MD07G1045700.v1.1

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000854
Physical Location & Seq
Forward (+)
3890084 .. 3894436
4353 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1045700.v1.1.491

Sequence Viewer

Length: 2637 bp
ATGGACGATAGCTGTGCGGTGTGTGCCGATCCTCTCGAATGGGTCGCATACGGTGCCTGTGGACATCGCGAAGTCTGCTCCACCTGCGTCGTTCGTCTCCGCTTCATCTGCAACGATCGCCGATGCTGCATCTGCAAGACCGAGTCGGACGTCGTTTTTATCACCAAGGCTTTAGGAGATTATACAAGGATGATTAATGATTTCTCAGTCTTGCCAAATGATGTAAGGGAGGGTCGCGTGGGATCGTATTGGTACCACGAGGACACTCAAGCATTTTTTGATGATTTGGACCACTACAAGATGATCAAGGCAATGTGCAAGCTTTCATGTAGCGAATGTGACAAGATGGATGAGCAATCAAACGATGGCCCCAAGCGTCGCGGGAGGATTCGGAATCTTGATCATCTGAAGAATCATTTATACCACCAACATAGGTTGTGGATGTGCTCTTTATGTTTGGAAGGGAGGAAGGTGTTTATATGTGAACAAAAGCTATATACGAGAGCACAATTGAATCGGCATATAAATACAGGTGATTCTGAAGTGGATGGAAGTGAGAGTGAAAGAGGTGGCTTCATGGGACATCCTATGTGTGAATTTTGCAGAACCTCATTTTATGGGGATAATGAGCTGTACTCCCACATGACTACTGATCACTATACTTGTCATATATGCCAAAGGCAGAATCCTGGGCAATATGAATATTATAAGAATTATGATGACCTGGAGATGCACTTCCGCCAAGGTCATTTCCTATGTGAAGATGAGTCGTGCCTCAGCAAAAAGTTTGTTGTCTTCCAATCTGAGGCGGAAATGAAGAGGCATAATACACTTGAACATGGAGGTCGCATGTCTCGTTCTAAGCGTAATGCTGCTCTGCAGATACCAACTAGCTTCAGATATCAACGGAGTAGTGAACAAGATCATCGACGTGGAAGAGGCGGAAGAGGTGGAAGAGGTCGGACATTTCGTCCTGATTCTTCTGAAAATCAACTTTCTATGGCTATTCAAGCAAGTTTGGAGACTGTTCATGCTGATAGAACATACGATGACCCTTCATCCTCCAGTGTGCAAGTGCCTCCAGATATTCGGGATACTGGCGATATTGATCCAATCACTGATTCATTTGAATCATTAAGTACAACAGATGCTGAAACATCTTCAAGGTACCGTCAAGCTGTGGGGCCCATTTCTAGGAATGGGCGTTTGGAAGAATCTTTCTTTCCTCCCCTCTCAACGGCACCTGGCAACAGTTCAAACCCCAAACAAGATTCAGATGGTTTGCCTAGCAACACCATGGCATCGCATCTCCGCCGGCAAAACCATAAGGTGGCTGTTAATAGCTCTGGAAAGGCTTGGCCAGCAGCAACGCGTGGGCCTGTGGCTGTTAGTAGTTCTGAACAGGATTGGCCAGCAGCAACGCGTGGGCCTGTAGTACAGCCTACTCATTCAGCTCAGGCTTGGCCTGCAACAAATGTTTCATCCGTGTCAACTCTTGTTTCTGGTCAGAACAATATGGGCTTTGGTAATGGACCCAGACCATCTAGTTATGCCTCTCAGGCTCAAGTTGAGACTAGACAGAATGCCTTTGGTAATGGTGTGAGACCGTCGAGTTATGCAAGTTCTGCGGCTCATGTTGAGACTAGACAGGCAACGGTACCTGGATTATTATCATATGGTGCTTCGAGGGATTCAAGCAACCCCAAGCCTGGTAGGATCAGCCACTCTACGTCAGCTCCTAATTTGGTCGAAAATGGATCTGTTCATCCTTCCAATTCTGATTTTCCTCCAGTTTCTGCAGTACAAGTGCGTAAGTTGCCCTCAACTACCCAGCCTTTATTGAAAGTGGAGGATGTTCAAACTGCTAACAAGTCCTTGGTGGAAAAGATTCGAGCTGGTCTTGAATTTGATGAGGAAAAATACACTATTTTTAAAGATATATCAGGACAGTATCGTCAGGGTTTGGTTGACACGGGAATTTATCTAGATTTTGTGCGGCAGTTTGGCTTGCTTCATCTGGTCCTTGATTTGGCTAGACTCTGCCCTGATTCGCAGAAGCAGAAAGAGCTGATTGATGCCTACAATACCGGTACCCGCAACGGATGGTCTCAGGACAGTGCTAAATTGAAAGATGGTAATAATTCTAAGAAAGGTAAGGGGAAGATATCAGAGGCTGAAAACAGTAATTCTAAGAACACGCTAGCGGATAGCATTATTAGTTCTGTACGGGAACTTCAATCAGACTACAGGCCTATGGAAGAAGCTGTGGAGGTGTTGACAAAGGACGGGTACCGTGGTGCCAAAGGAAAATCAAAGCAGTTTGCAAATGAGCACCAGGAGGAGTTAAATTCTCGCAGTCAACCTCTAGTACAACTGAGGGGCCAAAAGGATTCCCTGCCAGCTGCTAGTGAATCTAATCCGAATTTAGTGGATGGCGGTGGAGGGAGTAAGCAGCGGAAGAAAACTTCCAAATTTCATAGAGTCCGCTTGGGTGATGCTGCAGCACTTTTAGATCTCGGAAATTCTGATTCTCAGCCAGATGCCGGTGATGAAGGATTAAATGGAAGCAGTAACTCGGCTGGAGGATTGCCTGTCAAAGGTGTGTGGCGGAAAGGAACTCAAAAACTCTTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

879

Amino Acids

97.32

Weight (kDa)

7.76

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RING_ZNF598 PF25447 2 - 62 1.3e-07 ZNF598 RING finger domain
zf-C2H2_13 PF23230 219 - 275 1.3e-17 C2H2-type zinc finger
PAH_ZNF598 PF23202 620 - 695 1.6e-20 ZNF598 PAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 708
AarI CACCTGC 1 cut(s) 92
AasI GACNNNNNNGTC 1 cut(s) 1953
AatII GACGTC 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 92
Acc65I GGTACC 5 cut(s) 252, 1167, 1657, 2090, 2289
AccB1I GGYRCC 8 cut(s) 53, 252, 1167, 1240, 1657, 2090, 2289, 2297
AccB7I CCANNNNNTGG 1 cut(s) 1330
AccII CGCG 5 cut(s) 69, 237, 381, 1372, 1423
AclWI GGATC 5 cut(s) 23, 250, 1103, 1724, 1765
AcoI YGGCCR 2 cut(s) 1358, 1409
AcsI RAATTY 7 cut(s) 596, 1904, 1977, 2347, 2422, 2471, 2521
AcuI CTGAAG 3 cut(s) 428, 561, 880
AcyI GRCGYC 1 cut(s) 150
AfiI CCNNNNNNNGG 8 cut(s) 805, 1194, 1237, 1330, 1709, 2029, 2543, 2597
AflIII ACRYGT 2 cut(s) 1370, 1421
AgeI ACCGGT 1 cut(s) 2087
AhdI GACNNNNNGTC 1 cut(s) 969
AjiI CACGTC 1 cut(s) 932
AjnI CCWGG 6 cut(s) 688, 723, 1243, 1660, 1708, 2334
AjuI GAANNNNNNNTTGG 4 cut(s) 1105, 1137, 1190, 1222
Alw21I GWGCWC 3 cut(s) 449, 508, 2334
Alw26I GTCTC 7 cut(s) 101, 858, 1016, 1565, 1597, 1634, 2112
AlwI GGATC 5 cut(s) 23, 250, 1103, 1724, 1765
AlwNI CAGNNNCTG 3 cut(s) 1151, 1796, 2174
AoxI GGCC 9 cut(s) 367, 1184, 1358, 1376, 1409, 1427, 1463, 2249, 2380
ApaI GGGCCC 1 cut(s) 1188
ApeKI GCWGC 8 cut(s) 126, 872, 1364, 1415, 2402, 2452, 2498, 2501
ApoI RAATTY 7 cut(s) 596, 1904, 1977, 2347, 2422, 2471, 2521
AseI ATTAAT 1 cut(s) 195
AsiGI ACCGGT 1 cut(s) 2087
Asp700I GAANNNNTTC 1 cut(s) 1887
Asp718I GGTACC 5 cut(s) 252, 1167, 1657, 2090, 2289
AspS9I GGNCC 9 cut(s) 289, 368, 1184, 1185, 1376, 1427, 1532, 2020, 2380
AsuHPI GGTGA 4 cut(s) 154, 545, 2504, 2558
AsuNHI GCTAGC 1 cut(s) 2200
AvaII GGWCC 3 cut(s) 289, 1532, 2020
BaeGI GKGCMC 1 cut(s) 1188
BaeI ACNNNNGTAYC 2 cut(s) 2281, 2314
BalI TGGCCA 2 cut(s) 1360, 1411
BanI GGYRCC 8 cut(s) 53, 252, 1167, 1240, 1657, 2090, 2289, 2297
BanII GRGCYC 1 cut(s) 1188
BarI GAAGNNNNNNTAC 2 cut(s) 2217, 2249
BauI CACGAG 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 787
Bbv12I GWGCWC 3 cut(s) 449, 508, 2334
BbvCI CCTCAGC 1 cut(s) 776
BbvI GCAGC 8 cut(s) 113, 859, 1376, 1427, 2389, 2464, 2485, 2513
BccI CCATC 8 cut(s) 340, 359, 542, 1271, 1549, 2097, 2126, 2426
BceAI ACGGC 1 cut(s) 1254
BcgI CGANNNNNNTGC 1 cut(s) 30
BciT130I CCWGG 6 cut(s) 690, 725, 1245, 1662, 1710, 2336
BciVI GTATCC 1 cut(s) 1087
BclI TGATCA 3 cut(s) 303, 400, 652
BcoDI GTCTC 7 cut(s) 101, 858, 1016, 1565, 1597, 1634, 2112
BfmI CTRYAG 5 cut(s) 878, 1431, 1797, 2245, 2499
BfuAI ACCTGC 1 cut(s) 92
BfuI GTATCC 1 cut(s) 1087
BglI GCCNNNNNGGC 1 cut(s) 1559
BglII AGATCT 1 cut(s) 2512
Bme1390I CCNGG 6 cut(s) 690, 725, 1245, 1662, 1710, 2336
Bme18I GGWCC 3 cut(s) 289, 1532, 2020
BmeRI GACNNNNNGTC 1 cut(s) 969
BmgBI CACGTC 1 cut(s) 932
BmgT120I GGNCC 9 cut(s) 289, 368, 1184, 1185, 1376, 1427, 1532, 2020, 2380
BmrFI CCNGG 6 cut(s) 690, 725, 1245, 1662, 1710, 2336
BmsI GCATC 9 cut(s) 113, 138, 720, 1138, 1310, 1315, 2065, 2485, 2530
BmtI GCTAGC 1 cut(s) 2204
BpiI GAAGAC 1 cut(s) 787
BplI GAGNNNNNCTC 2 cut(s) 620, 652
BpmI CTGGAG 5 cut(s) 746, 1048, 1065, 1773, 2601
Bpu10I CCTNAGC 2 cut(s) 776, 1455
BpuEI CTTGAG 2 cut(s) 252, 1548
BsaBI GATNNNNATC 2 cut(s) 1107, 1669
BsaHI GRCGYC 1 cut(s) 150
BsaI GGTCTC 2 cut(s) 1597, 2112
BsaJI CCNNGG 6 cut(s) 165, 689, 742, 1296, 1875, 2293
BsaWI WCCGGW 1 cut(s) 2087
BsaXI ACNNNNNCTCC 2 cut(s) 1720, 1750
Bsc4I CCNNNNNNNGG 8 cut(s) 805, 1194, 1237, 1330, 1709, 2029, 2543, 2597
Bse118I RCCGGY 3 cut(s) 1314, 2087, 2543
Bse1I ACTGG 3 cut(s) 1065, 1102, 1790
Bse3DI GCAATG 1 cut(s) 318
Bse8I GATNNNNATC 2 cut(s) 1107, 1669
BseBI CCWGG 6 cut(s) 690, 725, 1245, 1662, 1710, 2336
BseDI CCNNGG 6 cut(s) 165, 689, 742, 1296, 1875, 2293
BseJI GATNNNNATC 2 cut(s) 1107, 1669
BseLI CCNNNNNNNGG 8 cut(s) 805, 1194, 1237, 1330, 1709, 2029, 2543, 2597
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 8 cut(s) 219, 790, 795, 1469, 1571, 2123, 2366, 2546
BseNI ACTGG 3 cut(s) 1065, 1102, 1790
BseRI GAGGAG 1 cut(s) 2354
BseSI GKGCMC 1 cut(s) 1188
BseXI GCAGC 8 cut(s) 113, 859, 1376, 1427, 2389, 2464, 2485, 2513
BseYI CCCAGC 1 cut(s) 1830
Bsh1236I CGCG 5 cut(s) 69, 237, 381, 1372, 1423
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 9 cut(s) 369, 1186, 1360, 1378, 1411, 1429, 1465, 2251, 2382
BshNI GGYRCC 8 cut(s) 53, 252, 1167, 1240, 1657, 2090, 2289, 2297
BshTI ACCGGT 1 cut(s) 2087
BsiEI CGRYCG 1 cut(s) 118
BsiHKAI GWGCWC 3 cut(s) 449, 508, 2334
BsiSI CCGG 3 cut(s) 1315, 2088, 2544
BslFI GGGAC 1 cut(s) 594
BslI CCNNNNNNNGG 8 cut(s) 805, 1194, 1237, 1330, 1709, 2029, 2543, 2597
BsmAI GTCTC 7 cut(s) 101, 858, 1016, 1565, 1597, 1634, 2112
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 594
BsmI GAATGC 1 cut(s) 1588
BsnI GGCC 9 cut(s) 369, 1186, 1360, 1378, 1411, 1429, 1465, 2251, 2382
Bso31I GGTCTC 2 cut(s) 1597, 2112
Bsp120I GGGCCC 1 cut(s) 1184
Bsp1286I GDGCHC 4 cut(s) 449, 508, 1188, 2334
Bsp19I CCATGG 1 cut(s) 1296
Bsp68I TCGCGA 1 cut(s) 69
BspANI GGCC 9 cut(s) 369, 1186, 1360, 1378, 1411, 1429, 1465, 2251, 2382
BspCNI CTCAG 8 cut(s) 218, 789, 796, 1468, 1570, 2122, 2367, 2545
BspFNI CGCG 5 cut(s) 69, 237, 381, 1372, 1423
BspMAI CTGCAG 3 cut(s) 882, 1801, 2503
BspMI ACCTGC 1 cut(s) 92
BspOI GCTAGC 1 cut(s) 2204
BspPI GGATC 5 cut(s) 23, 250, 1103, 1724, 1765
BspT107I GGYRCC 8 cut(s) 53, 252, 1167, 1240, 1657, 2090, 2289, 2297
BspTNI GGTCTC 2 cut(s) 1597, 2112
BsrDI GCAATG 1 cut(s) 318
BsrFI RCCGGY 3 cut(s) 1314, 2087, 2543
BsrI ACTGG 3 cut(s) 1065, 1102, 1790
BssAI RCCGGY 3 cut(s) 1314, 2087, 2543
BssECI CCNNGG 6 cut(s) 165, 689, 742, 1296, 1875, 2293
BssNI GRCGYC 1 cut(s) 150
BssSI CACGAG 1 cut(s) 257
BssT1I CCWWGG 4 cut(s) 165, 742, 1296, 1875
Bst2BI CACGAG 1 cut(s) 257
Bst2UI CCWGG 6 cut(s) 690, 725, 1245, 1662, 1710, 2336
Bst6I CTCTTC 4 cut(s) 812, 931, 940, 949
BstACI GRCGYC 1 cut(s) 150
BstAPI GCANNNNNTGC 2 cut(s) 53, 1625
BstC8I GCNNGC 8 cut(s) 320, 1316, 1362, 1413, 1467, 2009, 2202, 2400
BstDSI CCRYGG 2 cut(s) 1296, 2293
BstENI CCTNNNNNAGG 1 cut(s) 2595
BstFNI CGCG 5 cut(s) 69, 237, 381, 1372, 1423
BstMAI GTCTC 7 cut(s) 101, 858, 1016, 1565, 1597, 1634, 2112
BstMCI CGRYCG 1 cut(s) 118
BstNI CCWGG 6 cut(s) 690, 725, 1245, 1662, 1710, 2336
BstNSI RCATGY 1 cut(s) 853
BstSCI CCNGG 6 cut(s) 688, 723, 1243, 1660, 1708, 2334
BstSFI CTRYAG 5 cut(s) 878, 1431, 1797, 2245, 2499
BstSLI GKGCMC 1 cut(s) 1188
BstUI CGCG 5 cut(s) 69, 237, 381, 1372, 1423
BstV1I GCAGC 8 cut(s) 113, 859, 1376, 1427, 2389, 2464, 2485, 2513
BstV2I GAAGAC 1 cut(s) 787
BstX2I RGATCY 2 cut(s) 1757, 2512
BstYI RGATCY 2 cut(s) 1757, 2512
BsuI GTATCC 1 cut(s) 1087
BsuRI GGCC 9 cut(s) 369, 1186, 1360, 1378, 1411, 1429, 1465, 2251, 2382
BtgI CCRYGG 2 cut(s) 1296, 2293
BtgZI GCGATG 2 cut(s) 50, 1287
BtrI CACGTC 1 cut(s) 932
BtsIMutI CAGTG 3 cut(s) 1072, 1116, 2122
BtuMI TCGCGA 1 cut(s) 69
BveI ACCTGC 1 cut(s) 92
Cac8I GCNNGC 8 cut(s) 320, 1316, 1362, 1413, 1467, 2009, 2202, 2400
CaiI CAGNNNCTG 3 cut(s) 1151, 1796, 2174
Cfr10I RCCGGY 3 cut(s) 1314, 2087, 2543
Cfr13I GGNCC 9 cut(s) 289, 368, 1184, 1185, 1376, 1427, 1532, 2020, 2380
CseI GACGC 2 cut(s) 76, 365
CspAI ACCGGT 1 cut(s) 2087
CviAII CATG 8 cut(s) 327, 577, 643, 839, 850, 1031, 1297, 1634
DraI TTTAAA 1 cut(s) 1933
DrdI GACNNNNNNGTC 1 cut(s) 1953
DriI GACNNNNNGTC 1 cut(s) 969
DseDI GACNNNNNNGTC 1 cut(s) 1953
EaeI YGGCCR 2 cut(s) 1358, 1409
Eam1104I CTCTTC 4 cut(s) 812, 931, 940, 949
Eam1105I GACNNNNNGTC 1 cut(s) 969
EarI CTCTTC 4 cut(s) 812, 931, 940, 949
EciI GGCGGA 5 cut(s) 728, 824, 957, 1301, 2623
Eco130I CCWWGG 4 cut(s) 165, 742, 1296, 1875
Eco147I AGGCCT 1 cut(s) 2251
Eco24I GRGCYC 1 cut(s) 1188
Eco31I GGTCTC 2 cut(s) 1597, 2112
Eco32I GATATC 2 cut(s) 902, 2166
Eco47I GGWCC 3 cut(s) 289, 1532, 2020
Eco57I CTGAAG 3 cut(s) 428, 561, 880
EcoNI CCTNNNNNAGG 1 cut(s) 2595
EcoO109I RGGNCCY 1 cut(s) 1184
EcoRII CCWGG 6 cut(s) 688, 723, 1243, 1660, 1708, 2334
EcoRV GATATC 2 cut(s) 902, 2166
EcoT14I CCWWGG 4 cut(s) 165, 742, 1296, 1875
EcoT38I GRGCYC 1 cut(s) 1188
ErhI CCWWGG 4 cut(s) 165, 742, 1296, 1875
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 8 cut(s) 330, 580, 646, 842, 853, 1034, 1300, 1637
FaqI GGGAC 1 cut(s) 594
FatI CATG 8 cut(s) 326, 576, 642, 838, 849, 1030, 1296, 1633
FauI CCCGC 2 cut(s) 374, 2102
FauNDI CATATG 1 cut(s) 1675
FbaI TGATCA 3 cut(s) 303, 400, 652
FriOI GRGCYC 1 cut(s) 1188
GsaI CCCAGC 1 cut(s) 1834
GsuI CTGGAG 5 cut(s) 746, 1048, 1065, 1773, 2601
HaeIII GGCC 9 cut(s) 369, 1186, 1360, 1378, 1411, 1429, 1465, 2251, 2382
HapII CCGG 3 cut(s) 1315, 2088, 2544
HgaI GACGC 2 cut(s) 76, 365
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 8 cut(s) 330, 580, 646, 842, 853, 1034, 1300, 1637
HincII GTYRAC 4 cut(s) 1491, 1969, 2277, 2360
HindII GTYRAC 4 cut(s) 1491, 1969, 2277, 2360
HindIII AAGCTT 1 cut(s) 320
HpaII CCGG 3 cut(s) 1315, 2088, 2544
HphI GGTGA 4 cut(s) 154, 545, 2504, 2558
Hpy166II GTNNAC 7 cut(s) 62, 485, 917, 1491, 1969, 2277, 2360
Hpy8I GTNNAC 7 cut(s) 62, 485, 917, 1491, 1969, 2277, 2360
Hpy99I CGWCG 5 cut(s) 92, 155, 381, 933, 1612
HpyAV CCTTC 5 cut(s) 455, 463, 1065, 1779, 2546
HpyCH4IV ACGT 3 cut(s) 150, 931, 1730
HpySE526I ACGT 3 cut(s) 150, 931, 1730
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 8 cut(s) 330, 580, 646, 842, 853, 1034, 1300, 1637
KpnI GGTACC 5 cut(s) 256, 1171, 1661, 2094, 2293
KroI GCCGGC 1 cut(s) 1314
KroNI GCCGGC 1 cut(s) 1316
Ksp22I TGATCA 3 cut(s) 303, 400, 652
LmnI GCTCC 2 cut(s) 83, 1741
Lsp1109I GCAGC 8 cut(s) 113, 859, 1376, 1427, 2389, 2464, 2485, 2513
LweI GCATC 9 cut(s) 113, 138, 720, 1138, 1310, 1315, 2065, 2485, 2530
MaeII ACGT 3 cut(s) 150, 931, 1730
MaeIII GTNAC 2 cut(s) 338, 2570
MfeI CAATTG 1 cut(s) 509
MflI RGATCY 2 cut(s) 1757, 2512
MhlI GDGCHC 4 cut(s) 449, 508, 1188, 2334
MlsI TGGCCA 2 cut(s) 1360, 1411
MluI ACGCGT 2 cut(s) 1370, 1421
MluNI TGGCCA 2 cut(s) 1360, 1411
MlyI GAGTC 4 cut(s) 152, 776, 2031, 2490
MmeI TCCRAC 2 cut(s) 126, 941
Mox20I TGGCCA 2 cut(s) 1360, 1411
MroNI GCCGGC 1 cut(s) 1314
MroXI GAANNNNTTC 1 cut(s) 1887
MscI TGGCCA 2 cut(s) 1360, 1411
MseI TTAA 6 cut(s) 195, 1136, 1338, 1932, 2345, 2558
MslI CAYNNNNRTG 1 cut(s) 930
Msp20I TGGCCA 2 cut(s) 1360, 1411
MspA1I CMGCKG 2 cut(s) 2402, 2455
MspI CCGG 3 cut(s) 1315, 2088, 2544
MspR9I CCNGG 6 cut(s) 690, 725, 1245, 1662, 1710, 2336
MunI CAATTG 1 cut(s) 509
Mva1269I GAATGC 1 cut(s) 1588
MvaI CCWGG 6 cut(s) 690, 725, 1245, 1662, 1710, 2336
MvnI CGCG 5 cut(s) 69, 237, 381, 1372, 1423
NaeI GCCGGC 1 cut(s) 1316
NcoI CCATGG 1 cut(s) 1296
NdeI CATATG 1 cut(s) 1675
NgoMIV GCCGGC 1 cut(s) 1314
NheI GCTAGC 1 cut(s) 2200
NlaIII CATG 8 cut(s) 330, 580, 646, 842, 853, 1034, 1300, 1637
NmeAIII GCCGAG 1 cut(s) 2555
NmuCI GTSAC 1 cut(s) 338
NruI TCGCGA 1 cut(s) 69
NspI RCATGY 1 cut(s) 853
PaqCI CACCTGC 1 cut(s) 92
PceI AGGCCT 1 cut(s) 2251
PcsI WCGNNNNNNNCGW 3 cut(s) 853, 862, 967
PctI GAATGC 1 cut(s) 1588
PdiI GCCGGC 1 cut(s) 1316
PdmI GAANNNNTTC 1 cut(s) 1887
PflFI GACNNNGTC 1 cut(s) 142
PflMI CCANNNNNTGG 1 cut(s) 1330
PinAI ACCGGT 1 cut(s) 2087
Ple19I CGATCG 1 cut(s) 118
PleI GAGTC 4 cut(s) 151, 775, 2031, 2489
PpsI GAGTC 4 cut(s) 151, 775, 2031, 2489
PshBI ATTAAT 1 cut(s) 195
PsiI TTATAA 1 cut(s) 708
Psp6I CCWGG 6 cut(s) 688, 723, 1243, 1660, 1708, 2334
PspFI CCCAGC 1 cut(s) 1830
PspGI CCWGG 6 cut(s) 688, 723, 1243, 1660, 1708, 2334
PspOMI GGGCCC 1 cut(s) 1184
PspPI GGNCC 9 cut(s) 289, 368, 1184, 1185, 1376, 1427, 1532, 2020, 2380
PstI CTGCAG 3 cut(s) 882, 1801, 2503
PstNI CAGNNNCTG 3 cut(s) 1151, 1796, 2174
PsuI RGATCY 2 cut(s) 1757, 2512
PsyI GACNNNGTC 1 cut(s) 142
PvuI CGATCG 1 cut(s) 118
PvuII CAGCTG 1 cut(s) 2402
RruI TCGCGA 1 cut(s) 69
RseI CAYNNNNRTG 1 cut(s) 930
SaqAI TTAA 6 cut(s) 195, 1136, 1338, 1932, 2345, 2558
Sau96I GGNCC 9 cut(s) 289, 368, 1184, 1185, 1376, 1427, 1532, 2020, 2380
SchI GAGTC 4 cut(s) 152, 776, 2031, 2490
ScrFI CCNGG 6 cut(s) 690, 725, 1245, 1662, 1710, 2336
SduI GDGCHC 4 cut(s) 449, 508, 1188, 2334
SfaNI GCATC 9 cut(s) 113, 138, 720, 1138, 1310, 1315, 2065, 2485, 2530
SfcI CTRYAG 5 cut(s) 878, 1431, 1797, 2245, 2499
SinI GGWCC 3 cut(s) 289, 1532, 2020
SmiMI CAYNNNNRTG 1 cut(s) 930
SmlI CTYRAG 2 cut(s) 267, 1563
SmoI CTYRAG 2 cut(s) 267, 1563
SseBI AGGCCT 1 cut(s) 2251
SspI AATATT 1 cut(s) 704
StuI AGGCCT 1 cut(s) 2251
StyD4I CCNGG 6 cut(s) 688, 723, 1243, 1660, 1708, 2334
StyI CCWWGG 4 cut(s) 165, 742, 1296, 1875
TaiI ACGT 3 cut(s) 153, 934, 1733
TaqI TCGA 6 cut(s) 36, 928, 1610, 1685, 1749, 1891
TaqII GACCGA 1 cut(s) 155
TatI WGTACW 5 cut(s) 633, 1139, 1435, 1801, 2368
TauI GCSGC 2 cut(s) 1631, 1999
Tru1I TTAA 6 cut(s) 195, 1136, 1338, 1932, 2345, 2558
Tru9I TTAA 6 cut(s) 195, 1136, 1338, 1932, 2345, 2558
TscAI CASTG 3 cut(s) 1072, 1123, 2122
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 8 cut(s) 126, 872, 1364, 1415, 2402, 2452, 2498, 2501
Tsp45I GTSAC 1 cut(s) 338
TspGWI ACGGA 3 cut(s) 922, 1474, 2115
TspRI CASTG 3 cut(s) 1072, 1123, 2122
Tth111I GACNNNGTC 1 cut(s) 142
Van91I CCANNNNNTGG 1 cut(s) 1330
VpaK11BI GGWCC 3 cut(s) 289, 1532, 2020
VspI ATTAAT 1 cut(s) 195
XagI CCTNNNNNAGG 1 cut(s) 2595
XapI RAATTY 7 cut(s) 596, 1904, 1977, 2347, 2422, 2471, 2521
XbaI TCTAGA 1 cut(s) 1984
XceI RCATGY 1 cut(s) 853
XmnI GAANNNNTTC 1 cut(s) 1887
ZraI GACGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.