Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8031236.1

Orthogroup ID

OG0000854

Physical Location & Seq

Genomic Coordinates Reverse (-)

154 .. 456

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8031236.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgattaaggacttctcggtcttgccatcccaagggagggagggtcgcttgggaccatactggtaccatgaagacacacaagcatttttcgatgatgtggatcactacaagatgatcaaggcaatgtgcaagctttcctgcagtgaatgtgacaagctggaagagcaatcaattgataactcaaggcgtcgcccgaggtttcggaacattgaacagcttaagggccatttataccaccaacataggttgtttatgtgccctctatgtttggaagcgaggaaggtagaatgcatgtatatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

100

Amino Acids

12.06

Weight (kDa)

7.64

Isoelectric Point (pI)

78.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47090 AT2G47090 AT2G47090 AT2G47090 AT2G47090 AT3G62240
fragaria_vesca	FvH4_3g07600 FvH4_6g08350 FvH4_6g08350 FvH4_6g08350 FvH4_6g08350 FvH4_7g03760 FvH4_7g03760 FvH4_7g03760
malus_domestica	MD02G1277600.v1.1 MD04G1187900.v1.1 MD07G1045700.v1.1
prunus_persica	Prupe.2G042900_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1
pyrus_communis	pycom02g23760 pycom02g23770 pycom04g16610 pycom04g16640 pycom07g03260 pycom07g03270
rosa_chinensis	RchiOBHm_Chr1g0326951 RchiOBHm_Chr3g0458251 RchiOBHm_Chr5g0011091
rosa_laevigata	RLG00000025171 RLG00000030049 RLG00000031809
rosa_multiflora	Rmu_co8031236.1_g000001 Rmu_co8098122.1_g000001 Rmu_co8217558.1_g000001 Rmu_co8502817.1_g000001 Rmu_sc0000795.1_g000001 Rmu_sc0003315.1_g000001 Rmu_sc0005999.1_g000013 Rmu_sc0007338.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065320 Rroxscaffold_4G00323480 Rroxscaffold_6G00421200
rosa_rugosa	Rorug01G0062400 Rorug01G0062500 Rorug03G0025600 Rorug03G0025700
rosa_samantha	Rh1AG079500 Rh1BG063700 Rh1CG077100 Rh1DG083600 Rh3AG086400 Rh3BG089100 Rh3CG089700 Rh3DG090200 Rh5AG087400 Rh5BG082200 Rh5CG095000 Rh5DG081800
rosa_wichuraiana	Rw0G000180 Rw0G017770 Rw1G006310 Rw3G007330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
Acc65I	GGTACC	1 cut(s)	63
AccB1I	GGYRCC	1 cut(s)	63
AclWI	GGATC	1 cut(s)	108
AcyI	GRCGYC	1 cut(s)	187
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	3 cut(s)	32, 36, 37
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	212
AluBI	AGCT	3 cut(s)	133, 157, 217
AluI	AGCT	3 cut(s)	133, 157, 217
AlwI	GGATC	1 cut(s)	108
Ama87I	CYCGRG	1 cut(s)	193
AoxI	GGCC	1 cut(s)	223
Asp718I	GGTACC	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	53, 223
AvaI	CYCGRG	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	78
BccI	CCATC	1 cut(s)	34
BclI	TGATCA	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	139
BfrI	CTTAAG	1 cut(s)	218
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	53, 223
BmiI	GGNNCC	2 cut(s)	54, 65
BpiI	GAAGAC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	166
BsaBI	GATNNNNATC	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	31, 194
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 36, 37
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	129
Bse8I	GATNNNNATC	1 cut(s)	99
BseDI	CCNNGG	2 cut(s)	31, 194
BseGI	GGATG	1 cut(s)	26
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	3 cut(s)	32, 36, 37
BseMI	GCAATG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	260
BshFI	GGCC	1 cut(s)	225
BshNI	GGYRCC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	3 cut(s)	32, 36, 37
BsmFI	GGGAC	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	225
BsoBI	CYCGRG	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	100, 114
BspANI	GGCC	1 cut(s)	225
BspLI	GGNNCC	2 cut(s)	54, 65
BspMAI	CTGCAG	1 cut(s)	143
BspPI	GGATC	1 cut(s)	108
BspQI	GCTCTTC	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	63
BspTI	CTTAAG	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	31, 194
BssMI	GATC	2 cut(s)	100, 114
BssNI	GRCGYC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	187
BstAFI	CTTAAG	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	26
BstKTI	GATC	2 cut(s)	103, 117
BstMBI	GATC	2 cut(s)	100, 114
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	139
BstSLI	GKGCMC	1 cut(s)	260
BstV2I	GAAGAC	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	26
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	53, 223
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	2 cut(s)	68, 292
CviJI	RGCY	4 cut(s)	133, 157, 217, 225
CviKI_1	RGCY	4 cut(s)	133, 157, 217, 225
CviQI	GTAC	1 cut(s)	64
DpnI	GATC	2 cut(s)	102, 116
DpnII	GATC	2 cut(s)	100, 114
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	53
Eco88I	CYCGRG	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	2 cut(s)	71, 295
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	2 cut(s)	67, 291
FbaI	TGATCA	1 cut(s)	114
FokI	GGATG	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	225
HgaI	GACGC	1 cut(s)	176
Hin1I	GRCGYC	1 cut(s)	187
Hin1II	CATG	2 cut(s)	71, 295
HindIII	AAGCTT	1 cut(s)	131
Hpy188I	TCNGA	1 cut(s)	204
Hpy99I	CGWCG	1 cut(s)	192
HpyAV	CCTTC	1 cut(s)	274
HpyCH4V	TGCA	3 cut(s)	129, 141, 291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
Hsp92I	GRCGYC	1 cut(s)	187
Hsp92II	CATG	2 cut(s)	71, 295
KpnI	GGTACC	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	100, 114
LguI	GCTCTTC	1 cut(s)	156
LpnPI	CCDG	3 cut(s)	46, 143, 151
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	2 cut(s)	102, 116
MboI	GATC	2 cut(s)	100, 114
MboII	GAAGA	2 cut(s)	83, 173
MfeI	CAATTG	1 cut(s)	171
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	1 cut(s)	171
MnlI	CCTC	5 cut(s)	30, 34, 189, 270, 270
Mph1103I	ATGCAT	1 cut(s)	293
MseI	TTAA	2 cut(s)	6, 219
MspCI	CTTAAG	1 cut(s)	218
MunI	CAATTG	1 cut(s)	171
Mva1269I	GAATGC	1 cut(s)	293
MwoI	GCNNNNNNNGC	1 cut(s)	163
NdeII	GATC	2 cut(s)	100, 114
NlaIII	CATG	2 cut(s)	71, 295
NlaIV	GGNNCC	2 cut(s)	54, 65
NmuCI	GTSAC	1 cut(s)	149
NsiI	ATGCAT	1 cut(s)	293
NspI	RCATGY	1 cut(s)	295
PciSI	GCTCTTC	1 cut(s)	156
PctI	GAATGC	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	54, 65
PspPI	GGNCC	2 cut(s)	53, 223
PstI	CTGCAG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	6, 219
Sau3AI	GATC	2 cut(s)	100, 114
Sau96I	GGNCC	2 cut(s)	53, 223
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	6 cut(s)	135, 159, 200, 219, 248, 285
SfcI	CTRYAG	1 cut(s)	139
SinI	GGWCC	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	181, 218
SmoI	CTYRAG	2 cut(s)	181, 218
Sse9I	AATT	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	31
TaqI	TCGA	1 cut(s)	90
TaqII	GACCGA	1 cut(s)	7
TasI	AATT	1 cut(s)	171
Tru1I	TTAA	2 cut(s)	6, 219
Tru9I	TTAA	2 cut(s)	6, 219
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	148
Vha464I	CTTAAG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	53
XceI	RCATGY	1 cut(s)	295
Zsp2I	ATGCAT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.