E3 ubiquitin-protein ligase hel2-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 785, 1578 |
| AccB1I | GGYRCC | 1 cut(s) | 1365 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 623, 2261 |
| AccII | CGCG | 1 cut(s) | 26 |
| AciI | CCGC | 3 cut(s) | 26, 1467, 1572 |
| AclWI | GGATC | 3 cut(s) | 61, 240, 253 |
| AcoI | YGGCCR | 1 cut(s) | 1280 |
| AcsI | RAATTY | 5 cut(s) | 1036, 1192, 1566, 2062, 2179 |
| AcuI | CTGAAG | 1 cut(s) | 710 |
| AcyI | GRCGYC | 1 cut(s) | 931 |
| AdeI | CACNNNGTG | 1 cut(s) | 2261 |
| AfaI | GTAC | 6 cut(s) | 225, 1329, 1387, 1426, 1650, 2166 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 233, 623, 1300, 2261 |
| AflIII | ACRYGT | 2 cut(s) | 1018, 2135 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1146, 1227 |
| AjiI | CACGTC | 2 cut(s) | 1043, 2138 |
| AjnI | CCWGG | 1 cut(s) | 694 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2204, 2236 |
| AluBI | AGCT | 6 cut(s) | 517, 637, 815, 820, 1277, 1910 |
| AluI | AGCT | 6 cut(s) | 517, 637, 815, 820, 1277, 1910 |
| Alw21I | GWGCWC | 1 cut(s) | 663 |
| Alw26I | GTCTC | 3 cut(s) | 864, 870, 1809 |
| AlwI | GGATC | 3 cut(s) | 61, 240, 253 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2195 |
| AoxI | GGCC | 5 cut(s) | 1090, 1171, 1280, 1297, 1719 |
| ApeKI | GCWGC | 2 cut(s) | 1540, 2159 |
| ApoI | RAATTY | 5 cut(s) | 1036, 1192, 1566, 2062, 2179 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 135, 167 |
| AspLEI | GCGC | 4 cut(s) | 17, 26, 1540, 1633 |
| AspS9I | GGNCC | 2 cut(s) | 1298, 1840 |
| AsuC2I | CCSGG | 3 cut(s) | 1301, 1838, 2244 |
| AsuHPI | GGTGA | 5 cut(s) | 188, 551, 638, 2071, 2102 |
| AvaII | GGWCC | 1 cut(s) | 1840 |
| BalI | TGGCCA | 1 cut(s) | 1282 |
| BamHI | GGATCC | 1 cut(s) | 245 |
| BanI | GGYRCC | 1 cut(s) | 1365 |
| BbsI | GAAGAC | 4 cut(s) | 89, 774, 934, 1494 |
| Bbv12I | GWGCWC | 1 cut(s) | 663 |
| BbvI | GCAGC | 2 cut(s) | 1552, 2146 |
| BccI | CCATC | 3 cut(s) | 226, 548, 1766 |
| BceAI | ACGGC | 2 cut(s) | 2, 906 |
| BciT130I | CCWGG | 1 cut(s) | 696 |
| BcnI | CCSGG | 3 cut(s) | 1301, 1838, 2244 |
| BcoDI | GTCTC | 3 cut(s) | 864, 870, 1809 |
| BfaI | CTAG | 7 cut(s) | 654, 1362, 1389, 1827, 2141, 2168, 2299 |
| BfmI | CTRYAG | 3 cut(s) | 884, 1404, 2160 |
| BfuAI | ACCTGC | 2 cut(s) | 785, 1578 |
| BglII | AGATCT | 1 cut(s) | 2170 |
| BisI | GCNGC | 2 cut(s) | 1541, 2160 |
| BlpI | GCTNAGC | 1 cut(s) | 816 |
| BlsI | GCNGC | 2 cut(s) | 1542, 2161 |
| BmcAI | AGTACT | 2 cut(s) | 1387, 2166 |
| Bme1390I | CCNGG | 4 cut(s) | 696, 1301, 1838, 2244 |
| Bme18I | GGWCC | 1 cut(s) | 1840 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1146, 1227 |
| BmgBI | CACGTC | 2 cut(s) | 1043, 2138 |
| BmgT120I | GGNCC | 2 cut(s) | 1298, 1840 |
| BmiI | GGNNCC | 5 cut(s) | 247, 1367, 1756, 1842, 2231 |
| BmrFI | CCNGG | 4 cut(s) | 696, 1301, 1838, 2244 |
| BmsI | GCATC | 7 cut(s) | 113, 887, 989, 1408, 1430, 1753, 2005 |
| BpiI | GAAGAC | 4 cut(s) | 89, 774, 934, 1494 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 62, 94 |
| BpmI | CTGGAG | 1 cut(s) | 2097 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 816 |
| BpuEI | CTTGAG | 3 cut(s) | 752, 960, 1257 |
| BpuMI | CCSGG | 3 cut(s) | 1301, 1838, 2244 |
| Bsa29I | ATCGAT | 1 cut(s) | 1761 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1005, 1444 |
| BsaHI | GRCGYC | 1 cut(s) | 931 |
| BsaI | GGTCTC | 1 cut(s) | 870 |
| BsaJI | CCNNGG | 7 cut(s) | 844, 922, 1087, 1168, 1294, 1693, 1938 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2204, 2234 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 233, 623, 1300, 2261 |
| Bse1I | ACTGG | 4 cut(s) | 589, 897, 1539, 1602 |
| Bse3DI | GCAATG | 1 cut(s) | 321 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1005, 1444 |
| BseBI | CCWGG | 1 cut(s) | 696 |
| BseCI | ATCGAT | 1 cut(s) | 1761 |
| BseDI | CCNNGG | 7 cut(s) | 844, 922, 1087, 1168, 1294, 1693, 1938 |
| BseGI | GGATG | 5 cut(s) | 10, 589, 1445, 1595, 2020 |
| BseJI | GATNNNNATC | 2 cut(s) | 1005, 1444 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 233, 623, 1300, 2261 |
| BseMI | GCAATG | 1 cut(s) | 321 |
| BseMII | CTCAG | 6 cut(s) | 807, 1128, 1451, 1859, 2006, 2143 |
| BseNI | ACTGG | 4 cut(s) | 589, 897, 1539, 1602 |
| BseRI | GAGGAG | 2 cut(s) | 588, 1551 |
| BseXI | GCAGC | 2 cut(s) | 1552, 2146 |
| BsgI | GTGCAG | 2 cut(s) | 340, 472 |
| Bsh1236I | CGCG | 1 cut(s) | 26 |
| BshFI | GGCC | 5 cut(s) | 1092, 1173, 1282, 1299, 1721 |
| BshNI | GGYRCC | 1 cut(s) | 1365 |
| BshVI | ATCGAT | 1 cut(s) | 1761 |
| BsiHKAI | GWGCWC | 1 cut(s) | 663 |
| BsiSI | CCGG | 3 cut(s) | 1301, 1838, 2244 |
| BslFI | GGGAC | 2 cut(s) | 525, 1038 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 233, 623, 1300, 2261 |
| BsmAI | GTCTC | 3 cut(s) | 864, 870, 1809 |
| BsmFI | GGGAC | 2 cut(s) | 525, 1038 |
| BsmI | GAATGC | 1 cut(s) | 149 |
| BsnI | GGCC | 5 cut(s) | 1092, 1173, 1282, 1299, 1721 |
| Bso31I | GGTCTC | 1 cut(s) | 870 |
| Bsp1286I | GDGCHC | 1 cut(s) | 663 |
| Bsp1407I | TGTACA | 1 cut(s) | 1648 |
| Bsp143I | GATC | 8 cut(s) | 53, 115, 245, 418, 727, 935, 1529, 2170 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 816 |
| Bsp19I | CCATGG | 1 cut(s) | 844 |
| BspACI | CCGC | 3 cut(s) | 26, 1467, 1572 |
| BspANI | GGCC | 5 cut(s) | 1092, 1173, 1282, 1299, 1721 |
| BspCNI | CTCAG | 6 cut(s) | 808, 1127, 1452, 1858, 2005, 2142 |
| BspDI | ATCGAT | 1 cut(s) | 1761 |
| BspFNI | CGCG | 1 cut(s) | 26 |
| BspHI | TCATGA | 1 cut(s) | 259 |
| BspLI | GGNNCC | 5 cut(s) | 247, 1367, 1756, 1842, 2231 |
| BspMAI | CTGCAG | 2 cut(s) | 1408, 2164 |
| BspMI | ACCTGC | 2 cut(s) | 785, 1578 |
| BspPI | GGATC | 3 cut(s) | 61, 240, 253 |
| BspT107I | GGYRCC | 1 cut(s) | 1365 |
| BspTNI | GGTCTC | 1 cut(s) | 870 |
| BsrDI | GCAATG | 1 cut(s) | 321 |
| BsrGI | TGTACA | 1 cut(s) | 1648 |
| BsrI | ACTGG | 4 cut(s) | 589, 897, 1539, 1602 |
| BssECI | CCNNGG | 7 cut(s) | 844, 922, 1087, 1168, 1294, 1693, 1938 |
| BssMI | GATC | 8 cut(s) | 53, 115, 245, 418, 727, 935, 1529, 2170 |
| BssNI | GRCGYC | 1 cut(s) | 931 |
| BssT1I | CCWWGG | 5 cut(s) | 844, 1087, 1168, 1693, 1938 |
| Bst2UI | CCWGG | 1 cut(s) | 696 |
| Bst4CI | ACNGT | 5 cut(s) | 917, 1432, 1653, 1963, 2024 |
| Bst6I | CTCTTC | 4 cut(s) | 948, 1701, 2267, 2297 |
| BstACI | GRCGYC | 1 cut(s) | 931 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 442, 986 |
| BstAUI | TGTACA | 1 cut(s) | 1648 |
| BstC8I | GCNNGC | 6 cut(s) | 323, 1080, 1284, 1690, 1882, 2102 |
| BstDSI | CCRYGG | 2 cut(s) | 844, 922 |
| BstF5I | GGATG | 5 cut(s) | 10, 589, 1445, 1595, 2020 |
| BstFNI | CGCG | 1 cut(s) | 26 |
| BstHHI | GCGC | 4 cut(s) | 17, 26, 1540, 1633 |
| BstKTI | GATC | 8 cut(s) | 56, 118, 248, 421, 730, 938, 1532, 2173 |
| BstMAI | GTCTC | 3 cut(s) | 864, 870, 1809 |
| BstMBI | GATC | 8 cut(s) | 53, 115, 245, 418, 727, 935, 1529, 2170 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 21, 23, 84, 132, 442, 826, 986, 1283 |
| BstNI | CCWGG | 1 cut(s) | 696 |
| BstNSI | RCATGY | 2 cut(s) | 1022, 1688 |
| BstSCI | CCNGG | 4 cut(s) | 694, 1299, 1836, 2242 |
| BstSFI | CTRYAG | 3 cut(s) | 884, 1404, 2160 |
| BstUI | CGCG | 1 cut(s) | 26 |
| BstV1I | GCAGC | 2 cut(s) | 1552, 2146 |
| BstV2I | GAAGAC | 4 cut(s) | 89, 774, 934, 1494 |
| BstX2I | RGATCY | 3 cut(s) | 53, 245, 2170 |
| BstYI | RGATCY | 3 cut(s) | 53, 245, 2170 |
| Bsu15I | ATCGAT | 1 cut(s) | 1761 |
| BsuRI | GGCC | 5 cut(s) | 1092, 1173, 1282, 1299, 1721 |
| BsuTUI | ATCGAT | 1 cut(s) | 1761 |
| BtgI | CCRYGG | 2 cut(s) | 844, 922 |
| BtrI | CACGTC | 2 cut(s) | 1043, 2138 |
| BtsCI | GGATG | 5 cut(s) | 10, 589, 1445, 1595, 2020 |
| BtsI | GCAGTG | 1 cut(s) | 1936 |
| BtsIMutI | CAGTG | 5 cut(s) | 582, 1532, 1609, 1936, 1968 |
| BveI | ACCTGC | 2 cut(s) | 785, 1578 |
| Cac8I | GCNNGC | 6 cut(s) | 323, 1080, 1284, 1690, 1882, 2102 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2195 |
| CciI | TCATGA | 1 cut(s) | 259 |
| CfoI | GCGC | 4 cut(s) | 17, 26, 1540, 1633 |
| Cfr13I | GGNCC | 2 cut(s) | 1298, 1840 |
| ClaI | ATCGAT | 1 cut(s) | 1761 |
| CseI | GACGC | 2 cut(s) | 939, 1035 |
| Csp6I | GTAC | 6 cut(s) | 224, 1328, 1386, 1425, 1649, 2165 |
| CviAII | CATG | 7 cut(s) | 260, 845, 1019, 1370, 1685, 1717, 1751 |
| CviQI | GTAC | 6 cut(s) | 224, 1328, 1386, 1425, 1649, 2165 |
| DpnI | GATC | 8 cut(s) | 55, 117, 247, 420, 729, 937, 1531, 2172 |
| DpnII | GATC | 8 cut(s) | 53, 115, 245, 418, 727, 935, 1529, 2170 |
| DraI | TTTAAA | 1 cut(s) | 426 |
| DraIII | CACNNNGTG | 1 cut(s) | 2261 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1146, 1227 |
| EaeI | YGGCCR | 1 cut(s) | 1280 |
| Eam1104I | CTCTTC | 4 cut(s) | 948, 1701, 2267, 2297 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1146, 1227 |
| EarI | CTCTTC | 4 cut(s) | 948, 1701, 2267, 2297 |
| EciI | GGCGGA | 1 cut(s) | 1456 |
| Eco130I | CCWWGG | 5 cut(s) | 844, 1087, 1168, 1693, 1938 |
| Eco31I | GGTCTC | 1 cut(s) | 870 |
| Eco47I | GGWCC | 1 cut(s) | 1840 |
| Eco57I | CTGAAG | 1 cut(s) | 710 |
| EcoRI | GAATTC | 3 cut(s) | 1192, 2062, 2179 |
| EcoRII | CCWGG | 1 cut(s) | 694 |
| EcoT14I | CCWWGG | 5 cut(s) | 844, 1087, 1168, 1693, 1938 |
| EcoT22I | ATGCAT | 2 cut(s) | 880, 2020 |
| ErhI | CCWWGG | 5 cut(s) | 844, 1087, 1168, 1693, 1938 |
| FaeI | CATG | 7 cut(s) | 263, 848, 1022, 1373, 1688, 1720, 1754 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1243, 1275 |
| FaqI | GGGAC | 2 cut(s) | 525, 1038 |
| FatI | CATG | 7 cut(s) | 259, 844, 1018, 1369, 1684, 1716, 1750 |
| FauNDI | CATATG | 2 cut(s) | 447, 648 |
| Fnu4HI | GCNGC | 2 cut(s) | 1541, 2160 |
| FokI | GGATG | 5 cut(s) | 17, 576, 1452, 1582, 2027 |
| Fsp4HI | GCNGC | 2 cut(s) | 1541, 2160 |
| FspBI | CTAG | 7 cut(s) | 654, 1362, 1389, 1827, 2141, 2168, 2299 |
| GlaI | GCGC | 4 cut(s) | 16, 25, 1539, 1632 |
| GluI | GCNGC | 2 cut(s) | 1541, 2160 |
| GsuI | CTGGAG | 1 cut(s) | 2097 |
| HaeIII | GGCC | 5 cut(s) | 1092, 1173, 1282, 1299, 1721 |
| HapII | CCGG | 3 cut(s) | 1301, 1838, 2244 |
| HgaI | GACGC | 2 cut(s) | 939, 1035 |
| HhaI | GCGC | 4 cut(s) | 17, 26, 1540, 1633 |
| Hin1I | GRCGYC | 1 cut(s) | 931 |
| Hin1II | CATG | 7 cut(s) | 263, 848, 1022, 1373, 1688, 1720, 1754 |
| Hin6I | GCGC | 4 cut(s) | 15, 24, 1538, 1631 |
| HinP1I | GCGC | 4 cut(s) | 15, 24, 1538, 1631 |
| HindIII | AAGCTT | 1 cut(s) | 1275 |
| HinfI | GANTC | 8 cut(s) | 31, 358, 542, 971, 1052, 1556, 1830, 1934 |
| HpaII | CCGG | 3 cut(s) | 1301, 1838, 2244 |
| HphI | GGTGA | 5 cut(s) | 188, 551, 638, 2071, 2102 |
| Hpy166II | GTNNAC | 3 cut(s) | 277, 491, 504 |
| Hpy8I | GTNNAC | 3 cut(s) | 277, 491, 504 |
| Hpy99I | CGWCG | 4 cut(s) | 123, 155, 1001, 2056 |
| HpyAV | CCTTC | 6 cut(s) | 227, 259, 1554, 1732, 1849, 1909 |
| HpyCH4III | ACNGT | 5 cut(s) | 917, 1432, 1653, 1963, 2024 |
| HpyCH4IV | ACGT | 3 cut(s) | 1042, 2054, 2137 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 21, 23, 84, 132, 442, 826, 986, 1283 |
| HpySE526I | ACGT | 3 cut(s) | 1042, 2054, 2137 |
| Hsp92I | GRCGYC | 1 cut(s) | 931 |
| Hsp92II | CATG | 7 cut(s) | 263, 848, 1022, 1373, 1688, 1720, 1754 |
| HspAI | GCGC | 4 cut(s) | 15, 24, 1538, 1631 |
| Kzo9I | GATC | 8 cut(s) | 53, 115, 245, 418, 727, 935, 1529, 2170 |
| LmnI | GCTCC | 1 cut(s) | 2229 |
| Lsp1109I | GCAGC | 2 cut(s) | 1552, 2146 |
| LweI | GCATC | 7 cut(s) | 113, 887, 989, 1408, 1430, 1753, 2005 |
| MaeI | CTAG | 7 cut(s) | 654, 1362, 1389, 1827, 2141, 2168, 2299 |
| MaeII | ACGT | 3 cut(s) | 1042, 2054, 2137 |
| MalI | GATC | 8 cut(s) | 55, 117, 247, 420, 729, 937, 1531, 2172 |
| MboI | GATC | 8 cut(s) | 53, 115, 245, 418, 727, 935, 1529, 2170 |
| MflI | RGATCY | 3 cut(s) | 53, 245, 2170 |
| MhlI | GDGCHC | 1 cut(s) | 663 |
| MlsI | TGGCCA | 1 cut(s) | 1282 |
| MluCI | AATT | 9 cut(s) | 334, 440, 1036, 1192, 1314, 1566, 1976, 2062, 2179 |
| MluNI | TGGCCA | 1 cut(s) | 1282 |
| MlyI | GAGTC | 4 cut(s) | 352, 536, 1824, 1928 |
| Mox20I | TGGCCA | 1 cut(s) | 1282 |
| Mph1103I | ATGCAT | 2 cut(s) | 880, 2020 |
| MscI | TGGCCA | 1 cut(s) | 1282 |
| MseI | TTAA | 4 cut(s) | 309, 396, 425, 993 |
| MslI | CAYNNNNRTG | 1 cut(s) | 647 |
| Msp20I | TGGCCA | 1 cut(s) | 1282 |
| MspA1I | CMGCKG | 2 cut(s) | 517, 1574 |
| MspI | CCGG | 3 cut(s) | 1301, 1838, 2244 |
| MspR9I | CCNGG | 4 cut(s) | 696, 1301, 1838, 2244 |
| Mva1269I | GAATGC | 1 cut(s) | 149 |
| MvaI | CCWGG | 1 cut(s) | 696 |
| MvnI | CGCG | 1 cut(s) | 26 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 21, 23, 84, 132, 442, 826, 986, 1283 |
| NciI | CCSGG | 3 cut(s) | 1301, 1838, 2244 |
| NcoI | CCATGG | 1 cut(s) | 844 |
| NdeI | CATATG | 2 cut(s) | 447, 648 |
| NdeII | GATC | 8 cut(s) | 53, 115, 245, 418, 727, 935, 1529, 2170 |
| NlaIII | CATG | 7 cut(s) | 263, 848, 1022, 1373, 1688, 1720, 1754 |
| NlaIV | GGNNCC | 5 cut(s) | 247, 1367, 1756, 1842, 2231 |
| NmuCI | GTSAC | 7 cut(s) | 62, 160, 539, 749, 1931, 2047, 2090 |
| NsiI | ATGCAT | 2 cut(s) | 880, 2020 |
| NspI | RCATGY | 2 cut(s) | 1022, 1688 |
| PagI | TCATGA | 1 cut(s) | 259 |
| PciI | ACATGT | 1 cut(s) | 1018 |
| PctI | GAATGC | 1 cut(s) | 149 |
| PfeI | GAWTC | 4 cut(s) | 31, 971, 1052, 1556 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 623, 2261 |
| PkrI | GCNGC | 2 cut(s) | 1542, 2161 |
| PleI | GAGTC | 4 cut(s) | 352, 536, 1824, 1928 |
| PpsI | GAGTC | 4 cut(s) | 352, 536, 1824, 1928 |
| PscI | ACATGT | 1 cut(s) | 1018 |
| Psp6I | CCWGG | 1 cut(s) | 694 |
| PspGI | CCWGG | 1 cut(s) | 694 |
| PspN4I | GGNNCC | 5 cut(s) | 247, 1367, 1756, 1842, 2231 |
| PspPI | GGNCC | 2 cut(s) | 1298, 1840 |
| PstI | CTGCAG | 2 cut(s) | 1408, 2164 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2195 |
| PsuI | RGATCY | 3 cut(s) | 53, 245, 2170 |
| PvuII | CAGCTG | 1 cut(s) | 517 |
| RsaI | GTAC | 6 cut(s) | 225, 1329, 1387, 1426, 1650, 2166 |
| RsaNI | GTAC | 6 cut(s) | 224, 1328, 1386, 1425, 1649, 2165 |
| RseI | CAYNNNNRTG | 1 cut(s) | 647 |
| SaqAI | TTAA | 4 cut(s) | 309, 396, 425, 993 |
| SatI | GCNGC | 2 cut(s) | 1541, 2160 |
| Sau3AI | GATC | 8 cut(s) | 53, 115, 245, 418, 727, 935, 1529, 2170 |
| Sau96I | GGNCC | 2 cut(s) | 1298, 1840 |
| ScaI | AGTACT | 2 cut(s) | 1387, 2166 |
| SchI | GAGTC | 4 cut(s) | 352, 536, 1824, 1928 |
| ScrFI | CCNGG | 4 cut(s) | 696, 1301, 1838, 2244 |
| SduI | GDGCHC | 1 cut(s) | 663 |
| SfaNI | GCATC | 7 cut(s) | 113, 887, 989, 1408, 1430, 1753, 2005 |
| SfcI | CTRYAG | 3 cut(s) | 884, 1404, 2160 |
| SinI | GGWCC | 1 cut(s) | 1840 |
| SmiI | ATTTAAAT | 1 cut(s) | 426 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 647 |
| SmlI | CTYRAG | 3 cut(s) | 731, 975, 1272 |
| SmoI | CTYRAG | 3 cut(s) | 731, 975, 1272 |
| Sse9I | AATT | 9 cut(s) | 334, 440, 1036, 1192, 1314, 1566, 1976, 2062, 2179 |
| SsiI | CCGC | 3 cut(s) | 26, 1467, 1572 |
| SspI | AATATT | 1 cut(s) | 710 |
| SspMI | CTAG | 7 cut(s) | 654, 1362, 1389, 1827, 2141, 2168, 2299 |
| StyD4I | CCNGG | 4 cut(s) | 694, 1299, 1836, 2242 |
| StyI | CCWWGG | 5 cut(s) | 844, 1087, 1168, 1693, 1938 |
| SwaI | ATTTAAAT | 1 cut(s) | 426 |
| TaaI | ACNGT | 5 cut(s) | 917, 1432, 1653, 1963, 2024 |
| TaiI | ACGT | 3 cut(s) | 1045, 2057, 2140 |
| TaqI | TCGA | 7 cut(s) | 36, 121, 206, 238, 361, 810, 1761 |
| TaqII | GACCGA | 1 cut(s) | 852 |
| TasI | AATT | 9 cut(s) | 334, 440, 1036, 1192, 1314, 1566, 1976, 2062, 2179 |
| TatI | WGTACW | 3 cut(s) | 1385, 1648, 2164 |
| TfiI | GAWTC | 4 cut(s) | 31, 971, 1052, 1556 |
| Tru1I | TTAA | 4 cut(s) | 309, 396, 425, 993 |
| Tru9I | TTAA | 4 cut(s) | 309, 396, 425, 993 |
| TscAI | CASTG | 5 cut(s) | 589, 1539, 1609, 1936, 1968 |
| TseFI | GTSAC | 7 cut(s) | 62, 160, 539, 749, 1931, 2047, 2090 |
| TseI | GCWGC | 2 cut(s) | 1540, 2159 |
| Tsp45I | GTSAC | 7 cut(s) | 62, 160, 539, 749, 1931, 2047, 2090 |
| TspDTI | ATGAA | 9 cut(s) | 94, 276, 472, 720, 728, 784, 1705, 1719, 2058 |
| TspGWI | ACGGA | 1 cut(s) | 66 |
| TspRI | CASTG | 5 cut(s) | 589, 1539, 1609, 1936, 1968 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 623, 2261 |
| VpaK11BI | GGWCC | 1 cut(s) | 1840 |
| XapI | RAATTY | 5 cut(s) | 1036, 1192, 1566, 2062, 2179 |
| XbaI | TCTAGA | 1 cut(s) | 653 |
| XceI | RCATGY | 2 cut(s) | 1022, 1688 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1100, 1181, 1774 |
| XspI | CTAG | 7 cut(s) | 654, 1362, 1389, 1827, 2141, 2168, 2299 |
| ZrmI | AGTACT | 2 cut(s) | 1387, 2166 |
| Zsp2I | ATGCAT | 2 cut(s) | 880, 2020 |