Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000795.1

Orthogroup ID

OG0000854

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1282

Gene Structure 1282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000795.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 646 bp

atggacgatagctgtgccgtgtgcgccgactccctcgaatgggttgcctacggcgcttgcggccacaaggaggtctgctccacctgcgtcgcccgcctccgtttcatctgcgacgatcgccgctgctgcatctgcaagaccgactgcgacgtcgttttcgtcaccaaggctttaggagactatacaaagatgattaaggacttctcggtcttgccatcccaagggagggagggtcgcttgggaccatactggtaccatgaagacacacaagcatttttcgatgatgtggatcactacaagatgatcaaggcaatgtgcaagctttcctgcagtgaatgtgacaagctggaagagcaatcaattgataactcaaggcgtcgcccgaggtttcggaacattgaacagcttaagggccatttataccaccaacataggttgtttatgtgccctctatgtttggaagcgaggaaggtatttatttgtgaacaaaagctatatagtaaagcacagttgaagcagcatataggtacaggtgactctgaagttgatggaagtgaaagtgaaagagggggctttatggggcatcctatgtgtgaattctgcagaactccattctatggcgataatgaactatacgcccacatgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

24.83

Weight (kDa)

6.14

Isoelectric Point (pI)

55.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47090 AT2G47090 AT2G47090 AT2G47090 AT2G47090 AT3G62240
fragaria_vesca	FvH4_3g07600 FvH4_6g08350 FvH4_6g08350 FvH4_6g08350 FvH4_6g08350 FvH4_7g03760 FvH4_7g03760 FvH4_7g03760
malus_domestica	MD02G1277600.v1.1 MD04G1187900.v1.1 MD07G1045700.v1.1
prunus_persica	Prupe.2G042900_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1
pyrus_communis	pycom02g23760 pycom02g23770 pycom04g16610 pycom04g16640 pycom07g03260 pycom07g03270
rosa_chinensis	RchiOBHm_Chr1g0326951 RchiOBHm_Chr3g0458251 RchiOBHm_Chr5g0011091
rosa_laevigata	RLG00000025171 RLG00000030049 RLG00000031809
rosa_multiflora	Rmu_co8031236.1_g000001 Rmu_co8098122.1_g000001 Rmu_co8217558.1_g000001 Rmu_co8502817.1_g000001 Rmu_sc0000795.1_g000001 Rmu_sc0003315.1_g000001 Rmu_sc0005999.1_g000013 Rmu_sc0007338.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065320 Rroxscaffold_4G00323480 Rroxscaffold_6G00421200
rosa_rugosa	Rorug01G0062400 Rorug01G0062500 Rorug03G0025600 Rorug03G0025700
rosa_samantha	Rh1AG079500 Rh1BG063700 Rh1CG077100 Rh1DG083600 Rh3AG086400 Rh3BG089100 Rh3CG089700 Rh3DG090200 Rh5AG087400 Rh5BG082200 Rh5CG095000 Rh5DG081800
rosa_wichuraiana	Rw0G000180 Rw0G017770 Rw1G006310 Rw3G007330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
AasI	GACNNNNNNGTC	2 cut(s)	149, 206
AatII	GACGTC	1 cut(s)	153
Acc36I	ACCTGC	1 cut(s)	92
Acc65I	GGTACC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	252
AccB7I	CCANNNNNTGG	1 cut(s)	617
AciI	CCGC	3 cut(s)	60, 94, 121
AclWI	GGATC	1 cut(s)	297
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	1 cut(s)	561
AcyI	GRCGYC	2 cut(s)	150, 376
AfaI	GTAC	2 cut(s)	254, 529
AfiI	CCNNNNNNNGG	7 cut(s)	39, 40, 70, 221, 225, 226, 617
AflII	CTTAAG	1 cut(s)	407
AgsI	TTSAA	2 cut(s)	401, 514
AluBI	AGCT	5 cut(s)	12, 322, 346, 406, 493
AluI	AGCT	5 cut(s)	12, 322, 346, 406, 493
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	382
AoxI	GGCC	2 cut(s)	61, 412
ApeKI	GCWGC	3 cut(s)	123, 126, 517
ApoI	RAATTY	1 cut(s)	596
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
Asp718I	GGTACC	1 cut(s)	252
AspLEI	GCGC	2 cut(s)	26, 56
AspS9I	GGNCC	2 cut(s)	242, 412
AsuHPI	GGTGA	2 cut(s)	154, 545
AvaI	CYCGRG	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	3 cut(s)	110, 113, 529
BccI	CCATC	2 cut(s)	223, 542
BceAI	ACGGC	2 cut(s)	2, 67
BcgI	CGANNNNNNTGC	3 cut(s)	26, 30, 60
BclI	TGATCA	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	171
BfmI	CTRYAG	2 cut(s)	328, 601
BfoI	RGCGCY	1 cut(s)	57
BfrI	CTTAAG	1 cut(s)	407
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	5 cut(s)	61, 121, 124, 127, 518
BlsI	GCNGC	5 cut(s)	62, 122, 125, 128, 519
Bme18I	GGWCC	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	382
BmgT120I	GGNCC	2 cut(s)	242, 412
BmiI	GGNNCC	2 cut(s)	243, 254
BmsI	GCATC	2 cut(s)	138, 592
BpiI	GAAGAC	1 cut(s)	267
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpuEI	CTTGAG	1 cut(s)	355
BsaBI	GATNNNNATC	1 cut(s)	288
BsaHI	GRCGYC	2 cut(s)	150, 376
BsaJI	CCNNGG	3 cut(s)	165, 220, 383
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	7 cut(s)	39, 40, 70, 221, 225, 226, 617
Bse1I	ACTGG	1 cut(s)	254
Bse3DI	GCAATG	1 cut(s)	318
Bse8I	GATNNNNATC	1 cut(s)	288
BseDI	CCNNGG	3 cut(s)	165, 220, 383
BseGI	GGATG	2 cut(s)	215, 583
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	7 cut(s)	39, 40, 70, 221, 225, 226, 617
BseMI	GCAATG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	254
BseSI	GKGCMC	1 cut(s)	449
BseXI	GCAGC	3 cut(s)	110, 113, 529
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	2 cut(s)	63, 414
BshNI	GGYRCC	1 cut(s)	252
BsiEI	CGRYCG	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	7 cut(s)	39, 40, 70, 221, 225, 226, 617
BsmAI	GTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	2 cut(s)	63, 414
BsoBI	CYCGRG	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	449
Bsp143I	GATC	3 cut(s)	115, 289, 303
BspACI	CCGC	3 cut(s)	60, 94, 121
BspANI	GGCC	2 cut(s)	63, 414
BspLI	GGNNCC	2 cut(s)	243, 254
BspMAI	CTGCAG	2 cut(s)	332, 605
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	297
BspQI	GCTCTTC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	252
BspTI	CTTAAG	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	3 cut(s)	165, 220, 383
BssMI	GATC	3 cut(s)	115, 289, 303
BssNI	GRCGYC	2 cut(s)	150, 376
BssT1I	CCWWGG	2 cut(s)	165, 220
Bst4CI	ACNGT	1 cut(s)	510
Bst6I	CTCTTC	1 cut(s)	345
BstACI	GRCGYC	2 cut(s)	150, 376
BstAFI	CTTAAG	1 cut(s)	407
BstC8I	GCNNGC	3 cut(s)	58, 94, 320
BstF5I	GGATG	2 cut(s)	215, 583
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	2 cut(s)	26, 56
BstKTI	GATC	3 cut(s)	118, 292, 306
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	3 cut(s)	115, 289, 303
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	9 cut(s)	23, 53, 60, 84, 93, 117, 126, 132, 352
BstSFI	CTRYAG	2 cut(s)	328, 601
BstSLI	GKGCMC	1 cut(s)	449
BstV1I	GCAGC	3 cut(s)	110, 113, 529
BstV2I	GAAGAC	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	63, 414
BtsCI	GGATG	2 cut(s)	215, 583
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	337
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	3 cut(s)	58, 94, 320
CfoI	GCGC	2 cut(s)	26, 56
Cfr13I	GGNCC	2 cut(s)	242, 412
CseI	GACGC	2 cut(s)	76, 365
Csp6I	GTAC	2 cut(s)	253, 528
CviAII	CATG	2 cut(s)	257, 643
CviJI	RGCY	9 cut(s)	12, 63, 170, 322, 346, 406, 414, 493, 573
CviKI_1	RGCY	9 cut(s)	12, 63, 170, 322, 346, 406, 414, 493, 573
CviQI	GTAC	2 cut(s)	253, 528
DpnI	GATC	3 cut(s)	117, 291, 305
DpnII	GATC	3 cut(s)	115, 289, 303
DrdI	GACNNNNNNGTC	2 cut(s)	149, 206
DseDI	GACNNNNNNGTC	2 cut(s)	149, 206
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco130I	CCWWGG	2 cut(s)	165, 220
Eco47I	GGWCC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	561
Eco88I	CYCGRG	1 cut(s)	382
EcoRI	GAATTC	1 cut(s)	596
EcoT14I	CCWWGG	2 cut(s)	165, 220
ErhI	CCWWGG	2 cut(s)	165, 220
FaeI	CATG	2 cut(s)	260, 646
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	2 cut(s)	256, 642
FauI	CCCGC	1 cut(s)	101
FbaI	TGATCA	1 cut(s)	303
Fnu4HI	GCNGC	5 cut(s)	61, 121, 124, 127, 518
FokI	GGATG	2 cut(s)	202, 570
Fsp4HI	GCNGC	5 cut(s)	61, 121, 124, 127, 518
GlaI	GCGC	2 cut(s)	25, 55
GluI	GCNGC	5 cut(s)	61, 121, 124, 127, 518
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	2 cut(s)	63, 414
HgaI	GACGC	2 cut(s)	76, 365
HhaI	GCGC	2 cut(s)	26, 56
Hin1I	GRCGYC	2 cut(s)	150, 376
Hin1II	CATG	2 cut(s)	260, 646
Hin6I	GCGC	2 cut(s)	24, 54
HinP1I	GCGC	2 cut(s)	24, 54
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	2 cut(s)	29, 536
HphI	GGTGA	2 cut(s)	154, 545
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	2 cut(s)	393, 541
Hpy8I	GTNNAC	1 cut(s)	485
Hpy99I	CGWCG	5 cut(s)	92, 116, 152, 155, 381
HpyAV	CCTTC	1 cut(s)	463
HpyCH4III	ACNGT	1 cut(s)	510
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	5 cut(s)	129, 135, 318, 330, 603
HpyF10VI	GCNNNNNNNGC	9 cut(s)	23, 53, 60, 84, 93, 117, 126, 132, 352
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	2 cut(s)	150, 376
Hsp92II	CATG	2 cut(s)	260, 646
HspAI	GCGC	2 cut(s)	24, 54
KpnI	GGTACC	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	303
Kzo9I	GATC	3 cut(s)	115, 289, 303
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	5 cut(s)	97, 235, 332, 340, 516
Lsp1109I	GCAGC	3 cut(s)	110, 113, 529
LweI	GCATC	2 cut(s)	138, 592
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	3 cut(s)	160, 338, 533
MalI	GATC	3 cut(s)	117, 291, 305
MboI	GATC	3 cut(s)	115, 289, 303
MboII	GAAGA	2 cut(s)	272, 362
MfeI	CAATTG	1 cut(s)	360
MhlI	GDGCHC	1 cut(s)	449
MluCI	AATT	2 cut(s)	360, 596
MlyI	GAGTC	2 cut(s)	23, 530
MnlI	CCTC	9 cut(s)	44, 64, 107, 219, 223, 378, 459, 459, 560
MseI	TTAA	2 cut(s)	195, 408
MspA1I	CMGCKG	1 cut(s)	123
MspCI	CTTAAG	1 cut(s)	407
MunI	CAATTG	1 cut(s)	360
MwoI	GCNNNNNNNGC	9 cut(s)	23, 53, 60, 84, 93, 117, 126, 132, 352
NdeII	GATC	3 cut(s)	115, 289, 303
NlaIII	CATG	2 cut(s)	260, 646
NlaIV	GGNNCC	2 cut(s)	243, 254
NmuCI	GTSAC	3 cut(s)	160, 338, 533
PaqCI	CACCTGC	1 cut(s)	92
PciSI	GCTCTTC	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PflMI	CCANNNNNTGG	1 cut(s)	617
PkrI	GCNGC	5 cut(s)	62, 122, 125, 128, 519
Ple19I	CGATCG	1 cut(s)	118
PleI	GAGTC	2 cut(s)	23, 530
PpsI	GAGTC	2 cut(s)	23, 530
PspN4I	GGNNCC	2 cut(s)	243, 254
PspPI	GGNCC	2 cut(s)	242, 412
PstI	CTGCAG	2 cut(s)	332, 605
PvuI	CGATCG	1 cut(s)	118
RsaI	GTAC	2 cut(s)	254, 529
RsaNI	GTAC	2 cut(s)	253, 528
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	195, 408
SatI	GCNGC	5 cut(s)	61, 121, 124, 127, 518
Sau3AI	GATC	3 cut(s)	115, 289, 303
Sau96I	GGNCC	2 cut(s)	242, 412
SchI	GAGTC	2 cut(s)	23, 530
SduI	GDGCHC	1 cut(s)	449
SfaNI	GCATC	2 cut(s)	138, 592
SfcI	CTRYAG	2 cut(s)	328, 601
SinI	GGWCC	1 cut(s)	242
SmlI	CTYRAG	2 cut(s)	370, 407
SmoI	CTYRAG	2 cut(s)	370, 407
Sse9I	AATT	2 cut(s)	360, 596
SsiI	CCGC	3 cut(s)	60, 94, 121
StyI	CCWWGG	2 cut(s)	165, 220
TaaI	ACNGT	1 cut(s)	510
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	36, 279
TaqII	GACCGA	2 cut(s)	155, 196
TasI	AATT	2 cut(s)	360, 596
TauI	GCSGC	2 cut(s)	63, 123
Tru1I	TTAA	2 cut(s)	195, 408
Tru9I	TTAA	2 cut(s)	195, 408
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	3 cut(s)	160, 338, 533
TseI	GCWGC	3 cut(s)	123, 126, 517
Tsp45I	GTSAC	3 cut(s)	160, 338, 533
TspDTI	ATGAA	3 cut(s)	94, 273, 642
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	337
Van91I	CCANNNNNTGG	1 cut(s)	617
Vha464I	CTTAAG	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	596
ZraI	GACGTC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.