Rroxscaffold_4G00323480

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000854
Physical Location & Seq
Forward (+)
54224124 .. 54228040
3917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00323480.1

Sequence Viewer

Length: 2577 bp
ATGGACGATAGCTGTGCCGTGTGTGCCGACTCCCTCGAATGGGTTGCCTACGGCGCTTGCGGCCACAAGGAGGTCTGCTCCACCTGCGTCGCCCGCCTCCGTTTCATCTGCGACGATCGCCGCTGCTGCATCTGCAAGACCGACTGCGACGTCGTTTTCGTCACCAAGGCTTTAGGAGACTATACAAAGATGATTAAGGACTTCTCGGTCTTGCCATCCCAAGGGAGGGAGGGTCGCTTGGGACAATACTGGTACCATGAAGACACACAAGCATTTTTCGATGATGTGGATCACTACAAGATGATCAAGGCAATGTGCAAGCTTTCCTGCAGTGAATGTGACAAGCTGGAAGAGCAATCAATTGATAACTCAAGGCGTCGCCCGAGGTTTCGGAACATTGAACAGCTGAAGGGCCATTTATACCACCAACATAGGTTGTCTATGTGCCCTCTATGTTTGGAAGCGAGGAAGGTATTCATCTGTGAACAAAAGCTATATACTAAGGCACAGTTGAAGCAGCATATAAGTACAGGTGACTCTGAAGTTGATGGAAGTGAGAGTGAAAGAGGGGGCTTTATGGGGCATCCTATGTGTGAATTCTGCAGAACTCCATTCTATGGAGATAATGAACTATACGCCCACATGGGTACCGAGCACTACAAATGTCATTTATGCCATAGTCCTGGACAATATGAATATTATAGGTACTATGATGATCTCGAGATGCACTTCCGCCAAGGCCATTTCCTATGTGAAGATGAGTCATGTCTTGCGAAAAAGTTTATTGTCTTCCAATCTGAGGCAGAAATGAAGAGGCACAATACTATTGAACATGGGGGGCGTATGTCTCGTTCCAAGCGTAATGCTGCTCTCCAGATACCAACTAGCTTTCGATATCGACGAGGTAGTGAACAAGATAATAGGCGTGGAAGAGGTCGGTCATTTCGTCGTGAATCTCGTGATTCTTCTGATAATCAACTTTCTATGGCGATTCAAGCAAGTTTGGAGGCATCTACTGCAGATGATAGCACATTCCATGGTCCTTCCTCGTCCACTGGGCATGCTGCTTCAGATCTTGGAGATACAAGTGATATTGATCCAATCATTAATTCATTTGAATCCTTAAGTACAACAGATGCTGAAGCATCCTCAAGGTACCTTCAAGCCTTGGGGCAAAGTTCTGGGAAGGCGCCTTTGCAGGACTCTTCATTTCCTCCCCTCGCACCTGGAAGCAGTCAATCAACACCTATCTCGGATGGTTTGCCTAATAACACCATGGCAGCACATCTCCGCCGTCAAAACAATCGCAAGGTGGCTGTTAGGCCTGTTATTAGTTCTGGTCAGGCCTGGCCAGCAGCAGGGCGTGTACCTGTAGTACCGCCTACTAGTTCAGCTCAGGCGTGGCCTACTGCACAGGTTTCACCTTTAATATCACGTGGTTCTGGTCAGAACAAGATGGCCTTTGGGAATAGACCAGGACCTTCCAGTTATGCAAATTCTGCTCAGGCCCAAGTTGAGACTCGACAGACAACAGTTCCTGGATTCTCATCATCTGGTTCTTCGCGGGATTCATTCAACACCAACTCTGCTAGGATTAGCCATTCTGCATCTGCCCCTAATTTGGTCGAGAATGGATCTGTTAAACCTACCATCTCCGATTTCCCTCCAGTTTCTGCAGCACAAGTACGTAAGGTGCCCTCAATTAGCGAGCCAACTAGTCAGCCTGTATTGAAAGTGGATGTTCAAACTGCTAACAAGTCCTTGGTGGAAAAGATTCGTGCTGCCGTTGAGTTTGACGAAGAAAAATACAGTCTTTTTAAGGAGATATCTGGGCAGTATCGTCAGGGTTTAGTTGACACAGAAGTATATTTAGATTTTGTTCGGCAGTATGGCTTGTTGCATCTTGTCCTTGACTTGGCTAGACTCTGCCCTGATGCTCAGAAGCAGAGAGAGCTGATTGATGCCTACAATAAGAGTGTACGAAACAATGGTGCACAAGAGAATGGATGGTCTCAGGGAAGTGTCCGATTGAAAGATTCTAAGAAAGGTAAAGGGAAGAGTTCAGAAACGGAAAACAGTAAGGCTAAAGGGAAGAGTCATGAAGTGGAAAACAGTAGTTCAAAGGACACACTAGCAGATAGCATAATTAATTCTGTAAGGGAACTTCAATCAAACAACAGGCCTTCAGAAGAAGCGGTTGAGGTGTTGTCGAAGGATGGCTACCGTGCTGCCAAAGGCAAATCAAAGCTGATAGTTAATGAACGCCAGGAGGAATTGAATTCTCGCAATCAAGCCTTAACGGAGCCGAGGAGCCAAAAGGATTCGGTGCCAGCTGTTAGTGGATCTAATCCACATCTAGGAGATGGTGGTGGAGGAAGCAAGCAGCGGAAGAAAACCTCAAAATTCCATAGAGTTCGCTTGGGTGATGGCTCTGCTGCATCTCTCTTGGATCTTAGAAATTCTGATCCTCAGCCAGATGACGGGGGTGAACAATTAGATGAGAGCAGTAACTCGGCCGGAGGGTTGCCTGTCCATGGTGTTTGGAGACACAAAGCCGCCAATAAACTTTTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

858

Amino Acids

94.83

Weight (kDa)

8.19

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RING_ZNF598 PF25447 2 - 63 2.1e-07 ZNF598 RING finger domain
zf-C2H2_13 PF23230 219 - 273 2.1e-13 C2H2-type zinc finger
PAH_ZNF598 PF23202 582 - 657 6.8e-20 ZNF598 PAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 92
AasI GACNNNNNNGTC 2 cut(s) 149, 206
AatII GACGTC 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 92
Acc65I GGTACC 3 cut(s) 252, 647, 1155
AccB1I GGYRCC 6 cut(s) 252, 647, 1155, 1189, 1693, 2326
AccB7I CCANNNNNTGG 1 cut(s) 617
AccII CGCG 1 cut(s) 1564
AclWI GGATC 6 cut(s) 297, 1091, 1642, 2350, 2457, 2459
AcoI YGGCCR 3 cut(s) 61, 1349, 2514
AcsI RAATTY 5 cut(s) 596, 1495, 2278, 2402, 2458
AcuI CTGAAG 5 cut(s) 428, 561, 1053, 1161, 2169
AcvI CACGTG 1 cut(s) 1436
AcyI GRCGYC 3 cut(s) 150, 376, 1190
AflII CTTAAG 1 cut(s) 1123
AhlI ACTAGT 2 cut(s) 1385, 1715
AjnI CCWGG 6 cut(s) 682, 1225, 1346, 1474, 1537, 2265
AjuI GAANNNNNNNTTGG 2 cut(s) 1093, 1125
Alw21I GWGCWC 2 cut(s) 657, 1996
Alw26I GTCTC 5 cut(s) 171, 852, 1511, 2016, 2539
Alw44I GTGCAC 1 cut(s) 1992
AlwI GGATC 6 cut(s) 297, 1091, 1642, 2350, 2457, 2459
AlwNI CAGNNNCTG 3 cut(s) 1139, 1538, 1673
Ama87I CYCGRG 2 cut(s) 382, 719
ApaLI GTGCAC 1 cut(s) 1992
ApoI RAATTY 5 cut(s) 596, 1495, 2278, 2402, 2458
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AseI ATTAAT 2 cut(s) 1107, 2148
Asp700I GAANNNNTTC 2 cut(s) 473, 1773
Asp718I GGTACC 3 cut(s) 252, 647, 1155
AspLEI GCGC 2 cut(s) 56, 1192
AspS9I GGNCC 4 cut(s) 412, 1040, 1478, 1507
AsuHPI GGTGA 5 cut(s) 154, 545, 1413, 2435, 2498
AvaI CYCGRG 2 cut(s) 382, 719
AvaII GGWCC 2 cut(s) 1040, 1478
BaeGI GKGCMC 3 cut(s) 449, 1698, 1996
BaeI ACNNNNGTAYC 2 cut(s) 631, 664
BalI TGGCCA 1 cut(s) 1351
BanI GGYRCC 6 cut(s) 252, 647, 1155, 1189, 1693, 2326
BarI GAAGNNNNNNTAC 4 cut(s) 2148, 2180, 2204, 2236
BauI CACGAG 1 cut(s) 957
BbrPI CACGTG 1 cut(s) 1436
BbsI GAAGAC 2 cut(s) 267, 781
Bbv12I GWGCWC 2 cut(s) 657, 1996
BbvCI CCTCAGC 1 cut(s) 2469
BccI CCATC 9 cut(s) 223, 542, 1250, 1450, 1658, 2001, 2210, 2357, 2420
BceAI ACGGC 4 cut(s) 2, 67, 1278, 1769
BcgI CGANNNNNNTGC 3 cut(s) 26, 30, 60
BciT130I CCWGG 6 cut(s) 684, 1227, 1348, 1476, 1539, 2267
BclI TGATCA 1 cut(s) 303
BcoDI GTCTC 5 cut(s) 171, 852, 1511, 2016, 2539
BcuI ACTAGT 2 cut(s) 1385, 1715
BfaI CTAG 7 cut(s) 885, 1386, 1590, 1716, 1920, 2132, 2357
BfmI CTRYAG 5 cut(s) 328, 601, 1017, 1371, 1674
BfoI RGCGCY 2 cut(s) 57, 1193
BfrI CTTAAG 1 cut(s) 1123
BfuAI ACCTGC 1 cut(s) 92
BglII AGATCT 1 cut(s) 1072
Bme1390I CCNGG 6 cut(s) 684, 1227, 1348, 1476, 1539, 2267
Bme18I GGWCC 2 cut(s) 1040, 1478
BmeT110I CYCGRG 2 cut(s) 382, 719
BmgT120I GGNCC 4 cut(s) 412, 1040, 1478, 1507
BmiI GGNNCC 8 cut(s) 254, 649, 1157, 1191, 1695, 2304, 2312, 2328
BmrFI CCNGG 6 cut(s) 684, 1227, 1348, 1476, 1539, 2267
BmrI ACTGGG 1 cut(s) 1065
BmuI ACTGGG 1 cut(s) 1065
BpiI GAAGAC 2 cut(s) 267, 781
BplI GAGNNNNNCTC 2 cut(s) 62, 94
BpmI CTGGAG 2 cut(s) 857, 1650
Bpu10I CCTNAGC 3 cut(s) 1395, 1503, 2469
BpuEI CTTGAG 2 cut(s) 355, 1135
BsaAI YACGTR 2 cut(s) 1436, 1688
BsaBI GATNNNNATC 3 cut(s) 288, 1095, 1546
BsaHI GRCGYC 3 cut(s) 150, 376, 1190
BsaI GGTCTC 1 cut(s) 2016
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bse1I ACTGG 4 cut(s) 254, 1060, 1485, 1667
Bse3DI GCAATG 1 cut(s) 318
Bse8I GATNNNNATC 3 cut(s) 288, 1095, 1546
BseBI CCWGG 6 cut(s) 684, 1227, 1348, 1476, 1539, 2267
BseGI GGATG 7 cut(s) 215, 583, 1145, 1261, 1744, 2012, 2221
BseJI GATNNNNATC 3 cut(s) 288, 1095, 1546
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 6 cut(s) 789, 1409, 1517, 1952, 2027, 2483
BseNI ACTGG 4 cut(s) 254, 1060, 1485, 1667
BseRI GAGGAG 1 cut(s) 2323
BseSI GKGCMC 3 cut(s) 449, 1698, 1996
BseX3I CGGCCG 1 cut(s) 2514
BsgI GTGCAG 1 cut(s) 1395
Bsh1236I CGCG 1 cut(s) 1564
Bsh1285I CGRYCG 2 cut(s) 118, 2517
BshNI GGYRCC 6 cut(s) 252, 647, 1155, 1189, 1693, 2326
BsiEI CGRYCG 2 cut(s) 118, 2517
BsiHKAI GWGCWC 2 cut(s) 657, 1996
BsiHKCI CYCGRG 2 cut(s) 382, 719
BsiSI CCGG 1 cut(s) 2517
BslFI GGGAC 1 cut(s) 255
BsmAI GTCTC 5 cut(s) 171, 852, 1511, 2016, 2539
BsmFI GGGAC 1 cut(s) 255
Bso31I GGTCTC 1 cut(s) 2016
BsoBI CYCGRG 2 cut(s) 382, 719
Bsp1286I GDGCHC 4 cut(s) 449, 657, 1698, 1996
Bsp19I CCATGG 3 cut(s) 1036, 1275, 2533
BspCNI CTCAG 6 cut(s) 790, 1408, 1516, 1951, 2026, 2482
BspFNI CGCG 1 cut(s) 1564
BspHI TCATGA 1 cut(s) 2098
BspLI GGNNCC 8 cut(s) 254, 649, 1157, 1191, 1695, 2304, 2312, 2328
BspMAI CTGCAG 4 cut(s) 332, 605, 1021, 1678
BspMI ACCTGC 1 cut(s) 92
BspPI GGATC 6 cut(s) 297, 1091, 1642, 2350, 2457, 2459
BspQI GCTCTTC 1 cut(s) 345
BspT107I GGYRCC 6 cut(s) 252, 647, 1155, 1189, 1693, 2326
BspTI CTTAAG 1 cut(s) 1123
BspTNI GGTCTC 1 cut(s) 2016
BsrDI GCAATG 1 cut(s) 318
BsrI ACTGG 4 cut(s) 254, 1060, 1485, 1667
BssNI GRCGYC 3 cut(s) 150, 376, 1190
BssSI CACGAG 1 cut(s) 957
BssT1I CCWWGG 8 cut(s) 165, 220, 736, 1036, 1167, 1275, 1761, 2533
Bst2BI CACGAG 1 cut(s) 957
Bst2UI CCWGG 6 cut(s) 684, 1227, 1348, 1476, 1539, 2267
Bst4CI ACNGT 6 cut(s) 510, 1534, 1811, 2078, 2114, 2225
Bst6I CTCTTC 6 cut(s) 345, 806, 925, 1210, 2051, 2087
BstACI GRCGYC 3 cut(s) 150, 376, 1190
BstAFI CTTAAG 1 cut(s) 1123
BstAPI GCANNNNNTGC 2 cut(s) 1016, 1499
BstBAI YACGTR 2 cut(s) 1436, 1688
BstC8I GCNNGC 8 cut(s) 58, 94, 320, 1062, 1353, 1709, 2331, 2381
BstDEI CTNAG 9 cut(s) 501, 798, 1395, 1503, 1938, 2013, 2040, 2453, 2469
BstDSI CCRYGG 3 cut(s) 1036, 1275, 2533
BstF5I GGATG 7 cut(s) 215, 583, 1145, 1261, 1744, 2012, 2221
BstFNI CGCG 1 cut(s) 1564
BstH2I RGCGCY 2 cut(s) 57, 1193
BstHHI GCGC 2 cut(s) 56, 1192
BstMAI GTCTC 5 cut(s) 171, 852, 1511, 2016, 2539
BstMCI CGRYCG 2 cut(s) 118, 2517
BstNI CCWGG 6 cut(s) 684, 1227, 1348, 1476, 1539, 2267
BstNSI RCATGY 1 cut(s) 1064
BstSCI CCNGG 6 cut(s) 682, 1225, 1346, 1474, 1537, 2265
BstSFI CTRYAG 5 cut(s) 328, 601, 1017, 1371, 1674
BstSLI GKGCMC 3 cut(s) 449, 1698, 1996
BstSNI TACGTA 1 cut(s) 1688
BstUI CGCG 1 cut(s) 1564
BstV2I GAAGAC 2 cut(s) 267, 781
BstX2I RGATCY 4 cut(s) 1072, 1634, 2342, 2449
BstXI CCANNNNNNTGG 1 cut(s) 683
BstYI RGATCY 4 cut(s) 1072, 1634, 2342, 2449
BstZI CGGCCG 1 cut(s) 2514
BtgI CCRYGG 3 cut(s) 1036, 1275, 2533
BtsCI GGATG 7 cut(s) 215, 583, 1145, 1261, 1744, 2012, 2221
BtsI GCAGTG 1 cut(s) 337
BtsIMutI CAGTG 2 cut(s) 337, 1053
BveI ACCTGC 1 cut(s) 92
Cac8I GCNNGC 8 cut(s) 58, 94, 320, 1062, 1353, 1709, 2331, 2381
CaiI CAGNNNCTG 3 cut(s) 1139, 1538, 1673
CciI TCATGA 1 cut(s) 2098
CfoI GCGC 2 cut(s) 56, 1192
Cfr13I GGNCC 4 cut(s) 412, 1040, 1478, 1507
CseI GACGC 2 cut(s) 76, 365
CviAII CATG 9 cut(s) 257, 643, 765, 833, 1037, 1061, 1276, 2099, 2534
DdeI CTNAG 9 cut(s) 501, 798, 1395, 1503, 1938, 2013, 2040, 2453, 2469
DinI GGCGCC 1 cut(s) 1191
DrdI GACNNNNNNGTC 2 cut(s) 149, 206
DseDI GACNNNNNNGTC 2 cut(s) 149, 206
EaeI YGGCCR 3 cut(s) 61, 1349, 2514
EagI CGGCCG 1 cut(s) 2514
Eam1104I CTCTTC 6 cut(s) 345, 806, 925, 1210, 2051, 2087
EarI CTCTTC 6 cut(s) 345, 806, 925, 1210, 2051, 2087
EciI GGCGGA 2 cut(s) 722, 1280
EclXI CGGCCG 1 cut(s) 2514
Eco105I TACGTA 1 cut(s) 1688
Eco130I CCWWGG 8 cut(s) 165, 220, 736, 1036, 1167, 1275, 1761, 2533
Eco147I AGGCCT 3 cut(s) 1324, 1346, 2182
Eco31I GGTCTC 1 cut(s) 2016
Eco32I GATATC 2 cut(s) 896, 1827
Eco47I GGWCC 2 cut(s) 1040, 1478
Eco52I CGGCCG 1 cut(s) 2514
Eco57I CTGAAG 5 cut(s) 428, 561, 1053, 1161, 2169
Eco72I CACGTG 1 cut(s) 1436
Eco88I CYCGRG 2 cut(s) 382, 719
EcoO109I RGGNCCY 1 cut(s) 1478
EcoRI GAATTC 2 cut(s) 596, 2278
EcoRII CCWGG 6 cut(s) 682, 1225, 1346, 1474, 1537, 2265
EcoRV GATATC 2 cut(s) 896, 1827
EcoT14I CCWWGG 8 cut(s) 165, 220, 736, 1036, 1167, 1275, 1761, 2533
EgeI GGCGCC 1 cut(s) 1191
EheI GGCGCC 1 cut(s) 1191
ErhI CCWWGG 8 cut(s) 165, 220, 736, 1036, 1167, 1275, 1761, 2533
FaeI CATG 9 cut(s) 260, 646, 768, 836, 1040, 1064, 1279, 2102, 2537
FalI AAGNNNNNCTT 2 cut(s) 1445, 1477
FaqI GGGAC 1 cut(s) 255
FatI CATG 9 cut(s) 256, 642, 764, 832, 1036, 1060, 1275, 2098, 2533
FauI CCCGC 2 cut(s) 101, 1557
FbaI TGATCA 1 cut(s) 303
FokI GGATG 7 cut(s) 202, 570, 1132, 1268, 1751, 2019, 2228
FspBI CTAG 7 cut(s) 885, 1386, 1590, 1716, 1920, 2132, 2357
GlaI GCGC 2 cut(s) 55, 1191
GsuI CTGGAG 2 cut(s) 857, 1650
HaeII RGCGCY 2 cut(s) 57, 1193
HapII CCGG 1 cut(s) 2517
HgaI GACGC 2 cut(s) 76, 365
HhaI GCGC 2 cut(s) 56, 1192
Hin1I GRCGYC 3 cut(s) 150, 376, 1190
Hin1II CATG 9 cut(s) 260, 646, 768, 836, 1040, 1064, 1279, 2102, 2537
Hin6I GCGC 2 cut(s) 54, 1190
HinP1I GCGC 2 cut(s) 54, 1190
HincII GTYRAC 1 cut(s) 1855
HindII GTYRAC 1 cut(s) 1855
HindIII AAGCTT 1 cut(s) 320
HpaII CCGG 1 cut(s) 2517
HphI GGTGA 5 cut(s) 154, 545, 1413, 2435, 2498
Hpy166II GTNNAC 8 cut(s) 485, 911, 1053, 1367, 1855, 1979, 1994, 2489
Hpy188III TCNNGA 7 cut(s) 719, 721, 874, 950, 959, 1627, 2099
Hpy8I GTNNAC 8 cut(s) 485, 911, 1053, 1367, 1855, 1979, 1994, 2489
Hpy99I CGWCG 7 cut(s) 92, 116, 152, 155, 381, 903, 951
HpyAV CCTTC 8 cut(s) 403, 463, 1053, 1169, 1180, 1491, 2193, 2206
HpyCH4III ACNGT 6 cut(s) 510, 1534, 1811, 2078, 2114, 2225
HpyCH4IV ACGT 3 cut(s) 150, 1435, 1687
HpyF3I CTNAG 9 cut(s) 501, 798, 1395, 1503, 1938, 2013, 2040, 2453, 2469
HpySE526I ACGT 3 cut(s) 150, 1435, 1687
Hsp92I GRCGYC 3 cut(s) 150, 376, 1190
Hsp92II CATG 9 cut(s) 260, 646, 768, 836, 1040, 1064, 1279, 2102, 2537
HspAI GCGC 2 cut(s) 54, 1190
KasI GGCGCC 1 cut(s) 1189
KpnI GGTACC 3 cut(s) 256, 651, 1159
Ksp22I TGATCA 1 cut(s) 303
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 3 cut(s) 83, 2302, 2310
MaeI CTAG 7 cut(s) 885, 1386, 1590, 1716, 1920, 2132, 2357
MaeII ACGT 3 cut(s) 150, 1435, 1687
MaeIII GTNAC 4 cut(s) 160, 338, 533, 2507
MfeI CAATTG 1 cut(s) 360
MflI RGATCY 4 cut(s) 1072, 1634, 2342, 2449
MhlI GDGCHC 4 cut(s) 449, 657, 1698, 1996
MlsI TGGCCA 1 cut(s) 1351
MluNI TGGCCA 1 cut(s) 1351
Mly113I GGCGCC 1 cut(s) 1190
MlyI GAGTC 7 cut(s) 23, 530, 770, 1196, 1513, 1917, 2104
Mox20I TGGCCA 1 cut(s) 1351
MroXI GAANNNNTTC 2 cut(s) 473, 1773
MscI TGGCCA 1 cut(s) 1351
MseI TTAA 9 cut(s) 195, 1107, 1124, 1427, 1641, 1818, 2148, 2256, 2297
Msp20I TGGCCA 1 cut(s) 1351
MspA1I CMGCKG 4 cut(s) 123, 406, 2333, 2386
MspCI CTTAAG 1 cut(s) 1123
MspI CCGG 1 cut(s) 2517
MspR9I CCNGG 6 cut(s) 684, 1227, 1348, 1476, 1539, 2267
MunI CAATTG 1 cut(s) 360
MvaI CCWGG 6 cut(s) 684, 1227, 1348, 1476, 1539, 2267
MvnI CGCG 1 cut(s) 1564
NarI GGCGCC 1 cut(s) 1190
NcoI CCATGG 3 cut(s) 1036, 1275, 2533
NlaIII CATG 9 cut(s) 260, 646, 768, 836, 1040, 1064, 1279, 2102, 2537
NlaIV GGNNCC 8 cut(s) 254, 649, 1157, 1191, 1695, 2304, 2312, 2328
NmeAIII GCCGAG 2 cut(s) 2331, 2492
NmuCI GTSAC 3 cut(s) 160, 338, 533
NspI RCATGY 1 cut(s) 1064
PaeI GCATGC 1 cut(s) 1064
PaeR7I CTCGAG 1 cut(s) 719
PagI TCATGA 1 cut(s) 2098
PaqCI CACCTGC 1 cut(s) 92
PceI AGGCCT 3 cut(s) 1324, 1346, 2182
PciSI GCTCTTC 1 cut(s) 345
PcsI WCGNNNNNNNCGW 5 cut(s) 156, 856, 898, 943, 955
PdmI GAANNNNTTC 2 cut(s) 473, 1773
PfeI GAWTC 9 cut(s) 953, 962, 991, 1118, 1542, 1568, 1774, 2036, 2321
PflMI CCANNNNNTGG 1 cut(s) 617
PfoI TCCNGGA 2 cut(s) 682, 1537
Ple19I CGATCG 1 cut(s) 118
PleI GAGTC 7 cut(s) 23, 530, 769, 1196, 1513, 1917, 2103
PluTI GGCGCC 1 cut(s) 1193
PmaCI CACGTG 1 cut(s) 1436
PmlI CACGTG 1 cut(s) 1436
PpsI GAGTC 7 cut(s) 23, 530, 769, 1196, 1513, 1917, 2103
Ppu21I YACGTR 2 cut(s) 1436, 1688
PpuMI RGGWCCY 1 cut(s) 1478
PshBI ATTAAT 2 cut(s) 1107, 2148
Psp5II RGGWCCY 1 cut(s) 1478
Psp6I CCWGG 6 cut(s) 682, 1225, 1346, 1474, 1537, 2265
PspCI CACGTG 1 cut(s) 1436
PspGI CCWGG 6 cut(s) 682, 1225, 1346, 1474, 1537, 2265
PspN4I GGNNCC 8 cut(s) 254, 649, 1157, 1191, 1695, 2304, 2312, 2328
PspPI GGNCC 4 cut(s) 412, 1040, 1478, 1507
PspPPI RGGWCCY 1 cut(s) 1478
PsrI GAACNNNNNNTAC 2 cut(s) 835, 867
PstI CTGCAG 4 cut(s) 332, 605, 1021, 1678
PstNI CAGNNNCTG 3 cut(s) 1139, 1538, 1673
PsuI RGATCY 4 cut(s) 1072, 1634, 2342, 2449
PvuI CGATCG 1 cut(s) 118
PvuII CAGCTG 2 cut(s) 406, 2333
SapI GCTCTTC 1 cut(s) 345
SaqAI TTAA 9 cut(s) 195, 1107, 1124, 1427, 1641, 1818, 2148, 2256, 2297
Sau96I GGNCC 4 cut(s) 412, 1040, 1478, 1507
SchI GAGTC 7 cut(s) 23, 530, 770, 1196, 1513, 1917, 2104
ScrFI CCNGG 6 cut(s) 684, 1227, 1348, 1476, 1539, 2267
SduI GDGCHC 4 cut(s) 449, 657, 1698, 1996
SfcI CTRYAG 5 cut(s) 328, 601, 1017, 1371, 1674
SfoI GGCGCC 1 cut(s) 1191
Sfr274I CTCGAG 1 cut(s) 719
SinI GGWCC 2 cut(s) 1040, 1478
SlaI CTCGAG 1 cut(s) 719
SmlI CTYRAG 4 cut(s) 370, 719, 1123, 1150
SmoI CTYRAG 4 cut(s) 370, 719, 1123, 1150
SnaBI TACGTA 1 cut(s) 1688
SpeI ACTAGT 2 cut(s) 1385, 1715
SphI GCATGC 1 cut(s) 1064
SseBI AGGCCT 3 cut(s) 1324, 1346, 2182
SspDI GGCGCC 1 cut(s) 1189
SspI AATATT 1 cut(s) 698
SspMI CTAG 7 cut(s) 885, 1386, 1590, 1716, 1920, 2132, 2357
StuI AGGCCT 3 cut(s) 1324, 1346, 2182
StyD4I CCNGG 6 cut(s) 682, 1225, 1346, 1474, 1537, 2265
StyI CCWWGG 8 cut(s) 165, 220, 736, 1036, 1167, 1275, 1761, 2533
TaaI ACNGT 6 cut(s) 510, 1534, 1811, 2078, 2114, 2225
TaiI ACGT 3 cut(s) 153, 1438, 1690
TaqI TCGA 8 cut(s) 36, 279, 720, 892, 898, 1522, 1626, 2210
TaqII GACCGA 3 cut(s) 155, 196, 927
TatI WGTACW 2 cut(s) 527, 1127
TauI GCSGC 3 cut(s) 63, 123, 2558
TfiI GAWTC 9 cut(s) 953, 962, 991, 1118, 1542, 1568, 1774, 2036, 2321
Tru1I TTAA 9 cut(s) 195, 1107, 1124, 1427, 1641, 1818, 2148, 2256, 2297
Tru9I TTAA 9 cut(s) 195, 1107, 1124, 1427, 1641, 1818, 2148, 2256, 2297
TscAI CASTG 2 cut(s) 337, 1060
TseFI GTSAC 3 cut(s) 160, 338, 533
Tsp45I GTSAC 3 cut(s) 160, 338, 533
TspGWI ACGGA 3 cut(s) 89, 2084, 2315
TspRI CASTG 2 cut(s) 337, 1060
Van91I CCANNNNNTGG 1 cut(s) 617
Vha464I CTTAAG 1 cut(s) 1123
VneI GTGCAC 1 cut(s) 1992
VpaK11BI GGWCC 2 cut(s) 1040, 1478
VspI ATTAAT 2 cut(s) 1107, 2148
XapI RAATTY 5 cut(s) 596, 1495, 2278, 2402, 2458
XceI RCATGY 1 cut(s) 1064
XhoI CTCGAG 1 cut(s) 719
XmnI GAANNNNTTC 2 cut(s) 473, 1773
XspI CTAG 7 cut(s) 885, 1386, 1590, 1716, 1920, 2132, 2357
ZraI GACGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.