Rw3G007330

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000854
Physical Location & Seq
Forward (+)
6779068 .. 6782761
3694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G007330.1

Sequence Viewer

Length: 2475 bp
ATGGACGATAGCTGTGCTGTCTGTGCAGAGACACTTCAATGGGTCGCATATGGTCCCTGTGGCCATCGAGAGGTCTGCTCCACCTGCACTATTCGCCTCCGTTTCATCTGTGGAGATTCCCATTGCTGCCTCTGCAAGAGTGAATCTAAGATCATCTTTGTCACCAAGGCGTTAGGCGACTATACAAGGATGATAAATGATTTTTCTGTTTTGCCAACTCCTCTAATGGAGGGTCAACTTGGACCATACTGGTACCATGAAGGAACACAAGCCTTTTTTGATGATGTTGATCACTACAAGATGATAAAGACCATGTGCAGGCTATCCTGTAGTCTTTGTAATAAGATTAATGAACAAAGGAGTGAGGGGTTGAAGAAAAAAGGGGAATTTAAAAATGTTGAGCAGCTGAAAAGTCATTTGTTTCATCGGCATAGGCTGTTTATGTGCAGTCTATGCTTGGAGGGAAGGAAGATATTTATCTGTGAGCAAAAGTTATATACTAAAGCACAATTGGATCGGCATACAGAGACAGGTGATTCAGAGGTAGATGGCAGTGAGAGTGAAAGAGGTGGGTTTAATGGACACCCTATGTGTGAGTTTTGCAAGAATCCATTTTATGGAGATAATGAGCTGTACATGCATATGTCTACCGAGCATTTTACTTGTCATATATGCCAAAGGCAGCGTCCAGGACAGTATGAATACTACAGTAACTATGACAACTTGGAGATTCATTTTCAACAAGCGCACTTCTTATGCAAGGATGATGCCTGCCTAACGAAAAAATTTGTTGTTTTTGCAACTGAATCTGAAATGAAGAGGCATAATGCCAAAGAACATGGAGGGAACATGTCTCGCTCCCGGCGTAATGCTGCTCTTCAGATACCAATAAGCTTCCGGTGTAGGAGAAGTAATGAGGAAGATCATCATGGACCCCATAGTGGAGGACATGTTTCTGATGTTGATGCTGAAGATAATCGACTTTTCCTGACTGTTCAAGCTAGTGTTGATACAGCCAATGCAGAAAGGTTTCGTAATACATCCTCTAGTGTCCAAGCAGTTTTTGATCGTCGAAGAGCAAGTGACTCTGTGATTATTGCTGGCCGTTTTGAGTCATTAGCTACTACAGAAACTGAGTCATCTGTAAGATGCTCTAATGCATCAAGAGAAAACTCTCGTAATGTACTAGCAGAAGAATCAGCCTTCCCTCCACTTCCTCTGGCTCAAAGTAGCAGGCGACAGAAGTTTAGAAATGGTTCCGAACGGATGGATGGTAGCACAATGGCATCTCGAGTTCGTCGCCTTAATACCGTAAATGTCCTTAATTCTTCTTCAGCTTGGCCAACAGCCAGGCGTCAACCTAAATCATCTGCCAGTAGTTCTCACCAGTTATCATCATCTAGTTCTTCTGTATTTTCCCAGAGTAATACTGCAACTATTAATAGGACTATGCCTTCTGGATATGCAAGCTCTGGTCCAGTGAGACAAGCTGCAGCTAATGGTTTTGTATCATCCAATTTTCTTAGCACAGGGAAGTCACCTAGCACTAGTAAGGTTGGCCACTCTACTTCAGCTCCAAGCCTTGTTGAGAGAGGATCTATAGACTCTGATTTTCCTACTGTATCTGCTACTCAAACTAATAGAGAACCTGCAAATAGTCAGACAATAATACCCAAGGTCGGAGATGTTCAGACTGCCAACAAGTCCCTTGTAGAAAAAATCCGTGATGCTTTAGAATTTGATGAGAGCAAATTCACCGCATTTAAAGAAATATCTGGAAAGTACCGCAAGGATCTAATCAACACCGGGGAATATCTGGCCTGTGTGGACCATTTTGGCCTGTCACACTTGGTTCTTGAGCTAGCTCAACTGTGTCCTGATGCTGAGAAGCGAAGAGAGCTTGTTGAGACTTACAATTTCAATATGAAGAGCAGTCGTTCTCATGGAATCAATTTGAGTATTGGTGGTGGCAAGTCAAAGAGCAGTTCCAAGAAAGGCAAGGAAAAATGTGTAGATAATGGGATCAGTAGTTCAAAAGATGCTTTGAAGTTGAATTGTAAACCTCCTGTCGAAGATGCAGCGGTCGTATTGAAGAATGATCATTGCTGCAGCAAAGGAAAGTCAAAAATATCAGTTGAGGATGAACAGATCAACCTGGATTCTGGGAATCATATGCCGATGGGTCAGAATGGTTCTCAGTCAGCTGGTGGCAGCTCAAAGAAAAATTTGGGGAAAGGAGCTAATAAGCAACAAAAGAAGGTTCCCAAGTTTCTTAGAAACCGTCTTGGTGATGATGCTGTAGCACTTGCAGAACTTGGTGATGCTGAAACCGGTCCTGACCTGATTGAAGAAAAAACAGATACAGACAAGGATCCCCCCGAAGGGTTGCCAGTTCGTGGTGTTTGGCAAAATGGAGGTGGCCATAGACTTGTGAAATTGACCATGAGAAACCCTCCAAAACGAGGAGTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

824

Amino Acids

91.28

Weight (kDa)

8.65

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RING_ZNF598 PF25447 2 - 57 1.5e-06 ZNF598 RING finger domain
zf-C2H2_13 PF23230 219 - 275 1.2e-15 C2H2-type zinc finger
PAH_ZNF598 PF23202 564 - 639 2.1e-21 ZNF598 PAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 92
Acc36I ACCTGC 2 cut(s) 92, 1657
Acc65I GGTACC 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 252
AccB7I CCANNNNNTGG 2 cut(s) 617, 2396
AccI GTMKAC 1 cut(s) 647
AciI CCGC 3 cut(s) 1758, 1786, 2081
AclWI GGATC 6 cut(s) 522, 1603, 1800, 2030, 2366, 2379
AcoI YGGCCR 5 cut(s) 61, 1102, 1340, 1558, 2419
AcsI RAATTY 5 cut(s) 386, 785, 1736, 1751, 2224
AcuI CTGAAG 4 cut(s) 863, 990, 1317, 1554
AcyI GRCGYC 1 cut(s) 1354
AfaI GTAC 4 cut(s) 254, 635, 1185, 1784
AfiI CCNNNNNNNGG 9 cut(s) 70, 318, 617, 941, 1679, 2381, 2382, 2396, 2462
AflIII ACRYGT 2 cut(s) 849, 949
AgeI ACCGGT 1 cut(s) 2330
AhlI ACTAGT 1 cut(s) 1547
AjnI CCWGG 3 cut(s) 688, 1349, 2154
AloI GAACNNNNNNTCC 2 cut(s) 2014, 2046
Alw26I GTCTC 5 cut(s) 23, 521, 858, 1477, 1901
AlwI GGATC 6 cut(s) 522, 1603, 1800, 2030, 2366, 2379
AlwNI CAGNNNCTG 1 cut(s) 1133
Ama87I CYCGRG 1 cut(s) 1290
AoxI GGCC 7 cut(s) 61, 1102, 1340, 1558, 1818, 1837, 2419
ApoI RAATTY 5 cut(s) 386, 785, 1736, 1751, 2224
ArsI GACNNNNNNTTYG 2 cut(s) 670, 702
AseI ATTAAT 2 cut(s) 348, 1440
AsiGI ACCGGT 1 cut(s) 2330
Asp700I GAANNNNTTC 2 cut(s) 1029, 1255
Asp718I GGTACC 1 cut(s) 252
AspLEI GCGC 1 cut(s) 748
AspS9I GGNCC 6 cut(s) 53, 242, 932, 1475, 1828, 2333
AsuC2I CCSGG 2 cut(s) 862, 1807
AsuHPI GGTGA 7 cut(s) 154, 545, 1376, 1530, 1747, 2300, 2330
AsuNHI GCTAGC 1 cut(s) 1861
AvaI CYCGRG 1 cut(s) 1290
AvaII GGWCC 6 cut(s) 53, 242, 932, 1475, 1828, 2333
BalI TGGCCA 4 cut(s) 63, 1342, 1560, 2421
BamHI GGATCC 1 cut(s) 2371
BanI GGYRCC 1 cut(s) 252
BccI CCATC 5 cut(s) 72, 542, 1261, 1265, 2173
BceAI ACGGC 1 cut(s) 1089
BcgI CGANNNNNNTGC 3 cut(s) 30, 57, 91
BciT130I CCWGG 3 cut(s) 690, 1351, 2156
BclI TGATCA 2 cut(s) 289, 2098
BcnI CCSGG 2 cut(s) 862, 1807
BcoDI GTCTC 5 cut(s) 23, 521, 858, 1477, 1901
BcuI ACTAGT 1 cut(s) 1547
BfaI CTAG 7 cut(s) 1002, 1047, 1187, 1401, 1542, 1548, 1862
BfmI CTRYAG 7 cut(s) 328, 706, 1125, 1491, 1599, 2107, 2298
BfuAI ACCTGC 2 cut(s) 92, 1657
Bme1390I CCNGG 5 cut(s) 690, 862, 1351, 1807, 2156
Bme18I GGWCC 6 cut(s) 53, 242, 932, 1475, 1828, 2333
BmeT110I CYCGRG 1 cut(s) 1290
BmgT120I GGNCC 6 cut(s) 53, 242, 932, 1475, 1828, 2333
BmiI GGNNCC 6 cut(s) 55, 254, 934, 1258, 2262, 2373
BmrFI CCNGG 5 cut(s) 690, 862, 1351, 1807, 2156
BmtI GCTAGC 1 cut(s) 1865
BplI GAGNNNNNCTC 4 cut(s) 62, 94, 2437, 2469
BpuEI CTTGAG 1 cut(s) 1877
BpuMI CCSGG 2 cut(s) 862, 1807
BsaBI GATNNNNATC 2 cut(s) 288, 476
BsaHI GRCGYC 1 cut(s) 1354
BsaJI CCNNGG 3 cut(s) 165, 1674, 1806
BsaWI WCCGGW 2 cut(s) 897, 2330
BsaXI ACNNNNNCTCC 4 cut(s) 936, 966, 1558, 1588
Bsc4I CCNNNNNNNGG 9 cut(s) 70, 318, 617, 941, 1679, 2381, 2382, 2396, 2462
Bse118I RCCGGY 1 cut(s) 2330
Bse1I ACTGG 5 cut(s) 254, 1374, 1387, 1478, 2390
Bse3DI GCAATG 2 cut(s) 121, 2101
Bse8I GATNNNNATC 2 cut(s) 288, 476
BseBI CCWGG 3 cut(s) 690, 1351, 2156
BseDI CCNNGG 3 cut(s) 165, 1674, 1806
BseGI GGATG 7 cut(s) 195, 769, 1040, 1272, 1276, 1511, 2146
BseJI GATNNNNATC 2 cut(s) 288, 476
BseLI CCNNNNNNNGG 9 cut(s) 70, 318, 617, 941, 1679, 2381, 2382, 2396, 2462
BseMI GCAATG 2 cut(s) 121, 2101
BseMII CTCAG 3 cut(s) 1125, 1875, 2210
BseNI ACTGG 5 cut(s) 254, 1374, 1387, 1478, 2390
BseRI GAGGAG 1 cut(s) 210
BsgI GTGCAG 4 cut(s) 45, 70, 337, 466
Bsh1285I CGRYCG 1 cut(s) 2085
BshFI GGCC 7 cut(s) 63, 1104, 1342, 1560, 1820, 1839, 2421
BshNI GGYRCC 1 cut(s) 252
BshTI ACCGGT 1 cut(s) 2330
BsiEI CGRYCG 1 cut(s) 2085
BsiHKCI CYCGRG 1 cut(s) 1290
BsiSI CCGG 4 cut(s) 862, 898, 1806, 2331
BslFI GGGAC 2 cut(s) 39, 1690
BslI CCNNNNNNNGG 9 cut(s) 70, 318, 617, 941, 1679, 2381, 2382, 2396, 2462
BsmAI GTCTC 5 cut(s) 23, 521, 858, 1477, 1901
BsmFI GGGAC 2 cut(s) 39, 1690
BsnI GGCC 7 cut(s) 63, 1104, 1342, 1560, 1820, 1839, 2421
BsoBI CYCGRG 1 cut(s) 1290
Bsp1407I TGTACA 1 cut(s) 633
BspACI CCGC 3 cut(s) 1758, 1786, 2081
BspANI GGCC 7 cut(s) 63, 1104, 1342, 1560, 1820, 1839, 2421
BspCNI CTCAG 3 cut(s) 1126, 1876, 2209
BspLI GGNNCC 6 cut(s) 55, 254, 934, 1258, 2262, 2373
BspMAI CTGCAG 2 cut(s) 1495, 2111
BspMI ACCTGC 2 cut(s) 92, 1657
BspOI GCTAGC 1 cut(s) 1865
BspPI GGATC 6 cut(s) 522, 1603, 1800, 2030, 2366, 2379
BspQI GCTCTTC 3 cut(s) 882, 1069, 1922
BspT107I GGYRCC 1 cut(s) 252
BsrDI GCAATG 2 cut(s) 121, 2101
BsrFI RCCGGY 1 cut(s) 2330
BsrGI TGTACA 1 cut(s) 633
BsrI ACTGG 5 cut(s) 254, 1374, 1387, 1478, 2390
BssAI RCCGGY 1 cut(s) 2330
BssECI CCNNGG 3 cut(s) 165, 1674, 1806
BssNI GRCGYC 1 cut(s) 1354
BssT1I CCWWGG 2 cut(s) 165, 1674
Bst2UI CCWGG 3 cut(s) 690, 1351, 2156
Bst4CI ACNGT 7 cut(s) 696, 710, 994, 1312, 1621, 1872, 2282
Bst6I CTCTTC 5 cut(s) 812, 882, 1069, 1888, 1922
BstACI GRCGYC 1 cut(s) 1354
BstAPI GCANNNNNTGC 1 cut(s) 453
BstAUI TGTACA 1 cut(s) 633
BstC8I GCNNGC 6 cut(s) 320, 772, 1102, 1235, 1468, 1863
BstDEI CTNAG 6 cut(s) 147, 1134, 1523, 1884, 2196, 2273
BstF5I GGATG 7 cut(s) 195, 769, 1040, 1272, 1276, 1511, 2146
BstHHI GCGC 1 cut(s) 748
BstMAI GTCTC 5 cut(s) 23, 521, 858, 1477, 1901
BstMCI CGRYCG 1 cut(s) 2085
BstMWI GCNNNNNNNGC 7 cut(s) 23, 84, 93, 132, 453, 637, 1897
BstNI CCWGG 3 cut(s) 690, 1351, 2156
BstNSI RCATGY 3 cut(s) 640, 853, 953
BstSCI CCNGG 5 cut(s) 688, 860, 1349, 1805, 2154
BstSFI CTRYAG 7 cut(s) 328, 706, 1125, 1491, 1599, 2107, 2298
BstX2I RGATCY 3 cut(s) 1595, 1792, 2371
BstYI RGATCY 3 cut(s) 1595, 1792, 2371
BsuRI GGCC 7 cut(s) 63, 1104, 1342, 1560, 1820, 1839, 2421
BtsCI GGATG 7 cut(s) 195, 769, 1040, 1272, 1276, 1511, 2146
BtsI GCAGTG 1 cut(s) 559
BtsIMutI CAGTG 2 cut(s) 559, 1485
BveI ACCTGC 2 cut(s) 92, 1657
Cac8I GCNNGC 6 cut(s) 320, 772, 1102, 1235, 1468, 1863
CaiI CAGNNNCTG 1 cut(s) 1133
CfoI GCGC 1 cut(s) 748
Cfr10I RCCGGY 1 cut(s) 2330
Cfr13I GGNCC 6 cut(s) 53, 242, 932, 1475, 1828, 2333
CseI GACGC 2 cut(s) 674, 1343
Csp6I GTAC 4 cut(s) 253, 634, 1184, 1783
CspAI ACCGGT 1 cut(s) 2330
CviAII CATG 9 cut(s) 257, 313, 637, 839, 850, 929, 950, 1943, 2443
CviQI GTAC 4 cut(s) 253, 634, 1184, 1783
DdeI CTNAG 6 cut(s) 147, 1134, 1523, 1884, 2196, 2273
DraI TTTAAA 2 cut(s) 391, 1765
EaeI YGGCCR 5 cut(s) 61, 1102, 1340, 1558, 2419
Eam1104I CTCTTC 5 cut(s) 812, 882, 1069, 1888, 1922
EarI CTCTTC 5 cut(s) 812, 882, 1069, 1888, 1922
Eco130I CCWWGG 2 cut(s) 165, 1674
Eco47I GGWCC 6 cut(s) 53, 242, 932, 1475, 1828, 2333
Eco57I CTGAAG 4 cut(s) 863, 990, 1317, 1554
Eco88I CYCGRG 1 cut(s) 1290
EcoRII CCWGG 3 cut(s) 688, 1349, 2154
EcoT14I CCWWGG 2 cut(s) 165, 1674
EcoT22I ATGCAT 2 cut(s) 642, 1162
ErhI CCWWGG 2 cut(s) 165, 1674
FaeI CATG 9 cut(s) 260, 316, 640, 842, 853, 932, 953, 1946, 2446
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FaqI GGGAC 2 cut(s) 39, 1690
FatI CATG 9 cut(s) 256, 312, 636, 838, 849, 928, 949, 1942, 2442
FauNDI CATATG 3 cut(s) 49, 642, 2172
FbaI TGATCA 2 cut(s) 289, 2098
FblI GTMKAC 1 cut(s) 647
FokI GGATG 7 cut(s) 202, 776, 1027, 1279, 1283, 1498, 2153
FspBI CTAG 7 cut(s) 1002, 1047, 1187, 1401, 1542, 1548, 1862
GlaI GCGC 1 cut(s) 747
HaeIII GGCC 7 cut(s) 63, 1104, 1342, 1560, 1820, 1839, 2421
HapII CCGG 4 cut(s) 862, 898, 1806, 2331
HgaI GACGC 2 cut(s) 674, 1343
HhaI GCGC 1 cut(s) 748
Hin1I GRCGYC 1 cut(s) 1354
Hin1II CATG 9 cut(s) 260, 316, 640, 842, 853, 932, 953, 1946, 2446
Hin6I GCGC 1 cut(s) 746
HinP1I GCGC 1 cut(s) 746
HincII GTYRAC 2 cut(s) 236, 1358
HindII GTYRAC 2 cut(s) 236, 1358
HindIII AAGCTT 1 cut(s) 892
HpaII CCGG 4 cut(s) 862, 898, 1806, 2331
HphI GGTGA 7 cut(s) 154, 545, 1376, 1530, 1747, 2300, 2330
Hpy166II GTNNAC 5 cut(s) 236, 648, 1358, 1828, 2060
Hpy188III TCNNGA 9 cut(s) 68, 988, 1164, 1290, 1458, 1776, 1856, 1877, 2336
Hpy8I GTNNAC 5 cut(s) 236, 648, 1358, 1828, 2060
Hpy99I CGWCG 2 cut(s) 1074, 1302
HpyAV CCTTC 6 cut(s) 254, 459, 1213, 1464, 2251, 2375
HpyCH4III ACNGT 7 cut(s) 696, 710, 994, 1312, 1621, 1872, 2282
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 84, 93, 132, 453, 637, 1897
HpyF3I CTNAG 6 cut(s) 147, 1134, 1523, 1884, 2196, 2273
Hsp92I GRCGYC 1 cut(s) 1354
Hsp92II CATG 9 cut(s) 260, 316, 640, 842, 853, 932, 953, 1946, 2446
HspAI GCGC 1 cut(s) 746
KpnI GGTACC 1 cut(s) 256
Ksp22I TGATCA 2 cut(s) 289, 2098
LguI GCTCTTC 3 cut(s) 882, 1069, 1922
LmnI GCTCC 4 cut(s) 83, 863, 1579, 2237
MaeI CTAG 7 cut(s) 1002, 1047, 1187, 1401, 1542, 1548, 1862
MaeIII GTNAC 5 cut(s) 160, 710, 1082, 1536, 1842
MfeI CAATTG 1 cut(s) 509
MflI RGATCY 3 cut(s) 1595, 1792, 2371
MlsI TGGCCA 4 cut(s) 63, 1342, 1560, 2421
MluNI TGGCCA 4 cut(s) 63, 1342, 1560, 2421
MlyI GAGTC 4 cut(s) 1079, 1121, 1145, 1598
MmeI TCCRAC 1 cut(s) 1660
Mox20I TGGCCA 4 cut(s) 63, 1342, 1560, 2421
Mph1103I ATGCAT 2 cut(s) 642, 1162
MroXI GAANNNNTTC 2 cut(s) 1029, 1255
MscI TGGCCA 4 cut(s) 63, 1342, 1560, 2421
MseI TTAA 7 cut(s) 348, 390, 576, 1305, 1323, 1440, 1764
MslI CAYNNNNRTG 2 cut(s) 37, 641
Msp20I TGGCCA 4 cut(s) 63, 1342, 1560, 2421
MspA1I CMGCKG 3 cut(s) 406, 2081, 2204
MspI CCGG 4 cut(s) 862, 898, 1806, 2331
MspR9I CCNGG 5 cut(s) 690, 862, 1351, 1807, 2156
MunI CAATTG 1 cut(s) 509
MvaI CCWGG 3 cut(s) 690, 1351, 2156
MwoI GCNNNNNNNGC 7 cut(s) 23, 84, 93, 132, 453, 637, 1897
NciI CCSGG 2 cut(s) 862, 1807
NdeI CATATG 3 cut(s) 49, 642, 2172
NheI GCTAGC 1 cut(s) 1861
NlaIII CATG 9 cut(s) 260, 316, 640, 842, 853, 932, 953, 1946, 2446
NlaIV GGNNCC 6 cut(s) 55, 254, 934, 1258, 2262, 2373
NmuCI GTSAC 4 cut(s) 160, 1082, 1536, 1842
NsiI ATGCAT 2 cut(s) 642, 1162
NspI RCATGY 3 cut(s) 640, 853, 953
PaeR7I CTCGAG 1 cut(s) 1290
PaqCI CACCTGC 1 cut(s) 92
PciI ACATGT 2 cut(s) 849, 949
PciSI GCTCTTC 3 cut(s) 882, 1069, 1922
PcsI WCGNNNNNNNCGW 1 cut(s) 862
PdmI GAANNNNTTC 2 cut(s) 1029, 1255
PflMI CCANNNNNTGG 2 cut(s) 617, 2396
PfoI TCCNGGA 1 cut(s) 688
PinAI ACCGGT 1 cut(s) 2330
PleI GAGTC 4 cut(s) 1079, 1120, 1144, 1598
PpsI GAGTC 4 cut(s) 1079, 1120, 1144, 1598
PscI ACATGT 2 cut(s) 849, 949
PshBI ATTAAT 2 cut(s) 348, 1440
Psp6I CCWGG 3 cut(s) 688, 1349, 2154
PspGI CCWGG 3 cut(s) 688, 1349, 2154
PspN4I GGNNCC 6 cut(s) 55, 254, 934, 1258, 2262, 2373
PspPI GGNCC 6 cut(s) 53, 242, 932, 1475, 1828, 2333
PstI CTGCAG 2 cut(s) 1495, 2111
PstNI CAGNNNCTG 1 cut(s) 1133
PsuI RGATCY 3 cut(s) 1595, 1792, 2371
PvuII CAGCTG 2 cut(s) 406, 2204
RsaI GTAC 4 cut(s) 254, 635, 1185, 1784
RsaNI GTAC 4 cut(s) 253, 634, 1184, 1783
RseI CAYNNNNRTG 2 cut(s) 37, 641
SapI GCTCTTC 3 cut(s) 882, 1069, 1922
SaqAI TTAA 7 cut(s) 348, 390, 576, 1305, 1323, 1440, 1764
Sau96I GGNCC 6 cut(s) 53, 242, 932, 1475, 1828, 2333
SchI GAGTC 4 cut(s) 1079, 1121, 1145, 1598
ScrFI CCNGG 5 cut(s) 690, 862, 1351, 1807, 2156
SfcI CTRYAG 7 cut(s) 328, 706, 1125, 1491, 1599, 2107, 2298
Sfr274I CTCGAG 1 cut(s) 1290
SinI GGWCC 6 cut(s) 53, 242, 932, 1475, 1828, 2333
SlaI CTCGAG 1 cut(s) 1290
SmiMI CAYNNNNRTG 2 cut(s) 37, 641
SmlI CTYRAG 2 cut(s) 1290, 1856
SmoI CTYRAG 2 cut(s) 1290, 1856
SpeI ACTAGT 1 cut(s) 1547
SsiI CCGC 3 cut(s) 1758, 1786, 2081
SspMI CTAG 7 cut(s) 1002, 1047, 1187, 1401, 1542, 1548, 1862
StyD4I CCNGG 5 cut(s) 688, 860, 1349, 1805, 2154
StyI CCWWGG 2 cut(s) 165, 1674
TaaI ACNGT 7 cut(s) 696, 710, 994, 1312, 1621, 1872, 2282
TaqI TCGA 5 cut(s) 67, 979, 1072, 1291, 2070
TatI WGTACW 2 cut(s) 633, 1183
Tru1I TTAA 7 cut(s) 348, 390, 576, 1305, 1323, 1440, 1764
Tru9I TTAA 7 cut(s) 348, 390, 576, 1305, 1323, 1440, 1764
TscAI CASTG 2 cut(s) 559, 1485
TseFI GTSAC 4 cut(s) 160, 1082, 1536, 1842
Tsp45I GTSAC 4 cut(s) 160, 1082, 1536, 1842
TspDTI ATGAA 9 cut(s) 94, 273, 366, 413, 714, 722, 830, 1940, 2157
TspGWI ACGGA 3 cut(s) 89, 1279, 1712
TspRI CASTG 2 cut(s) 559, 1485
Van91I CCANNNNNTGG 2 cut(s) 617, 2396
VpaK11BI GGWCC 6 cut(s) 53, 242, 932, 1475, 1828, 2333
VspI ATTAAT 2 cut(s) 348, 1440
XapI RAATTY 5 cut(s) 386, 785, 1736, 1751, 2224
XceI RCATGY 3 cut(s) 640, 853, 953
XhoI CTCGAG 1 cut(s) 1290
XmiI GTMKAC 1 cut(s) 647
XmnI GAANNNNTTC 2 cut(s) 1029, 1255
XspI CTAG 7 cut(s) 1002, 1047, 1187, 1401, 1542, 1548, 1862
Zsp2I ATGCAT 2 cut(s) 642, 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.