Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0000854

Physical Location & Seq

Genomic Coordinates Reverse (-)

19259238 .. 19262426

Gene Structure 3189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g16610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2385 bp

ATGGGCCCTGTGGCCATCGCGAGGTCTGCTCCACCTGCACTATTCGGCTCCGTTTCATATGTGAAGATTCCCGTTGCTGCATCTGCAAGAGTGAATCTAAGATCGATCTTTGTCACGAAGGCTTTAGGCGACTATACAACGATGATTAATGACTTTTCAGTTTTCCCAGCCAATCCAGTGGAGGGTCAAGTTGGAAAGTATTGGTATCATGAAGGAACACAAGCATTTTTTGATGATCTTGATCACTACAAGATGATAAAGGCCATGTGCAAGCTATCTTGTGGCGTTTGTGATAAGATAAAAGAACAAAAGAGTGAAGTGTCAAAGAGAAAACAGGAGTTTAAAAATGTCGAACGGCTGAAAAATCATTTGTTCCATTGTCATGGATTGTTCATGTGCAGTCTGTGTTTGGGCGGTAGGAAGATCTTTATCTGTGAGCAAAAGTTATATACTAAAGCTCAATTGGGTCGGCATACAGAGACAGGTGATTTAGAGGTAGACGGCAATGAGACTGAAAGATGTGGATTTAATGGACATCCTATGTGTGAGTTTTGCAGCAATCCGTTTTATGGAGATAATGAGTTGTACATGCATATGTCCACTGAGCACTATACTTGCCATATATGCCAAAGGCAACGTCCAGGACAATATGAATACTACAATATCTATGATGACTTGGAGAGTCATTTTTCTCAAGCTCATTTCTTATGCAAAGATGACGATTGCTTAACAAAGAAGTTTGTTGTTTTTGCAACTGAATCTGAACTAAAGAGGCATAATGCCAAGGAACACGGAGGGAACATGTCTCGCTCTAGGCGTAATATTGCTCTTAAGATACCAGTGAACTTCCAGTGTAGAAGTAATGAGACTGATCTTCATGGACCTTATGTTAGAGGACGTGGTTTTCATTTTAATTATGCAGACAATCAACTTTCCGTGGCACTTCAAGCTAGCCATGATACAGCCACTGCAGAAAGGTGCCGTAATGCATCGTCTAGTACACAACAAGCTTCTATTCACCAAGAAACAAGCGAACTTGAAACTGTTGCTGGCCGTTTTGAGGCATTACCTACTGCCGATTTTGAGTCTTCTTCAAGAGAAAATCCCCGGATTGAACTACAAGAAGCATCATCCTTCCCTCCACTTCCAGTGGCTCAAAGAGACAGACAACAGAAATTAAGAAATGGTTCACAAGGATTGGGTGGTAGTTCAATGGCTTCTCGCATTCGTCGCCTTAACAAAGTAACTGTCCTTAATGCTTCTCCAGTTTGGCCTGCAACAAATCGTCAACCTAAATCATCTGCCAGTAGTTCTCACCAGAAAAAGCCCTCTTCAGGCTCTGGGCACATATCATCATCTAGTTCTCCTGTATTTTTCCCGAGCGGTCCCGTTAAGCAAGCTGCAGCCACTGGGTTTGTTTCATCTAATTTTACTAGTCCAAAGAATTCGACTGGAACCAGTAAGGTCACCCAATCTGCTTCAGGTCCAAAAATTATCAATACTGGTACTTTGGACTCCGATTTTCCTTCTGTTTCTGCTAATCAAACAAATAAAGAACCTGCTACTGCAAGTATTCAGAGAGTGCCAAAGGTTGGAGATGTTCATGTTGTCAACAAGTCTGTTGTGGAAAAAATCCGTGATGCTTTGGAACGTGATGACAACAAATTCTCCGCATTTAAAGAAATATCTTCAGACTACCGCAAGGATATAATCAATACAGAGGAATATCTTGCTTATGTCTACCAGTTCGGCCTGTCACATTTGCTTCTCGAGCTGGCTAGACTCTGTCCTGATGCTGAGAAACAAAGAGAACTTGTCGAGACTTACAATTTTAATATGAGGAGCAGCAGTACTCATGAAAACAGTTTGTGCAATGGCAGTAGCAAGTCAAGGAGCAAAAGCTCCAAGAAAGGCAAGGAAAAGTGTGAAGATAATGGAATTAAGAGTTCGAAATATGCTCTGCTAGATTTTCCTGTCATCCCTGTGAGGAATTTGCAGTCGAACCATAAACCTCCAGCGGTCTCATTGAAGGACATCGTTCAGTCAGCCAAAGGAAAGTCGAAGATTTCAGTTGATGATGAACTTCCAGAGAATCAAAGGTTGACAGGTCAAAAAGGTTCTCAGTTATCTGGTAGCACCTCAAATAACAATTTGGGGACCGCAGGAGCTGGTACTAAGCAAGGGAAAAAGACTCCAAAGTTTATCAGAAACCGCCTTGGCAACGATGCTACAAAACTCTCTGAACTTGGTGATCGTCCTGAGCCGATTCAAGAAAAAAATGATGGAAACAAGGATCCACCAGAAGGATTGCTAGTGCGTGGAGTTTGGCAAAATGGAGGTGGTCGTAAGCTCGTGAAGATGACCTCGAGGGATGGTAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

795

Amino Acids

87.98

Weight (kDa)

9.16

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_13	PF23230	203 - 259	1.5e-14	C2H2-type zinc finger
PAH_ZNF598	PF23202	538 - 610	1.7e-21	ZNF598 PAH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47090 AT2G47090 AT2G47090 AT2G47090 AT2G47090 AT3G62240
fragaria_vesca	FvH4_3g07600 FvH4_6g08350 FvH4_6g08350 FvH4_6g08350 FvH4_6g08350 FvH4_7g03760 FvH4_7g03760 FvH4_7g03760
malus_domestica	MD02G1277600.v1.1 MD04G1187900.v1.1 MD07G1045700.v1.1
prunus_persica	Prupe.2G042900_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1 Prupe.6G306300_v2.0.a1
pyrus_communis	pycom02g23760 pycom02g23770 pycom04g16610 pycom04g16640 pycom07g03260 pycom07g03270
rosa_chinensis	RchiOBHm_Chr1g0326951 RchiOBHm_Chr3g0458251 RchiOBHm_Chr5g0011091
rosa_laevigata	RLG00000025171 RLG00000030049 RLG00000031809
rosa_multiflora	Rmu_co8031236.1_g000001 Rmu_co8098122.1_g000001 Rmu_co8217558.1_g000001 Rmu_co8502817.1_g000001 Rmu_sc0000795.1_g000001 Rmu_sc0003315.1_g000001 Rmu_sc0005999.1_g000013 Rmu_sc0007338.1_g000004
rosa_roxburghii	Rroxscaffold_1G00065320 Rroxscaffold_4G00323480 Rroxscaffold_6G00421200
rosa_rugosa	Rorug01G0062400 Rorug01G0062500 Rorug03G0025600 Rorug03G0025700
rosa_samantha	Rh1AG079500 Rh1BG063700 Rh1CG077100 Rh1DG083600 Rh3AG086400 Rh3BG089100 Rh3CG089700 Rh3DG090200 Rh5AG087400 Rh5BG082200 Rh5CG095000 Rh5DG081800
rosa_wichuraiana	Rw0G000180 Rw0G017770 Rw1G006310 Rw3G007330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
AbsI	CCTCGAGG	1 cut(s)	2365
Acc36I	ACCTGC	2 cut(s)	43, 1567
AccB1I	GGYRCC	1 cut(s)	978
AccB7I	CCANNNNNTGG	1 cut(s)	1592
AccBSI	CCGCTC	1 cut(s)	1383
AccI	GTMKAC	2 cut(s)	498, 1740
AccII	CGCG	1 cut(s)	20
AciI	CCGC	7 cut(s)	414, 1383, 1671, 1699, 2018, 2160, 2212
AclWI	GGATC	2 cut(s)	2288, 2301
AcoI	YGGCCR	2 cut(s)	12, 1051
AcsI	RAATTY	3 cut(s)	1444, 1664, 1990
AcuI	CTGAAG	3 cut(s)	1317, 1464, 1674
AfaI	GTAC	5 cut(s)	587, 1000, 1507, 1852, 2173
AfiI	CCNNNNNNNGG	7 cut(s)	21, 182, 569, 1060, 1334, 1592, 2303
AflII	CTTAAG	1 cut(s)	830
AflIII	ACRYGT	1 cut(s)	801
AgsI	TTSAA	7 cut(s)	947, 1040, 1095, 1115, 1212, 2029, 2270
AhlI	ACTAGT	1 cut(s)	1433
AjiI	CACGTC	1 cut(s)	899
AjnI	CCWGG	1 cut(s)	640
Alw21I	GWGCWC	1 cut(s)	609
Alw26I	GTCTC	7 cut(s)	473, 503, 810, 860, 1155, 1814, 2026
AlwI	GGATC	2 cut(s)	2288, 2301
AlwNI	CAGNNNCTG	4 cut(s)	968, 1340, 1409, 2168
Ama87I	CYCGRG	3 cut(s)	1378, 1769, 2365
AoxI	GGCC	6 cut(s)	4, 12, 261, 1051, 1271, 1750
ApaI	GGGCCC	1 cut(s)	8
ApeKI	GCWGC	5 cut(s)	77, 555, 1400, 1403, 1845
ApoI	RAATTY	3 cut(s)	1444, 1664, 1990
ArsI	GACNNNNNNTTYG	4 cut(s)	622, 654, 1233, 1265
AseI	ATTAAT	1 cut(s)	147
Asp700I	GAANNNNTTC	1 cut(s)	1186
AspS9I	GGNCC	6 cut(s)	4, 5, 881, 1385, 1484, 2157
AsuC2I	CCSGG	1 cut(s)	1108
AsuHPI	GGTGA	5 cut(s)	497, 1010, 1307, 1459, 2261
AsuII	TTCGAA	1 cut(s)	1949
AsuNHI	GCTAGC	1 cut(s)	950
AvaI	CYCGRG	3 cut(s)	1378, 1769, 2365
AvaII	GGWCC	4 cut(s)	881, 1385, 1484, 2157
BaeGI	GKGCMC	2 cut(s)	8, 1347
BalI	TGGCCA	1 cut(s)	14
BamHI	GGATCC	1 cut(s)	2293
BanI	GGYRCC	1 cut(s)	978
BanII	GRGCYC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	2351
BbsI	GAAGAC	1 cut(s)	1080
Bbv12I	GWGCWC	1 cut(s)	609
BbvI	GCAGC	5 cut(s)	64, 567, 1387, 1415, 1857
BccI	CCATC	3 cut(s)	23, 2276, 2366
BceAI	ACGGC	4 cut(s)	371, 517, 966, 1038
BciT130I	CCWGG	1 cut(s)	642
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	1108
BcoDI	GTCTC	7 cut(s)	473, 503, 810, 860, 1155, 1814, 2026
BcuI	ACTAGT	1 cut(s)	1433
BfaI	CTAG	8 cut(s)	813, 951, 996, 1359, 1434, 1779, 1964, 2312
BfmI	CTRYAG	2 cut(s)	969, 1401
BfrI	CTTAAG	1 cut(s)	830
BfuAI	ACCTGC	2 cut(s)	43, 1567
BglII	AGATCT	1 cut(s)	423
BisI	GCNGC	5 cut(s)	78, 556, 1401, 1404, 1846
BlsI	GCNGC	5 cut(s)	79, 557, 1402, 1405, 1847
BmcAI	AGTACT	1 cut(s)	1852
Bme1390I	CCNGG	2 cut(s)	642, 1108
Bme18I	GGWCC	4 cut(s)	881, 1385, 1484, 2157
BmeT110I	CYCGRG	3 cut(s)	1378, 1769, 2365
BmgBI	CACGTC	1 cut(s)	899
BmgT120I	GGNCC	6 cut(s)	4, 5, 881, 1385, 1484, 2157
BmiI	GGNNCC	7 cut(s)	6, 49, 980, 1387, 1456, 2158, 2295
BmrFI	CCNGG	2 cut(s)	642, 1108
BmrI	ACTGGG	1 cut(s)	1419
BmsI	GCATC	6 cut(s)	89, 998, 1136, 1630, 1783, 2215
BmtI	GCTAGC	1 cut(s)	954
BmuI	ACTGGG	1 cut(s)	1419
BpiI	GAAGAC	1 cut(s)	1080
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
BpmI	CTGGAG	2 cut(s)	1248, 1998
Bpu10I	CCTNAGC	1 cut(s)	2259
Bpu14I	TTCGAA	1 cut(s)	1949
BpuEI	CTTGAG	1 cut(s)	678
BpuMI	CCSGG	1 cut(s)	1108
Bsa29I	ATCGAT	1 cut(s)	104
BsaBI	GATNNNNATC	2 cut(s)	240, 428
BsaI	GGTCTC	1 cut(s)	2026
BsaJI	CCNNGG	4 cut(s)	783, 936, 1106, 2215
BsaXI	ACNNNNNCTCC	4 cut(s)	1652, 1682, 1834, 1864
Bsc4I	CCNNNNNNNGG	7 cut(s)	21, 182, 569, 1060, 1334, 1592, 2303
Bse3DI	GCAATG	2 cut(s)	511, 1879
Bse8I	GATNNNNATC	2 cut(s)	240, 428
BseBI	CCWGG	1 cut(s)	642
BseCI	ATCGAT	1 cut(s)	104
BseDI	CCNNGG	4 cut(s)	783, 936, 1106, 2215
BseGI	GGATG	4 cut(s)	535, 1130, 1977, 2377
BseJI	GATNNNNATC	2 cut(s)	240, 428
BseLI	CCNNNNNNNGG	7 cut(s)	21, 182, 569, 1060, 1334, 1592, 2303
BseMI	GCAATG	2 cut(s)	511, 1879
BseMII	CTCAG	4 cut(s)	594, 1788, 2135, 2250
BseRI	GAGGAG	1 cut(s)	1855
BseSI	GKGCMC	2 cut(s)	8, 1347
BseXI	GCAGC	5 cut(s)	64, 567, 1387, 1415, 1857
BseYI	CCCAGC	1 cut(s)	166
BsgI	GTGCAG	2 cut(s)	21, 418
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	6 cut(s)	6, 14, 263, 1053, 1273, 1752
BshNI	GGYRCC	1 cut(s)	978
BshVI	ATCGAT	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	609
BsiHKCI	CYCGRG	3 cut(s)	1378, 1769, 2365
BsiSI	CCGG	1 cut(s)	1108
BslFI	GGGAC	2 cut(s)	1371, 2170
BslI	CCNNNNNNNGG	7 cut(s)	21, 182, 569, 1060, 1334, 1592, 2303
BsmAI	GTCTC	7 cut(s)	473, 503, 810, 860, 1155, 1814, 2026
BsmFI	GGGAC	2 cut(s)	1371, 2170
BsmI	GAATGC	1 cut(s)	1224
BsnI	GGCC	6 cut(s)	6, 14, 263, 1053, 1273, 1752
Bso31I	GGTCTC	1 cut(s)	2026
BsoBI	CYCGRG	3 cut(s)	1378, 1769, 2365
Bsp119I	TTCGAA	1 cut(s)	1949
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	3 cut(s)	8, 609, 1347
Bsp1407I	TGTACA	1 cut(s)	585
Bsp143I	GATC	8 cut(s)	101, 105, 235, 241, 423, 871, 2251, 2293
Bsp68I	TCGCGA	1 cut(s)	20
BspACI	CCGC	7 cut(s)	414, 1383, 1671, 1699, 2018, 2160, 2212
BspANI	GGCC	6 cut(s)	6, 14, 263, 1053, 1273, 1752
BspCNI	CTCAG	4 cut(s)	595, 1789, 2134, 2251
BspDI	ATCGAT	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	20
BspHI	TCATGA	2 cut(s)	208, 1855
BspLI	GGNNCC	7 cut(s)	6, 49, 980, 1387, 1456, 2158, 2295
BspMAI	CTGCAG	2 cut(s)	973, 1405
BspMI	ACCTGC	2 cut(s)	43, 1567
BspOI	GCTAGC	1 cut(s)	954
BspPI	GGATC	2 cut(s)	2288, 2301
BspT104I	TTCGAA	1 cut(s)	1949
BspT107I	GGYRCC	1 cut(s)	978
BspTI	CTTAAG	1 cut(s)	830
BspTNI	GGTCTC	1 cut(s)	2026
BsrBI	CCGCTC	1 cut(s)	1383
BsrDI	GCAATG	2 cut(s)	511, 1879
BsrGI	TGTACA	1 cut(s)	585
BssECI	CCNNGG	4 cut(s)	783, 936, 1106, 2215
BssMI	GATC	8 cut(s)	101, 105, 235, 241, 423, 871, 2251, 2293
BssSI	CACGAG	1 cut(s)	2351
BssT1I	CCWWGG	2 cut(s)	783, 2215
Bst2BI	CACGAG	1 cut(s)	2351
Bst2UI	CCWGG	1 cut(s)	642
Bst4CI	ACNGT	3 cut(s)	1045, 1249, 1865
Bst6I	CTCTTC	1 cut(s)	1336
BstAFI	CTTAAG	1 cut(s)	830
BstAUI	TGTACA	1 cut(s)	585
BstBI	TTCGAA	1 cut(s)	1949
BstC8I	GCNNGC	6 cut(s)	272, 952, 1051, 1275, 1398, 1776
BstDEI	CTNAG	6 cut(s)	98, 603, 1797, 2121, 2175, 2259
BstDSI	CCRYGG	1 cut(s)	936
BstEII	GGTNACC	1 cut(s)	1465
BstF5I	GGATG	4 cut(s)	535, 1130, 1977, 2377
BstFNI	CGCG	1 cut(s)	20
BstKTI	GATC	8 cut(s)	104, 108, 238, 244, 426, 874, 2254, 2296
BstMAI	GTCTC	7 cut(s)	473, 503, 810, 860, 1155, 1814, 2026
BstMBI	GATC	8 cut(s)	101, 105, 235, 241, 423, 871, 2251, 2293
BstMWI	GCNNNNNNNGC	7 cut(s)	26, 35, 83, 624, 947, 1230, 1771
BstNI	CCWGG	1 cut(s)	642
BstNSI	RCATGY	2 cut(s)	592, 805
BstPI	GGTNACC	1 cut(s)	1465
BstSCI	CCNGG	2 cut(s)	640, 1106
BstSFI	CTRYAG	2 cut(s)	969, 1401
BstSLI	GKGCMC	2 cut(s)	8, 1347
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	5 cut(s)	64, 567, 1387, 1415, 1857
BstV2I	GAAGAC	1 cut(s)	1080
BstX2I	RGATCY	2 cut(s)	423, 2293
BstXI	CCANNNNNNTGG	2 cut(s)	178, 383
BstYI	RGATCY	2 cut(s)	423, 2293
Bsu15I	ATCGAT	1 cut(s)	104
BsuRI	GGCC	6 cut(s)	6, 14, 263, 1053, 1273, 1752
BsuTUI	ATCGAT	1 cut(s)	104
BtgI	CCRYGG	1 cut(s)	936
BtrI	CACGTC	1 cut(s)	899
BtsCI	GGATG	4 cut(s)	535, 1130, 1977, 2377
BtsI	GCAGTG	1 cut(s)	966
BtsIMutI	CAGTG	7 cut(s)	183, 600, 846, 857, 966, 1155, 1407
BtuMI	TCGCGA	1 cut(s)	20
BveI	ACCTGC	2 cut(s)	43, 1567
Cac8I	GCNNGC	6 cut(s)	272, 952, 1051, 1275, 1398, 1776
CaiI	CAGNNNCTG	4 cut(s)	968, 1340, 1409, 2168
CciI	TCATGA	2 cut(s)	208, 1855
Cfr13I	GGNCC	6 cut(s)	4, 5, 881, 1385, 1484, 2157
ClaI	ATCGAT	1 cut(s)	104
Csp6I	GTAC	5 cut(s)	586, 999, 1506, 1851, 2172
CspCI	CAANNNNNGTGG	2 cut(s)	1396, 1431
CviQI	GTAC	5 cut(s)	586, 999, 1506, 1851, 2172
DdeI	CTNAG	6 cut(s)	98, 603, 1797, 2121, 2175, 2259
DpnI	GATC	8 cut(s)	103, 107, 237, 243, 425, 873, 2253, 2295
DpnII	GATC	8 cut(s)	101, 105, 235, 241, 423, 871, 2251, 2293
DraI	TTTAAA	2 cut(s)	343, 1678
EaeI	YGGCCR	2 cut(s)	12, 1051
Eam1104I	CTCTTC	1 cut(s)	1336
EarI	CTCTTC	1 cut(s)	1336
Eco130I	CCWWGG	2 cut(s)	783, 2215
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	2026
Eco47I	GGWCC	4 cut(s)	881, 1385, 1484, 2157
Eco57I	CTGAAG	3 cut(s)	1317, 1464, 1674
Eco88I	CYCGRG	3 cut(s)	1378, 1769, 2365
Eco91I	GGTNACC	1 cut(s)	1465
EcoO109I	RGGNCCY	1 cut(s)	5
EcoO65I	GGTNACC	1 cut(s)	1465
EcoRI	GAATTC	1 cut(s)	1444
EcoRII	CCWGG	1 cut(s)	640
EcoT14I	CCWWGG	2 cut(s)	783, 2215
EcoT22I	ATGCAT	2 cut(s)	594, 991
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	783, 2215
FaqI	GGGAC	2 cut(s)	1371, 2170
FauNDI	CATATG	2 cut(s)	58, 594
FbaI	TGATCA	1 cut(s)	241
FblI	GTMKAC	2 cut(s)	498, 1740
Fnu4HI	GCNGC	5 cut(s)	78, 556, 1401, 1404, 1846
FokI	GGATG	3 cut(s)	522, 1117, 1964
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	5 cut(s)	78, 556, 1401, 1404, 1846
FspBI	CTAG	8 cut(s)	813, 951, 996, 1359, 1434, 1779, 1964, 2312
GluI	GCNGC	5 cut(s)	78, 556, 1401, 1404, 1846
GsaI	CCCAGC	1 cut(s)	170
GsuI	CTGGAG	2 cut(s)	1248, 1998
HaeIII	GGCC	6 cut(s)	6, 14, 263, 1053, 1273, 1752
HapII	CCGG	1 cut(s)	1108
HincII	GTYRAC	3 cut(s)	1289, 1612, 2103
HindII	GTYRAC	3 cut(s)	1289, 1612, 2103
HindIII	AAGCTT	1 cut(s)	1008
HpaII	CCGG	1 cut(s)	1108
HphI	GGTGA	5 cut(s)	497, 1010, 1307, 1459, 2261
Hpy166II	GTNNAC	9 cut(s)	499, 600, 844, 1001, 1190, 1289, 1612, 1741, 2103
Hpy188I	TCNGA	6 cut(s)	763, 1519, 1578, 1693, 2207, 2242
Hpy8I	GTNNAC	9 cut(s)	499, 600, 844, 1001, 1190, 1289, 1612, 1741, 2103
Hpy99I	CGWCG	1 cut(s)	1233
HpyAV	CCTTC	6 cut(s)	112, 206, 1144, 1536, 2023, 2297
HpyCH4III	ACNGT	3 cut(s)	1045, 1249, 1865
HpyCH4IV	ACGT	3 cut(s)	637, 898, 1651
HpyF10VI	GCNNNNNNNGC	7 cut(s)	26, 35, 83, 624, 947, 1230, 1771
HpyF3I	CTNAG	6 cut(s)	98, 603, 1797, 2121, 2175, 2259
HpySE526I	ACGT	3 cut(s)	637, 898, 1651
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	8 cut(s)	101, 105, 235, 241, 423, 871, 2251, 2293
LmnI	GCTCC	6 cut(s)	34, 53, 1842, 1893, 1907, 2165
Lsp1109I	GCAGC	5 cut(s)	64, 567, 1387, 1415, 1857
LweI	GCATC	6 cut(s)	89, 998, 1136, 1630, 1783, 2215
MaeI	CTAG	8 cut(s)	813, 951, 996, 1359, 1434, 1779, 1964, 2312
MaeII	ACGT	3 cut(s)	637, 898, 1651
MaeIII	GTNAC	4 cut(s)	112, 1243, 1465, 1755
MalI	GATC	8 cut(s)	103, 107, 237, 243, 425, 873, 2253, 2295
MbiI	CCGCTC	1 cut(s)	1383
MboI	GATC	8 cut(s)	101, 105, 235, 241, 423, 871, 2251, 2293
MfeI	CAATTG	1 cut(s)	461
MflI	RGATCY	2 cut(s)	423, 2293
MhlI	GDGCHC	3 cut(s)	8, 609, 1347
MlsI	TGGCCA	1 cut(s)	14
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	5 cut(s)	691, 1094, 1508, 1776, 2185
MmeI	TCCRAC	2 cut(s)	172, 1573
Mox20I	TGGCCA	1 cut(s)	14
Mph1103I	ATGCAT	2 cut(s)	594, 991
MroXI	GAANNNNTTC	1 cut(s)	1186
MscI	TGGCCA	1 cut(s)	14
MslI	CAYNNNNRTG	3 cut(s)	381, 593, 1982
Msp20I	TGGCCA	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	2018
MspCI	CTTAAG	1 cut(s)	830
MspI	CCGG	1 cut(s)	1108
MspR9I	CCNGG	2 cut(s)	642, 1108
MunI	CAATTG	1 cut(s)	461
Mva1269I	GAATGC	1 cut(s)	1224
MvaI	CCWGG	1 cut(s)	642
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	7 cut(s)	26, 35, 83, 624, 947, 1230, 1771
NciI	CCSGG	1 cut(s)	1108
NdeI	CATATG	2 cut(s)	58, 594
NdeII	GATC	8 cut(s)	101, 105, 235, 241, 423, 871, 2251, 2293
NheI	GCTAGC	1 cut(s)	950
NlaIV	GGNNCC	7 cut(s)	6, 49, 980, 1387, 1456, 2158, 2295
NmuCI	GTSAC	3 cut(s)	112, 1465, 1755
NruI	TCGCGA	1 cut(s)	20
NsiI	ATGCAT	2 cut(s)	594, 991
NspI	RCATGY	2 cut(s)	592, 805
NspV	TTCGAA	1 cut(s)	1949
PaeR7I	CTCGAG	2 cut(s)	1769, 2365
PagI	TCATGA	2 cut(s)	208, 1855
PaqCI	CACCTGC	1 cut(s)	43
PciI	ACATGT	1 cut(s)	801
PcsI	WCGNNNNNNNCGW	1 cut(s)	814
PctI	GAATGC	1 cut(s)	1224
PdmI	GAANNNNTTC	1 cut(s)	1186
PfeI	GAWTC	5 cut(s)	67, 94, 758, 2092, 2266
PflFI	GACNNNGTC	1 cut(s)	1785
PflMI	CCANNNNNTGG	1 cut(s)	1592
PfoI	TCCNGGA	1 cut(s)	640
PkrI	GCNGC	5 cut(s)	79, 557, 1402, 1405, 1847
PleI	GAGTC	5 cut(s)	690, 1093, 1508, 1776, 2185
PpsI	GAGTC	5 cut(s)	690, 1093, 1508, 1776, 2185
PscI	ACATGT	1 cut(s)	801
PshBI	ATTAAT	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	640
PspEI	GGTNACC	1 cut(s)	1465
PspFI	CCCAGC	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	640
PspN4I	GGNNCC	7 cut(s)	6, 49, 980, 1387, 1456, 2158, 2295
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	6 cut(s)	4, 5, 881, 1385, 1484, 2157
PspXI	VCTCGAGB	1 cut(s)	2365
PstI	CTGCAG	2 cut(s)	973, 1405
PstNI	CAGNNNCTG	4 cut(s)	968, 1340, 1409, 2168
PsuI	RGATCY	2 cut(s)	423, 2293
PsyI	GACNNNGTC	1 cut(s)	1785
RruI	TCGCGA	1 cut(s)	20
RsaI	GTAC	5 cut(s)	587, 1000, 1507, 1852, 2173
RsaNI	GTAC	5 cut(s)	586, 999, 1506, 1851, 2172
RseI	CAYNNNNRTG	3 cut(s)	381, 593, 1982
SatI	GCNGC	5 cut(s)	78, 556, 1401, 1404, 1846
Sau3AI	GATC	8 cut(s)	101, 105, 235, 241, 423, 871, 2251, 2293
Sau96I	GGNCC	6 cut(s)	4, 5, 881, 1385, 1484, 2157
ScaI	AGTACT	1 cut(s)	1852
SchI	GAGTC	5 cut(s)	691, 1094, 1508, 1776, 2185
ScrFI	CCNGG	2 cut(s)	642, 1108
SduI	GDGCHC	3 cut(s)	8, 609, 1347
SfaNI	GCATC	6 cut(s)	89, 998, 1136, 1630, 1783, 2215
SfcI	CTRYAG	2 cut(s)	969, 1401
Sfr274I	CTCGAG	2 cut(s)	1769, 2365
SfuI	TTCGAA	1 cut(s)	1949
SinI	GGWCC	4 cut(s)	881, 1385, 1484, 2157
SlaI	CTCGAG	2 cut(s)	1769, 2365
SmiMI	CAYNNNNRTG	3 cut(s)	381, 593, 1982
SmlI	CTYRAG	4 cut(s)	693, 830, 1769, 2365
SmoI	CTYRAG	4 cut(s)	693, 830, 1769, 2365
SpeI	ACTAGT	1 cut(s)	1433
SsiI	CCGC	7 cut(s)	414, 1383, 1671, 1699, 2018, 2160, 2212
SspI	AATATT	1 cut(s)	823
SspMI	CTAG	8 cut(s)	813, 951, 996, 1359, 1434, 1779, 1964, 2312
StyD4I	CCNGG	2 cut(s)	640, 1106
StyI	CCWWGG	2 cut(s)	783, 2215
TaaI	ACNGT	3 cut(s)	1045, 1249, 1865
TaiI	ACGT	3 cut(s)	640, 901, 1654
TaqI	TCGA	9 cut(s)	104, 351, 1448, 1770, 1818, 1949, 2000, 2060, 2366
TatI	WGTACW	3 cut(s)	585, 998, 1850
TfiI	GAWTC	5 cut(s)	67, 94, 758, 2092, 2266
TscAI	CASTG	7 cut(s)	183, 607, 846, 857, 973, 1155, 1414
TseFI	GTSAC	3 cut(s)	112, 1465, 1755
TseI	GCWGC	5 cut(s)	77, 555, 1400, 1403, 1845
Tsp45I	GTSAC	3 cut(s)	112, 1465, 1755
TspGWI	ACGGA	5 cut(s)	40, 552, 807, 925, 1625
TspRI	CASTG	7 cut(s)	183, 607, 846, 857, 973, 1155, 1414
Tth111I	GACNNNGTC	1 cut(s)	1785
Van91I	CCANNNNNTGG	1 cut(s)	1592
Vha464I	CTTAAG	1 cut(s)	830
VpaK11BI	GGWCC	4 cut(s)	881, 1385, 1484, 2157
VspI	ATTAAT	1 cut(s)	147
XapI	RAATTY	3 cut(s)	1444, 1664, 1990
XceI	RCATGY	2 cut(s)	592, 805
XhoI	CTCGAG	2 cut(s)	1769, 2365
XmiI	GTMKAC	2 cut(s)	498, 1740
XmnI	GAANNNNTTC	1 cut(s)	1186
XspI	CTAG	8 cut(s)	813, 951, 996, 1359, 1434, 1779, 1964, 2312
ZrmI	AGTACT	1 cut(s)	1852
Zsp2I	ATGCAT	2 cut(s)	594, 991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.