Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000854

Physical Location & Seq

Genomic Coordinates Reverse (-)

27831775 .. 27836206

Gene Structure 4432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1187900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2478 bp

ATGTATGATCTGGAAAAGAGAAGAGATACCATGGATGATAGCTGCGCTGTTTGTGCGGAGCCACTTCAATGGGTAGCTTATGGGCCCTGTGGCCATCGCGAGGTCTGCTCCACCTGCACTATTCGGCTCCGTTTCATATGTGAAGATTCCCGTTGCTGCATCTGCAAGAGTGAATCTAAGATCATCTTTGTCACGAAGGCTTTAGGCGACTATACAACGATGATTAATGACTTTTCAGTTTTCCCAGCCGATCCAGTGGAGGGTCAAGTTGGAAAGTACTGGTATCATGAAGGAACACAAGCATTTTTTGATGATCTTGATCACTACAAGATGATAAAGGCCATGTGCAAGCTATCTTGTGGCGTTTGTGATAAGATAAATGAACAAAAGAGTGAAGGGTCAAAGAGACAGCGGGAGTTTAAAAATGTCGAGCAGCTGAAAAATCATTTGTTCCATTGTCATGGATTGTTCATGTGCAGTCTGTGTTTGGGCGGTAGGAAGATCTTTATCTGTGAGCAAAAGTTATATACTAAAGCTCAATTGGGTCGGCATACAGAGACAGGTGATTTAGAGGTAGACGGCAATGAGACTGAAAGATGTGGATTTAATGGACATCCTATGTGTGAGTTTTGCAGCAATCCGTTTTATGGAGATAATGAGCTGTACATGCATATGTCCACTGAGCACTATACTTGCCATATATGCCAAAGGCAACATCCAGGACAATATGAATACTACAATATCTATGATGACTTGGAGAGTCATTTTTCTCAAGCTCATTTCTTATGCAAAGATGACGACTGCTTAACAAAGAAGTTTGTTGTTTTTGCAACTGAATCTGAACTAAAGAGGCATAATGCCAAGGAACACGGAGGGAACATGTCTCGTTCTAAGCGTAATATTGCTCTTAAGATACCAGTGAGCTTCCAGTGTAGGAGAAGTAATGAGGCAGATCTTCATGGACCTTATGTTAGAGGACGTGGTTTTCATTTTAATTCTGCAGACAATCAACTTTCCGTGGCACTTCAAGCTAGCCATGATACAGCCACTGCAGAAAGGTGCCGTAATGCATCCTCTAGTACACAACAAGCTTCTATTCACCGAGAAACAAGCGAACTTGAAACTGTTGCTGGCCGTTTTGAGGCGTTAGCTACTGCTGAATTTGAGTCTTCTTCAAGAGAAAATCCCCGGATTGAACTACAAGAAGCATCATCCTTCCCTCCACTTCCAGTGGCTCAAAGATACAGGCAACAGAAATTAAGAAACGGTTCAGCAGGATTGGGTGGTAGTTCAATGGCTTCTCGTATTCGTCGCCTTAACAAAGTAACTGTCCTTAATACTTCTCCAGTTTGGCCTGCAACAAATCGTCAACCTAAATCATCTGCCAGTAGTTCTCACCAGAAAAAGCCCTCTTCAGGCTCTGGGCACATATCATCATCTAGTTCTCCTGTATTTTCCCCGAGCGGTCCCGTTAACCAAGCTGCAGCCACTGGGTTTGTTTCATCTAATTTTACTAGTCCACAGAATTCGACTGGAACCAGTAAGGTCACCCAATCTGCTTCAGGTCCAAAAATTATCAATACTGGTTCTTTGGACTCCGATTTTCCTTCTGTTTCTGCTAATCAAACAAATAAAGAACCTGCTACTGCAAGTATTCAGAGAGTGCCAAAGGTTGGAGATGTTCATGTTGTCAACAAGTCTGTTGTGGAAAAAATCCGTGATGCTTTGGAACGTGATGACAACAAATTCTCCGCATTTAAAGAAATATCTTCTGACTACCGCAAGGACATAATCAATACAGAGGAATACCTTGCTTATGTCTACCAGTTCGGCCTGTCACATTTGCTTCTCGAGCTAGCTAGACTCTGTCCTGATGCTGAGAAACAAAGAGAGCTTGTCGAGACTTACAATTTTAATATGAGGAGCAGCGGTACTCATGAAAACAGTTTGTGCAATGGCAGTAGCAAGTCAAGGAGCAGAAGCTCCAAGAAGGGCAAGGAAAAGTGTGAAGATAATGGAATTAAGAGTTCGAAATATGCTCTGCTAGATTTTCCTGTCATCCCTGTGAGGAATTTGCAGTCGAACCATAAACCTCCAGCGGAAGATGCAGCGGTCTCATTGAAGGACATCGTTCAGTCAGCCAAAGGAAAGTCGAAGATTTCAGTTGATGATGAACTTCCAGAGAATCAAAGGCCGACGGGTCAAAAAGGTTCTCGGTCATCTGATACCAGCTCAAATAACAATTTGGGGACCGCAGGAGCTGGTACTAAGCAAGGGAAAAAGACTCCAAAGTTTCTCAGAAACCGCCTTGGCAACGATGCTACAAAACTCTCTGAACATGGTGATTGTCCTGAGCCGATTCAAGAAAAAAAGGACGGAAACAAGGATCCACCAGAAGGATTGCCAGTACGTGGAGTTTGGCAAAATGGAGGTGGTCGTAAGCTCGTGAAGATGACCACGAGGGATAGCAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

826

Amino Acids

91.76

Weight (kDa)

8.63

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RING_ZNF598	PF25447	12 - 74	1.8e-07	ZNF598 RING finger domain
zf-C2H2_13	PF23230	229 - 285	1.2e-14	C2H2-type zinc finger
PAH_ZNF598	PF23202	565 - 637	1.8e-21	ZNF598 PAH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47090 AT2G47090 AT2G47090 AT2G47090 AT2G47090 AT3G62240
fragaria_vesca	FvH4_3g07600 FvH4_6g08350 FvH4_6g08350 FvH4_6g08350 FvH4_6g08350 FvH4_7g03760 FvH4_7g03760 FvH4_7g03760
malus_domestica	MD02G1277600.v1.1 MD04G1187900.v1.1 MD07G1045700.v1.1
prunus_persica	Prupe.2G042900_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1
pyrus_communis	pycom02g23760 pycom02g23770 pycom04g16610 pycom04g16640 pycom07g03260 pycom07g03270
rosa_chinensis	RchiOBHm_Chr1g0326951 RchiOBHm_Chr3g0458251 RchiOBHm_Chr5g0011091
rosa_laevigata	RLG00000025171 RLG00000030049 RLG00000031809
rosa_multiflora	Rmu_co8031236.1_g000001 Rmu_co8098122.1_g000001 Rmu_co8217558.1_g000001 Rmu_co8502817.1_g000001 Rmu_sc0000795.1_g000001 Rmu_sc0003315.1_g000001 Rmu_sc0005999.1_g000013 Rmu_sc0007338.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065320 Rroxscaffold_4G00323480 Rroxscaffold_6G00421200
rosa_rugosa	Rorug01G0062400 Rorug01G0062500 Rorug03G0025600 Rorug03G0025700
rosa_samantha	Rh1AG079500 Rh1BG063700 Rh1CG077100 Rh1DG083600 Rh3AG086400 Rh3BG089100 Rh3CG089700 Rh3DG090200 Rh5AG087400 Rh5BG082200 Rh5CG095000 Rh5DG081800
rosa_wichuraiana	Rw0G000180 Rw0G017770 Rw1G006310 Rw3G007330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	122
Acc36I	ACCTGC	2 cut(s)	122, 1648
AccB1I	GGYRCC	1 cut(s)	1059
AccB7I	CCANNNNNTGG	2 cut(s)	1673, 2411
AccBSI	CCGCTC	1 cut(s)	1464
AccI	GTMKAC	2 cut(s)	576, 1821
AccII	CGCG	1 cut(s)	99
AclWI	GGATC	3 cut(s)	245, 2381, 2394
AcoI	YGGCCR	2 cut(s)	91, 1132
AcsI	RAATTY	4 cut(s)	1160, 1525, 1745, 2071
AcuI	CTGAAG	2 cut(s)	1398, 1545
AfaI	GTAC	6 cut(s)	278, 665, 1081, 1933, 2266, 2409
AfiI	CCNNNNNNNGG	8 cut(s)	100, 260, 647, 1141, 1415, 1673, 2396, 2411
AflII	CTTAAG	1 cut(s)	908
AflIII	ACRYGT	1 cut(s)	879
AgsI	TTSAA	8 cut(s)	68, 1028, 1121, 1176, 1196, 1293, 2122, 2363
AhlI	ACTAGT	1 cut(s)	1514
AjiI	CACGTC	1 cut(s)	980
AjnI	CCWGG	1 cut(s)	718
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	6 cut(s)	400, 551, 581, 888, 1895, 2119
AlwI	GGATC	3 cut(s)	245, 2381, 2394
AlwNI	CAGNNNCTG	4 cut(s)	1049, 1421, 1490, 2261
Ama87I	CYCGRG	2 cut(s)	1459, 1850
AoxI	GGCC	7 cut(s)	83, 91, 339, 1132, 1352, 1831, 2192
ApaI	GGGCCC	1 cut(s)	87
ApeKI	GCWGC	8 cut(s)	42, 156, 433, 633, 1481, 1484, 1926, 2108
ApoI	RAATTY	4 cut(s)	1160, 1525, 1745, 2071
ArsI	GACNNNNNNTTYG	2 cut(s)	1314, 1346
AseI	ATTAAT	1 cut(s)	225
Asp700I	GAANNNNTTC	1 cut(s)	1267
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	6 cut(s)	83, 84, 962, 1466, 1565, 2250
AsuC2I	CCSGG	1 cut(s)	1189
AsuHPI	GGTGA	5 cut(s)	575, 1091, 1388, 1540, 2354
AsuII	TTCGAA	1 cut(s)	2030
AsuNHI	GCTAGC	2 cut(s)	1031, 1855
AvaI	CYCGRG	2 cut(s)	1459, 1850
AvaII	GGWCC	4 cut(s)	962, 1466, 1565, 2250
BaeGI	GKGCMC	2 cut(s)	87, 1428
BalI	TGGCCA	1 cut(s)	93
BamHI	GGATCC	1 cut(s)	2386
BanI	GGYRCC	1 cut(s)	1059
BanII	GRGCYC	1 cut(s)	87
BauI	CACGAG	2 cut(s)	2444, 2458
BbsI	GAAGAC	1 cut(s)	1161
Bbv12I	GWGCWC	1 cut(s)	687
BbvI	GCAGC	8 cut(s)	29, 143, 445, 645, 1468, 1496, 1938, 2120
BccI	CCATC	1 cut(s)	102
BceAI	ACGGC	3 cut(s)	595, 1047, 1119
BciT130I	CCWGG	1 cut(s)	720
BclI	TGATCA	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	1189
BcoDI	GTCTC	6 cut(s)	400, 551, 581, 888, 1895, 2119
BcuI	ACTAGT	1 cut(s)	1514
BfaI	CTAG	7 cut(s)	1032, 1077, 1440, 1515, 1856, 1860, 2045
BfmI	CTRYAG	3 cut(s)	999, 1050, 1482
BfrI	CTTAAG	1 cut(s)	908
BfuAI	ACCTGC	2 cut(s)	122, 1648
BglII	AGATCT	2 cut(s)	501, 952
BisI	GCNGC	8 cut(s)	43, 157, 434, 634, 1482, 1485, 1927, 2109
BlsI	GCNGC	8 cut(s)	44, 158, 435, 635, 1483, 1486, 1928, 2110
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	2 cut(s)	720, 1189
Bme18I	GGWCC	4 cut(s)	962, 1466, 1565, 2250
BmeT110I	CYCGRG	2 cut(s)	1459, 1850
BmgBI	CACGTC	1 cut(s)	980
BmgT120I	GGNCC	6 cut(s)	83, 84, 962, 1466, 1565, 2250
BmiI	GGNNCC	8 cut(s)	60, 85, 128, 1061, 1468, 1537, 2251, 2388
BmrFI	CCNGG	2 cut(s)	720, 1189
BmrI	ACTGGG	1 cut(s)	1500
BmsI	GCATC	7 cut(s)	168, 1079, 1217, 1711, 1864, 2095, 2308
BmtI	GCTAGC	2 cut(s)	1035, 1859
BmuI	ACTGGG	1 cut(s)	1500
BpiI	GAAGAC	1 cut(s)	1161
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
BpmI	CTGGAG	2 cut(s)	1329, 2079
Bpu10I	CCTNAGC	1 cut(s)	2352
Bpu14I	TTCGAA	1 cut(s)	2030
BpuEI	CTTGAG	1 cut(s)	756
BpuMI	CCSGG	1 cut(s)	1189
BsaAI	YACGTR	1 cut(s)	2411
BsaBI	GATNNNNATC	2 cut(s)	318, 506
BsaI	GGTCTC	1 cut(s)	2119
BsaJI	CCNNGG	5 cut(s)	30, 861, 1017, 1187, 2308
BsaXI	ACNNNNNCTCC	4 cut(s)	1733, 1763, 1915, 1945
Bsc4I	CCNNNNNNNGG	8 cut(s)	100, 260, 647, 1141, 1415, 1673, 2396, 2411
Bse3DI	GCAATG	2 cut(s)	589, 1960
Bse8I	GATNNNNATC	2 cut(s)	318, 506
BseBI	CCWGG	1 cut(s)	720
BseDI	CCNNGG	5 cut(s)	30, 861, 1017, 1187, 2308
BseGI	GGATG	6 cut(s)	40, 613, 715, 1070, 1211, 2058
BseJI	GATNNNNATC	2 cut(s)	318, 506
BseLI	CCNNNNNNNGG	8 cut(s)	100, 260, 647, 1141, 1415, 1673, 2396, 2411
BseMI	GCAATG	2 cut(s)	589, 1960
BseMII	CTCAG	4 cut(s)	672, 1869, 2311, 2343
BseRI	GAGGAG	1 cut(s)	1936
BseSI	GKGCMC	2 cut(s)	87, 1428
BseXI	GCAGC	8 cut(s)	29, 143, 445, 645, 1468, 1496, 1938, 2120
BseYI	CCCAGC	1 cut(s)	244
BsgI	GTGCAG	2 cut(s)	100, 496
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	7 cut(s)	85, 93, 341, 1134, 1354, 1833, 2194
BshNI	GGYRCC	1 cut(s)	1059
BsiHKAI	GWGCWC	1 cut(s)	687
BsiHKCI	CYCGRG	2 cut(s)	1459, 1850
BsiSI	CCGG	1 cut(s)	1189
BslFI	GGGAC	2 cut(s)	1452, 2263
BslI	CCNNNNNNNGG	8 cut(s)	100, 260, 647, 1141, 1415, 1673, 2396, 2411
BsmAI	GTCTC	6 cut(s)	400, 551, 581, 888, 1895, 2119
BsmFI	GGGAC	2 cut(s)	1452, 2263
BsnI	GGCC	7 cut(s)	85, 93, 341, 1134, 1354, 1833, 2194
Bso31I	GGTCTC	1 cut(s)	2119
BsoBI	CYCGRG	2 cut(s)	1459, 1850
Bsp119I	TTCGAA	1 cut(s)	2030
Bsp120I	GGGCCC	1 cut(s)	83
Bsp1286I	GDGCHC	3 cut(s)	87, 687, 1428
Bsp1407I	TGTACA	1 cut(s)	663
Bsp143I	GATC	8 cut(s)	7, 180, 250, 313, 319, 501, 952, 2386
Bsp19I	CCATGG	1 cut(s)	30
Bsp68I	TCGCGA	1 cut(s)	99
BspANI	GGCC	7 cut(s)	85, 93, 341, 1134, 1354, 1833, 2194
BspCNI	CTCAG	4 cut(s)	673, 1870, 2310, 2344
BspFNI	CGCG	1 cut(s)	99
BspHI	TCATGA	2 cut(s)	286, 1936
BspLI	GGNNCC	8 cut(s)	60, 85, 128, 1061, 1468, 1537, 2251, 2388
BspMAI	CTGCAG	3 cut(s)	1003, 1054, 1486
BspMI	ACCTGC	2 cut(s)	122, 1648
BspOI	GCTAGC	2 cut(s)	1035, 1859
BspPI	GGATC	3 cut(s)	245, 2381, 2394
BspT104I	TTCGAA	1 cut(s)	2030
BspT107I	GGYRCC	1 cut(s)	1059
BspTI	CTTAAG	1 cut(s)	908
BspTNI	GGTCTC	1 cut(s)	2119
BsrBI	CCGCTC	1 cut(s)	1464
BsrDI	GCAATG	2 cut(s)	589, 1960
BsrGI	TGTACA	1 cut(s)	663
BssECI	CCNNGG	5 cut(s)	30, 861, 1017, 1187, 2308
BssMI	GATC	8 cut(s)	7, 180, 250, 313, 319, 501, 952, 2386
BssSI	CACGAG	2 cut(s)	2444, 2458
BssT1I	CCWWGG	3 cut(s)	30, 861, 2308
Bst2BI	CACGAG	2 cut(s)	2444, 2458
Bst2UI	CCWGG	1 cut(s)	720
Bst4CI	ACNGT	4 cut(s)	1126, 1268, 1330, 1946
Bst6I	CTCTTC	2 cut(s)	16, 1417
BstAFI	CTTAAG	1 cut(s)	908
BstAUI	TGTACA	1 cut(s)	663
BstBAI	YACGTR	1 cut(s)	2411
BstBI	TTCGAA	1 cut(s)	2030
BstC8I	GCNNGC	5 cut(s)	350, 1033, 1132, 1356, 1857
BstDEI	CTNAG	7 cut(s)	177, 681, 891, 1878, 2268, 2297, 2352
BstDSI	CCRYGG	2 cut(s)	30, 1017
BstEII	GGTNACC	1 cut(s)	1546
BstF5I	GGATG	6 cut(s)	40, 613, 715, 1070, 1211, 2058
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	8 cut(s)	10, 183, 253, 316, 322, 504, 955, 2389
BstMAI	GTCTC	6 cut(s)	400, 551, 581, 888, 1895, 2119
BstMBI	GATC	8 cut(s)	7, 180, 250, 313, 319, 501, 952, 2386
BstMWI	GCNNNNNNNGC	9 cut(s)	53, 105, 114, 162, 667, 702, 1028, 1852, 2105
BstNI	CCWGG	1 cut(s)	720
BstNSI	RCATGY	2 cut(s)	670, 883
BstPI	GGTNACC	1 cut(s)	1546
BstSCI	CCNGG	2 cut(s)	718, 1187
BstSFI	CTRYAG	3 cut(s)	999, 1050, 1482
BstSLI	GKGCMC	2 cut(s)	87, 1428
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	8 cut(s)	29, 143, 445, 645, 1468, 1496, 1938, 2120
BstV2I	GAAGAC	1 cut(s)	1161
BstX2I	RGATCY	3 cut(s)	501, 952, 2386
BstXI	CCANNNNNNTGG	2 cut(s)	69, 461
BstYI	RGATCY	3 cut(s)	501, 952, 2386
BsuRI	GGCC	7 cut(s)	85, 93, 341, 1134, 1354, 1833, 2194
BtgI	CCRYGG	2 cut(s)	30, 1017
BtgZI	GCGATG	1 cut(s)	80
BtrI	CACGTC	1 cut(s)	980
BtsCI	GGATG	6 cut(s)	40, 613, 715, 1070, 1211, 2058
BtsI	GCAGTG	1 cut(s)	1047
BtsIMutI	CAGTG	7 cut(s)	261, 678, 924, 935, 1047, 1236, 1488
BtuMI	TCGCGA	1 cut(s)	99
BveI	ACCTGC	2 cut(s)	122, 1648
Cac8I	GCNNGC	5 cut(s)	350, 1033, 1132, 1356, 1857
CaiI	CAGNNNCTG	4 cut(s)	1049, 1421, 1490, 2261
CciI	TCATGA	2 cut(s)	286, 1936
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	6 cut(s)	83, 84, 962, 1466, 1565, 2250
Csp6I	GTAC	6 cut(s)	277, 664, 1080, 1932, 2265, 2408
CspCI	CAANNNNNGTGG	2 cut(s)	1477, 1512
CviQI	GTAC	6 cut(s)	277, 664, 1080, 1932, 2265, 2408
DdeI	CTNAG	7 cut(s)	177, 681, 891, 1878, 2268, 2297, 2352
DpnI	GATC	8 cut(s)	9, 182, 252, 315, 321, 503, 954, 2388
DpnII	GATC	8 cut(s)	7, 180, 250, 313, 319, 501, 952, 2386
DraI	TTTAAA	2 cut(s)	421, 1759
EaeI	YGGCCR	2 cut(s)	91, 1132
Eam1104I	CTCTTC	2 cut(s)	16, 1417
EarI	CTCTTC	2 cut(s)	16, 1417
Eco130I	CCWWGG	3 cut(s)	30, 861, 2308
Eco24I	GRGCYC	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	2119
Eco47I	GGWCC	4 cut(s)	962, 1466, 1565, 2250
Eco57I	CTGAAG	2 cut(s)	1398, 1545
Eco88I	CYCGRG	2 cut(s)	1459, 1850
Eco91I	GGTNACC	1 cut(s)	1546
EcoO109I	RGGNCCY	1 cut(s)	84
EcoO65I	GGTNACC	1 cut(s)	1546
EcoRI	GAATTC	1 cut(s)	1525
EcoRII	CCWGG	1 cut(s)	718
EcoT14I	CCWWGG	3 cut(s)	30, 861, 2308
EcoT22I	ATGCAT	2 cut(s)	672, 1072
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	3 cut(s)	30, 861, 2308
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	2 cut(s)	1452, 2263
FauI	CCCGC	1 cut(s)	405
FauNDI	CATATG	2 cut(s)	137, 672
FbaI	TGATCA	1 cut(s)	319
FblI	GTMKAC	2 cut(s)	576, 1821
Fnu4HI	GCNGC	8 cut(s)	43, 157, 434, 634, 1482, 1485, 1927, 2109
FokI	GGATG	6 cut(s)	47, 600, 702, 1057, 1198, 2045
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	8 cut(s)	43, 157, 434, 634, 1482, 1485, 1927, 2109
FspBI	CTAG	7 cut(s)	1032, 1077, 1440, 1515, 1856, 1860, 2045
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	8 cut(s)	43, 157, 434, 634, 1482, 1485, 1927, 2109
GsaI	CCCAGC	1 cut(s)	248
GsuI	CTGGAG	2 cut(s)	1329, 2079
HaeIII	GGCC	7 cut(s)	85, 93, 341, 1134, 1354, 1833, 2194
HapII	CCGG	1 cut(s)	1189
HhaI	GCGC	1 cut(s)	47
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	3 cut(s)	1370, 1474, 1693
HindII	GTYRAC	3 cut(s)	1370, 1474, 1693
HindIII	AAGCTT	1 cut(s)	1089
HpaI	GTTAAC	1 cut(s)	1474
HpaII	CCGG	1 cut(s)	1189
HphI	GGTGA	5 cut(s)	575, 1091, 1388, 1540, 2354
Hpy166II	GTNNAC	8 cut(s)	577, 678, 1082, 1370, 1474, 1520, 1693, 1822
Hpy188I	TCNGA	7 cut(s)	841, 1600, 1659, 1774, 2224, 2300, 2335
Hpy8I	GTNNAC	8 cut(s)	577, 678, 1082, 1370, 1474, 1520, 1693, 1822
Hpy99I	CGWCG	2 cut(s)	1314, 2200
HpyAV	CCTTC	8 cut(s)	190, 284, 389, 1225, 1617, 1984, 2116, 2390
HpyCH4III	ACNGT	4 cut(s)	1126, 1268, 1330, 1946
HpyCH4IV	ACGT	3 cut(s)	979, 1732, 2410
HpyF10VI	GCNNNNNNNGC	9 cut(s)	53, 105, 114, 162, 667, 702, 1028, 1852, 2105
HpyF3I	CTNAG	7 cut(s)	177, 681, 891, 1878, 2268, 2297, 2352
HpySE526I	ACGT	3 cut(s)	979, 1732, 2410
HspAI	GCGC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	319
KspAI	GTTAAC	1 cut(s)	1474
Kzo9I	GATC	8 cut(s)	7, 180, 250, 313, 319, 501, 952, 2386
LmnI	GCTCC	7 cut(s)	58, 113, 132, 1923, 1974, 1988, 2258
Lsp1109I	GCAGC	8 cut(s)	29, 143, 445, 645, 1468, 1496, 1938, 2120
LweI	GCATC	7 cut(s)	168, 1079, 1217, 1711, 1864, 2095, 2308
MaeI	CTAG	7 cut(s)	1032, 1077, 1440, 1515, 1856, 1860, 2045
MaeII	ACGT	3 cut(s)	979, 1732, 2410
MaeIII	GTNAC	4 cut(s)	190, 1324, 1546, 1836
MalI	GATC	8 cut(s)	9, 182, 252, 315, 321, 503, 954, 2388
MbiI	CCGCTC	1 cut(s)	1464
MboI	GATC	8 cut(s)	7, 180, 250, 313, 319, 501, 952, 2386
MfeI	CAATTG	1 cut(s)	539
MflI	RGATCY	3 cut(s)	501, 952, 2386
MhlI	GDGCHC	3 cut(s)	87, 687, 1428
MlsI	TGGCCA	1 cut(s)	93
MluNI	TGGCCA	1 cut(s)	93
MlyI	GAGTC	5 cut(s)	769, 1175, 1589, 1857, 2278
MmeI	TCCRAC	2 cut(s)	250, 1654
Mox20I	TGGCCA	1 cut(s)	93
Mph1103I	ATGCAT	2 cut(s)	672, 1072
MroXI	GAANNNNTTC	1 cut(s)	1267
MscI	TGGCCA	1 cut(s)	93
MslI	CAYNNNNRTG	4 cut(s)	67, 459, 671, 2063
Msp20I	TGGCCA	1 cut(s)	93
MspA1I	CMGCKG	5 cut(s)	412, 436, 1929, 2099, 2111
MspCI	CTTAAG	1 cut(s)	908
MspI	CCGG	1 cut(s)	1189
MspR9I	CCNGG	2 cut(s)	720, 1189
MunI	CAATTG	1 cut(s)	539
MvaI	CCWGG	1 cut(s)	720
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	9 cut(s)	53, 105, 114, 162, 667, 702, 1028, 1852, 2105
NciI	CCSGG	1 cut(s)	1189
NcoI	CCATGG	1 cut(s)	30
NdeI	CATATG	2 cut(s)	137, 672
NdeII	GATC	8 cut(s)	7, 180, 250, 313, 319, 501, 952, 2386
NheI	GCTAGC	2 cut(s)	1031, 1855
NlaIV	GGNNCC	8 cut(s)	60, 85, 128, 1061, 1468, 1537, 2251, 2388
NmuCI	GTSAC	3 cut(s)	190, 1546, 1836
NruI	TCGCGA	1 cut(s)	99
NsiI	ATGCAT	2 cut(s)	672, 1072
NspI	RCATGY	2 cut(s)	670, 883
NspV	TTCGAA	1 cut(s)	2030
PaeR7I	CTCGAG	1 cut(s)	1850
PagI	TCATGA	2 cut(s)	286, 1936
PaqCI	CACCTGC	1 cut(s)	122
PciI	ACATGT	1 cut(s)	879
PcsI	WCGNNNNNNNCGW	1 cut(s)	892
PdmI	GAANNNNTTC	1 cut(s)	1267
PfeI	GAWTC	5 cut(s)	146, 173, 836, 2185, 2359
PflFI	GACNNNGTC	1 cut(s)	1866
PflMI	CCANNNNNTGG	2 cut(s)	1673, 2411
PfoI	TCCNGGA	1 cut(s)	718
PkrI	GCNGC	8 cut(s)	44, 158, 435, 635, 1483, 1486, 1928, 2110
PleI	GAGTC	5 cut(s)	768, 1174, 1589, 1857, 2278
PpsI	GAGTC	5 cut(s)	768, 1174, 1589, 1857, 2278
Ppu21I	YACGTR	1 cut(s)	2411
PscI	ACATGT	1 cut(s)	879
PshBI	ATTAAT	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	718
PspEI	GGTNACC	1 cut(s)	1546
PspFI	CCCAGC	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	718
PspN4I	GGNNCC	8 cut(s)	60, 85, 128, 1061, 1468, 1537, 2251, 2388
PspOMI	GGGCCC	1 cut(s)	83
PspPI	GGNCC	6 cut(s)	83, 84, 962, 1466, 1565, 2250
PstI	CTGCAG	3 cut(s)	1003, 1054, 1486
PstNI	CAGNNNCTG	4 cut(s)	1049, 1421, 1490, 2261
PsuI	RGATCY	3 cut(s)	501, 952, 2386
PsyI	GACNNNGTC	1 cut(s)	1866
PvuII	CAGCTG	1 cut(s)	436
RruI	TCGCGA	1 cut(s)	99
RsaI	GTAC	6 cut(s)	278, 665, 1081, 1933, 2266, 2409
RsaNI	GTAC	6 cut(s)	277, 664, 1080, 1932, 2265, 2408
RseI	CAYNNNNRTG	4 cut(s)	67, 459, 671, 2063
SatI	GCNGC	8 cut(s)	43, 157, 434, 634, 1482, 1485, 1927, 2109
Sau3AI	GATC	8 cut(s)	7, 180, 250, 313, 319, 501, 952, 2386
Sau96I	GGNCC	6 cut(s)	83, 84, 962, 1466, 1565, 2250
ScaI	AGTACT	1 cut(s)	278
SchI	GAGTC	5 cut(s)	769, 1175, 1589, 1857, 2278
ScrFI	CCNGG	2 cut(s)	720, 1189
SduI	GDGCHC	3 cut(s)	87, 687, 1428
SfaNI	GCATC	7 cut(s)	168, 1079, 1217, 1711, 1864, 2095, 2308
SfcI	CTRYAG	3 cut(s)	999, 1050, 1482
Sfr274I	CTCGAG	1 cut(s)	1850
SfuI	TTCGAA	1 cut(s)	2030
SinI	GGWCC	4 cut(s)	962, 1466, 1565, 2250
SlaI	CTCGAG	1 cut(s)	1850
SmiMI	CAYNNNNRTG	4 cut(s)	67, 459, 671, 2063
SmlI	CTYRAG	3 cut(s)	771, 908, 1850
SmoI	CTYRAG	3 cut(s)	771, 908, 1850
SpeI	ACTAGT	1 cut(s)	1514
SspI	AATATT	1 cut(s)	901
SspMI	CTAG	7 cut(s)	1032, 1077, 1440, 1515, 1856, 1860, 2045
StyD4I	CCNGG	2 cut(s)	718, 1187
StyI	CCWWGG	3 cut(s)	30, 861, 2308
TaaI	ACNGT	4 cut(s)	1126, 1268, 1330, 1946
TaiI	ACGT	3 cut(s)	982, 1735, 2413
TaqI	TCGA	7 cut(s)	429, 1529, 1851, 1899, 2030, 2081, 2153
TaqII	GACCGA	1 cut(s)	2205
TatI	WGTACW	3 cut(s)	276, 663, 1079
TfiI	GAWTC	5 cut(s)	146, 173, 836, 2185, 2359
TscAI	CASTG	7 cut(s)	261, 685, 924, 935, 1054, 1236, 1495
TseFI	GTSAC	3 cut(s)	190, 1546, 1836
TseI	GCWGC	8 cut(s)	42, 156, 433, 633, 1481, 1484, 1926, 2108
Tsp45I	GTSAC	3 cut(s)	190, 1546, 1836
TspGWI	ACGGA	6 cut(s)	119, 630, 885, 1006, 1706, 2391
TspRI	CASTG	7 cut(s)	261, 685, 924, 935, 1054, 1236, 1495
Tth111I	GACNNNGTC	1 cut(s)	1866
Van91I	CCANNNNNTGG	2 cut(s)	1673, 2411
Vha464I	CTTAAG	1 cut(s)	908
VpaK11BI	GGWCC	4 cut(s)	962, 1466, 1565, 2250
VspI	ATTAAT	1 cut(s)	225
XapI	RAATTY	4 cut(s)	1160, 1525, 1745, 2071
XceI	RCATGY	2 cut(s)	670, 883
XhoI	CTCGAG	1 cut(s)	1850
XmiI	GTMKAC	2 cut(s)	576, 1821
XmnI	GAANNNNTTC	1 cut(s)	1267
XspI	CTAG	7 cut(s)	1032, 1077, 1440, 1515, 1856, 1860, 2045
ZrmI	AGTACT	1 cut(s)	278
Zsp2I	ATGCAT	2 cut(s)	672, 1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.