pycom02g23770

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000854
Physical Location & Seq
Forward (+)
21899354 .. 21900772
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g23770.1

Sequence Viewer

Length: 1368 bp
ATGGCAGCTGGCAACAGTTCAGACCCCAAACAAGACTCAGATAGTCTGCCTAGCAACACAATGGCTGCGCATCTCCGCCGGCAAAACAACCACAAGGTGGCTGTTAATAGCTCTGGAATGGCTTGGCCAGCAGCAACACGTGGGCCTGTGGCTGTTAATAGTTCTGGACAGGCTTGGCCAGCAGCAACTCGGGGGCCTGTAGTACAACCTACTAATTCAGCTCAGGCTTCACCCGCGACAAGTGTTTCATCTCGTGTTTCTGGTCAGAGCAATATGGCCTCTGGTAATGGACCCAGACCATCTAGTTATGCCAGTTCCACTCAGGCTCAAGTTGAGACTAGACAGAATGCCTTTGGTAATGGATCGAGACCATCTAGTTATGCAAGTTCTGCAGCTCATGTTGAACAGACAACAATACCTGGATTGTTATCATCAGGTTCTTCAAGGGATTCAAGCAACACCAAATCTGGTAGGATCAGCCACTCTACGTCAGCTCCTAATTTGGTCGAAAATGGATCTGTTCAACCCTCCAATTCTGATTTTCCGCCTGTTTCTGCAGTACAAGTGCGTAAGTTGCCTTCAACTACCCATCCTATATTGAAAGTGGAGGATGTTCAAACTGCTAACAAGTCCTTAGTGGAAAAGATTCGTGCCGGTCTTGAATTTGACGAAGAAAAATACACTATTTTTAAAGACATATCTGGACAGTATCGCCAGGGTTTGGTTGACACAGGAATATATTTAGATTTTGTGCGGCAGTTTGGCTTGCTTCATCTTGTCCTTGATTTGGCTAGACTCTGCCCTGATTCTCAGAAGCAGAAGGAGCTTATCGATGCCTACAATACTGGTACCCGCAACGGATGGTCTCAGGACAGTCCTAAATTGAAAGATGGTAATAATTCTAAGAAAGGTAAAGGGAAGATTTCAGAGTCTGAAAACAGTAATTCTAAGAACACGATAGCAGATAGCATTATTAGCTCTGTACGGGAACTTCAATCAAACAACAGGCCTACGGAAGAAGTGGTGGAGGTGTTGACAAAGGATGGGTACCGTGCTGCCAAAGGAAAATCAAATCTGTTAGTGAATGGGCACCAGGAGGAGTTGAATTCTCGCAGTCAACCTCTAATGCAACCAAGGGGCCAAAAGGATTCCACGCCAGCTGCTAGGCCAAATTTAGTGGATGGTGGTGGAGGGAGCAAGCAGCGGAAGAAAACCTCCAAATTTGATAGAGTCCGCTTGGGTGATGCTGCAGCACTTTTAGATAGCAGAAATTCTGATTCTCAAGCAGATGCCGGTGATGAAGGATTAGATGGAGGATTGCCTGTCAAAGGTGTTTGGCGAAAAGGAACTCAAAAACTCTTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

456

Amino Acids

48.42

Weight (kDa)

9.59

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAH_ZNF598 PF23202 206 - 281 6.2e-21 ZNF598 PAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 69
Acc65I GGTACC 2 cut(s) 848, 1047
AccB1I GGYRCC 3 cut(s) 848, 1047, 1089
AccB7I CCANNNNNTGG 2 cut(s) 97, 721
AccII CGCG 1 cut(s) 236
AciI CCGC 7 cut(s) 76, 234, 545, 754, 853, 1204, 1234
AclWI GGATC 3 cut(s) 370, 482, 523
AcoI YGGCCR 2 cut(s) 125, 176
AcsI RAATTY 5 cut(s) 662, 1105, 1171, 1220, 1270
AcvI CACGTG 1 cut(s) 140
AdeI CACNNNGTG 1 cut(s) 97
AfaI GTAC 5 cut(s) 204, 561, 850, 984, 1049
AfiI CCNNNNNNNGG 4 cut(s) 97, 721, 787, 1328
AflIII ACRYGT 1 cut(s) 137
AjnI CCWGG 3 cut(s) 418, 714, 1092
AluBI AGCT 8 cut(s) 8, 111, 221, 395, 494, 826, 978, 1160
AluI AGCT 8 cut(s) 8, 111, 221, 395, 494, 826, 978, 1160
Alw26I GTCTC 3 cut(s) 329, 361, 870
AlwI GGATC 3 cut(s) 370, 482, 523
AlwNI CAGNNNCTG 1 cut(s) 932
Ama87I CYCGRG 1 cut(s) 189
AoxI GGCC 8 cut(s) 125, 143, 176, 194, 276, 1007, 1138, 1166
ApoI RAATTY 5 cut(s) 662, 1105, 1171, 1220, 1270
Asp700I GAANNNNTTC 1 cut(s) 645
Asp718I GGTACC 2 cut(s) 848, 1047
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 4 cut(s) 143, 194, 290, 1138
AsuHPI GGTGA 3 cut(s) 222, 1253, 1307
AvaI CYCGRG 1 cut(s) 189
AvaII GGWCC 1 cut(s) 290
BaeGI GKGCMC 1 cut(s) 1092
BalI TGGCCA 2 cut(s) 127, 178
BanI GGYRCC 3 cut(s) 848, 1047, 1089
BarI GAAGNNNNNNTAC 4 cut(s) 562, 594, 975, 1007
BauI CACGAG 1 cut(s) 252
BbrPI CACGTG 1 cut(s) 140
BccI CCATC 8 cut(s) 307, 379, 597, 855, 884, 1037, 1175, 1304
BciT130I CCWGG 3 cut(s) 420, 716, 1094
BcoDI GTCTC 3 cut(s) 329, 361, 870
BfaI CTAG 6 cut(s) 51, 303, 339, 375, 792, 1164
BfmI CTRYAG 4 cut(s) 198, 390, 555, 1248
Bme1390I CCNGG 3 cut(s) 420, 716, 1094
Bme18I GGWCC 1 cut(s) 290
BmeT110I CYCGRG 1 cut(s) 189
BmgT120I GGNCC 4 cut(s) 143, 194, 290, 1138
BmiI GGNNCC 6 cut(s) 195, 292, 850, 1049, 1091, 1139
BmrFI CCNGG 3 cut(s) 420, 716, 1094
BmsI GCATC 4 cut(s) 79, 823, 1234, 1279
Bpu10I CCTNAGC 1 cut(s) 222
BpuEI CTTGAG 2 cut(s) 312, 1266
Bsa29I ATCGAT 1 cut(s) 831
BsaAI YACGTR 1 cut(s) 140
BsaBI GATNNNNATC 1 cut(s) 427
BsaI GGTCTC 2 cut(s) 361, 870
BsaJI CCNNGG 2 cut(s) 715, 1133
BsaXI ACNNNNNCTCC 2 cut(s) 478, 508
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 721, 787, 1328
Bse118I RCCGGY 3 cut(s) 78, 653, 1292
Bse1I ACTGG 2 cut(s) 312, 850
Bse8I GATNNNNATC 1 cut(s) 427
BseBI CCWGG 3 cut(s) 420, 716, 1094
BseCI ATCGAT 1 cut(s) 831
BseDI CCNNGG 2 cut(s) 715, 1133
BseGI GGATG 5 cut(s) 589, 616, 866, 1048, 1186
BseJI GATNNNNATC 1 cut(s) 427
BseLI CCNNNNNNNGG 4 cut(s) 97, 721, 787, 1328
BseMII CTCAG 5 cut(s) 51, 236, 335, 824, 881
BseNI ACTGG 2 cut(s) 312, 850
BseRI GAGGAG 1 cut(s) 1112
BseSI GKGCMC 1 cut(s) 1092
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 8 cut(s) 127, 145, 178, 196, 278, 1009, 1140, 1168
BshNI GGYRCC 3 cut(s) 848, 1047, 1089
BshVI ATCGAT 1 cut(s) 831
BsiHKCI CYCGRG 1 cut(s) 189
BsiSI CCGG 3 cut(s) 79, 654, 1293
BslI CCNNNNNNNGG 4 cut(s) 97, 721, 787, 1328
BsmAI GTCTC 3 cut(s) 329, 361, 870
BsmI GAATGC 1 cut(s) 352
BsnI GGCC 8 cut(s) 127, 145, 178, 196, 278, 1009, 1140, 1168
Bso31I GGTCTC 2 cut(s) 361, 870
BsoBI CYCGRG 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 1092
Bsp143I GATC 3 cut(s) 362, 474, 515
BspACI CCGC 7 cut(s) 76, 234, 545, 754, 853, 1204, 1234
BspANI GGCC 8 cut(s) 127, 145, 178, 196, 278, 1009, 1140, 1168
BspCNI CTCAG 5 cut(s) 50, 235, 334, 823, 880
BspDI ATCGAT 1 cut(s) 831
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 6 cut(s) 195, 292, 850, 1049, 1091, 1139
BspMAI CTGCAG 3 cut(s) 394, 559, 1252
BspPI GGATC 3 cut(s) 370, 482, 523
BspT107I GGYRCC 3 cut(s) 848, 1047, 1089
BspTNI GGTCTC 2 cut(s) 361, 870
BsrFI RCCGGY 3 cut(s) 78, 653, 1292
BsrI ACTGG 2 cut(s) 312, 850
BssAI RCCGGY 3 cut(s) 78, 653, 1292
BssECI CCNNGG 2 cut(s) 715, 1133
BssMI GATC 3 cut(s) 362, 474, 515
BssSI CACGAG 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 1133
Bst2BI CACGAG 1 cut(s) 252
Bst2UI CCWGG 3 cut(s) 420, 716, 1094
Bst4CI ACNGT 5 cut(s) 17, 708, 875, 941, 1052
BstAPI GCANNNNNTGC 1 cut(s) 389
BstBAI YACGTR 1 cut(s) 140
BstC8I GCNNGC 7 cut(s) 10, 80, 129, 180, 767, 1158, 1199
BstDEI CTNAG 8 cut(s) 37, 222, 321, 634, 810, 867, 903, 948
BstENI CCTNNNNNAGG 1 cut(s) 1326
BstF5I GGATG 5 cut(s) 589, 616, 866, 1048, 1186
BstFNI CGCG 1 cut(s) 236
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 3 cut(s) 365, 477, 518
BstMAI GTCTC 3 cut(s) 329, 361, 870
BstMBI GATC 3 cut(s) 362, 474, 515
BstMWI GCNNNNNNNGC 7 cut(s) 128, 179, 233, 389, 574, 823, 975
BstNI CCWGG 3 cut(s) 420, 716, 1094
BstSCI CCNGG 3 cut(s) 418, 714, 1092
BstSFI CTRYAG 4 cut(s) 198, 390, 555, 1248
BstSLI GKGCMC 1 cut(s) 1092
BstUI CGCG 1 cut(s) 236
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
Bsu15I ATCGAT 1 cut(s) 831
BsuRI GGCC 8 cut(s) 127, 145, 178, 196, 278, 1009, 1140, 1168
BsuTUI ATCGAT 1 cut(s) 831
BtsCI GGATG 5 cut(s) 589, 616, 866, 1048, 1186
Cac8I GCNNGC 7 cut(s) 10, 80, 129, 180, 767, 1158, 1199
CaiI CAGNNNCTG 1 cut(s) 932
CfoI GCGC 1 cut(s) 70
Cfr10I RCCGGY 3 cut(s) 78, 653, 1292
Cfr13I GGNCC 4 cut(s) 143, 194, 290, 1138
ClaI ATCGAT 1 cut(s) 831
Csp6I GTAC 5 cut(s) 203, 560, 849, 983, 1048
CspCI CAANNNNNGTGG 2 cut(s) 1158, 1193
CviAII CATG 1 cut(s) 398
CviQI GTAC 5 cut(s) 203, 560, 849, 983, 1048
DdeI CTNAG 8 cut(s) 37, 222, 321, 634, 810, 867, 903, 948
DpnI GATC 3 cut(s) 364, 476, 517
DpnII GATC 3 cut(s) 362, 474, 515
DraI TTTAAA 1 cut(s) 691
DraIII CACNNNGTG 1 cut(s) 97
EaeI YGGCCR 2 cut(s) 125, 176
EciI GGCGGA 2 cut(s) 65, 534
Eco130I CCWWGG 1 cut(s) 1133
Eco147I AGGCCT 1 cut(s) 1009
Eco31I GGTCTC 2 cut(s) 361, 870
Eco47I GGWCC 1 cut(s) 290
Eco72I CACGTG 1 cut(s) 140
Eco88I CYCGRG 1 cut(s) 189
EcoNI CCTNNNNNAGG 1 cut(s) 1326
EcoO109I RGGNCCY 1 cut(s) 194
EcoRI GAATTC 1 cut(s) 1105
EcoRII CCWGG 3 cut(s) 418, 714, 1092
EcoT14I CCWWGG 1 cut(s) 1133
ErhI CCWWGG 1 cut(s) 1133
FaeI CATG 1 cut(s) 401
FaiI YATR 7 cut(s) 275, 309, 381, 399, 596, 698, 739
FatI CATG 1 cut(s) 397
FauI CCCGC 2 cut(s) 241, 860
FokI GGATG 5 cut(s) 576, 623, 873, 1055, 1193
FspBI CTAG 6 cut(s) 51, 303, 339, 375, 792, 1164
FspI TGCGCA 1 cut(s) 69
GlaI GCGC 1 cut(s) 69
HaeIII GGCC 8 cut(s) 127, 145, 178, 196, 278, 1009, 1140, 1168
HapII CCGG 3 cut(s) 79, 654, 1293
HhaI GCGC 1 cut(s) 70
Hin1II CATG 1 cut(s) 401
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 3 cut(s) 727, 1035, 1118
HindII GTYRAC 3 cut(s) 727, 1035, 1118
HinfI GANTC 9 cut(s) 35, 449, 646, 795, 806, 929, 1148, 1230, 1277
HpaII CCGG 3 cut(s) 79, 654, 1293
HphI GGTGA 3 cut(s) 222, 1253, 1307
Hpy166II GTNNAC 3 cut(s) 727, 1035, 1118
Hpy188I TCNGA 8 cut(s) 22, 40, 267, 538, 813, 928, 934, 1276
Hpy188III TCNNGA 6 cut(s) 114, 165, 366, 659, 702, 869
Hpy8I GTNNAC 3 cut(s) 727, 1035, 1118
HpyAV CCTTC 3 cut(s) 588, 814, 1295
HpyCH4III ACNGT 5 cut(s) 17, 708, 875, 941, 1052
HpyCH4IV ACGT 2 cut(s) 139, 488
HpyCH4V TGCA 5 cut(s) 383, 392, 557, 1129, 1250
HpyF10VI GCNNNNNNNGC 7 cut(s) 128, 179, 233, 389, 574, 823, 975
HpyF3I CTNAG 8 cut(s) 37, 222, 321, 634, 810, 867, 903, 948
HpySE526I ACGT 2 cut(s) 139, 488
Hsp92II CATG 1 cut(s) 401
HspAI GCGC 1 cut(s) 68
KpnI GGTACC 2 cut(s) 852, 1051
KroI GCCGGC 1 cut(s) 78
KroNI GCCGGC 1 cut(s) 80
Kzo9I GATC 3 cut(s) 362, 474, 515
LmnI GCTCC 3 cut(s) 499, 823, 1194
LweI GCATC 4 cut(s) 79, 823, 1234, 1279
MaeI CTAG 6 cut(s) 51, 303, 339, 375, 792, 1164
MaeII ACGT 2 cut(s) 139, 488
MalI GATC 3 cut(s) 364, 476, 517
MboI GATC 3 cut(s) 362, 474, 515
MboII GAAGA 5 cut(s) 432, 683, 931, 1028, 1219
MflI RGATCY 1 cut(s) 515
MhlI GDGCHC 1 cut(s) 1092
MlsI TGGCCA 2 cut(s) 127, 178
MluNI TGGCCA 2 cut(s) 127, 178
MlyI GAGTC 4 cut(s) 29, 789, 938, 1239
MnlI CCTC 9 cut(s) 289, 538, 601, 1021, 1090, 1131, 1184, 1225, 1307
Mox20I TGGCCA 2 cut(s) 127, 178
MroNI GCCGGC 1 cut(s) 78
MroXI GAANNNNTTC 1 cut(s) 645
MscI TGGCCA 2 cut(s) 127, 178
MseI TTAA 3 cut(s) 105, 156, 690
Msp20I TGGCCA 2 cut(s) 127, 178
MspA1I CMGCKG 3 cut(s) 8, 1160, 1204
MspI CCGG 3 cut(s) 79, 654, 1293
MspR9I CCNGG 3 cut(s) 420, 716, 1094
Mva1269I GAATGC 1 cut(s) 352
MvaI CCWGG 3 cut(s) 420, 716, 1094
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 7 cut(s) 128, 179, 233, 389, 574, 823, 975
NaeI GCCGGC 1 cut(s) 80
NdeII GATC 3 cut(s) 362, 474, 515
NgoMIV GCCGGC 1 cut(s) 78
NlaIII CATG 1 cut(s) 401
NlaIV GGNNCC 6 cut(s) 195, 292, 850, 1049, 1091, 1139
NsbI TGCGCA 1 cut(s) 69
PceI AGGCCT 1 cut(s) 1009
PctI GAATGC 1 cut(s) 352
PdiI GCCGGC 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 645
PfeI GAWTC 5 cut(s) 449, 646, 806, 1148, 1277
PflMI CCANNNNNTGG 2 cut(s) 97, 721
PleI GAGTC 4 cut(s) 29, 789, 937, 1238
PmaCI CACGTG 1 cut(s) 140
PmlI CACGTG 1 cut(s) 140
PpsI GAGTC 4 cut(s) 29, 789, 937, 1238
Ppu21I YACGTR 1 cut(s) 140
Psp6I CCWGG 3 cut(s) 418, 714, 1092
PspCI CACGTG 1 cut(s) 140
PspGI CCWGG 3 cut(s) 418, 714, 1092
PspN4I GGNNCC 6 cut(s) 195, 292, 850, 1049, 1091, 1139
PspPI GGNCC 4 cut(s) 143, 194, 290, 1138
PstI CTGCAG 3 cut(s) 394, 559, 1252
PstNI CAGNNNCTG 1 cut(s) 932
PsuI RGATCY 1 cut(s) 515
PvuII CAGCTG 2 cut(s) 8, 1160
RsaI GTAC 5 cut(s) 204, 561, 850, 984, 1049
RsaNI GTAC 5 cut(s) 203, 560, 849, 983, 1048
SaqAI TTAA 3 cut(s) 105, 156, 690
Sau3AI GATC 3 cut(s) 362, 474, 515
Sau96I GGNCC 4 cut(s) 143, 194, 290, 1138
SchI GAGTC 4 cut(s) 29, 789, 938, 1239
ScrFI CCNGG 3 cut(s) 420, 716, 1094
SduI GDGCHC 1 cut(s) 1092
SfaNI GCATC 4 cut(s) 79, 823, 1234, 1279
SfcI CTRYAG 4 cut(s) 198, 390, 555, 1248
SinI GGWCC 1 cut(s) 290
SmlI CTYRAG 2 cut(s) 327, 1281
SmoI CTYRAG 2 cut(s) 327, 1281
SseBI AGGCCT 1 cut(s) 1009
SsiI CCGC 7 cut(s) 76, 234, 545, 754, 853, 1204, 1234
SspMI CTAG 6 cut(s) 51, 303, 339, 375, 792, 1164
StuI AGGCCT 1 cut(s) 1009
StyD4I CCNGG 3 cut(s) 418, 714, 1092
StyI CCWWGG 1 cut(s) 1133
TaaI ACNGT 5 cut(s) 17, 708, 875, 941, 1052
TaiI ACGT 2 cut(s) 142, 491
TaqI TCGA 3 cut(s) 365, 507, 831
TatI WGTACW 2 cut(s) 202, 559
TauI GCSGC 1 cut(s) 757
TfiI GAWTC 5 cut(s) 449, 646, 806, 1148, 1277
Tru1I TTAA 3 cut(s) 105, 156, 690
Tru9I TTAA 3 cut(s) 105, 156, 690
TspDTI ATGAA 3 cut(s) 237, 761, 1314
TspGWI ACGGA 2 cut(s) 873, 1028
Van91I CCANNNNNTGG 2 cut(s) 97, 721
VpaK11BI GGWCC 1 cut(s) 290
XagI CCTNNNNNAGG 1 cut(s) 1326
XapI RAATTY 5 cut(s) 662, 1105, 1171, 1220, 1270
XmnI GAANNNNTTC 1 cut(s) 645
XspI CTAG 6 cut(s) 51, 303, 339, 375, 792, 1164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.