 cut(s) 50, 134
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 355
HinfI GANTC 2 cut(s) 103, 428
Hpy166II GTNNAC 1 cut(s) 336
Hpy188I TCNGA 2 cut(s) 108, 418
Hpy188III TCNNGA 2 cut(s) 94, 467
Hpy8I GTNNAC 1 cut(s) 336
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 322, 379
HpyCH4III ACNGT 2 cut(s) 277, 346
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 4 cut(s) 29, 254, 382, 449
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 449, 452, 458, 461
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 355
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 1 cut(s) 469
Lsp1109I GCAGC 9 cut(s) 41, 157, 241, 430, 433, 439, 448, 461, 463
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 280
MbiI CCGCTC 1 cut(s) 190
MboII GAAGA 5 cut(s) 163, 166, 184, 187, 313
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 1 cut(s) 162
MlyI GAGTC 2 cut(s) 97, 422
MnlI CCTC 5 cut(s) 15, 210, 232, 348, 475
MspA1I CMGCKG 2 cut(s) 452, 476
MspR9I CCNGG 4 cut(s) 53, 83, 89, 131
MvaI CCWGG 4 cut(s) 53, 83, 89, 131
MwoI GCNNNNNNNGC 5 cut(s) 26, 449, 452, 458, 461
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 1 cut(s) 471
NmuCI GTSAC 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 197
PleI GAGTC 2 cut(s) 97, 422
PpsI GAGTC 2 cut(s) 97, 422
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 4 cut(s) 51, 81, 87, 129
PspGI CCWGG 4 cut(s) 51, 81, 87, 129
PspN4I GGNNCC 1 cut(s) 471
PspPI GGNCC 3 cut(s) 49, 85, 91
PstI CTGCAG 1 cut(s) 451
PstNI CAGNNNCTG 1 cut(s) 479
PvuII CAGCTG 2 cut(s) 452, 476
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SacI GAGCTC 1 cut(s) 249
SapI GCTCTTC 1 cut(s) 197
Sau96I GGNCC 3 cut(s) 49, 85, 91
SchI GAGTC 2 cut(s) 97, 422
ScrFI CCNGG 4 cut(s) 53, 83, 89, 131
SduI GDGCHC 1 cut(s) 249
SfcI CTRYAG 1 cut(s) 447
SinI GGWCC 2 cut(s) 85, 91
SmlI CTYRAG 1 cut(s) 456
SmoI CTYRAG 1 cut(s) 456
Sse9I AATT 1 cut(s) 162
SsiI CCGC 2 cut(s) 44, 188
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 4 cut(s) 51, 81, 87, 129
TaaI ACNGT 2 cut(s) 277, 346
TaiI ACGT 1 cut(s) 204
TasI AATT 1 cut(s) 162
TauI GCSGC 1 cut(s) 190
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 9 cut(s) 29, 145, 229, 443, 446, 449, 452, 461, 476
Tsp45I GTSAC 1 cut(s) 280
VpaK11BI GGWCC 2 cut(s) 85, 91
XapI RAATTY 1 cut(s) 162
XmiI GTMKAC 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.