FvH4_1g26460

Catalyzes the formation of S-adenosylmethionine from methionine and ATP

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
18288967 .. 18292093
3127 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26460.t3

Sequence Viewer

Length: 1182 bp
ATGGAGACTTTCCTATTCACATCTGAATCTGTCAACGAGGGACACCCAGACAAGCTGTGCGACCAGATCTCTGACGCAGTACTTGATGCTTGCCTGGAGCAGGACCCTGACAGCAAGGTTGCCTGTGAGACATGCACCAAAACAAACATGGTAATGGTGTTCGGAGAGATCACCACCAAGGCCAATGTTGATTACGAGAAGATTGTCCGTGACACATGCCGCAACATTGGGTTTGTTTCTGATGATGTTGGTCTAGATGCCGATAACTGCAAGGTCCTAGTCAACATTGAGCAGCAGAGCCCAGATATTGCTCAGGGTGTCCATGGTCACTTTACCAAGCGCCCAGAGGAGATTGGTGCTGGTGACCAAGGTCACATGTTTGGCTATGCCACTGATGAAACCCCTGAGTTGATGCCCCTTAGCCATGTTCTTGCAACCAAGCTTGGTGCTAAACTCACTGAAGTCAGGAAGAATGGTACTTGCGCATGGCTGAGACCTGATGGCAAGACCCAGGTGACAGTTGAATACCACAATGAAGGCGGTGCTATGGTTCCACTTCGTGTCCACACTGTTCTTATCTCCACCCAGCATGATGAGACTGTAACAAATGATGAGATTGCTGCTGACCTTAAGGAGCATGTTATTAAGCCTGTCGTCCCTGAGAAGTACTTGGATGAGAAGACAATCTTCCATCTTAACCCCTCTGGTCGCTTTGTGATTGGTGGCCCTCATGGTGATGCAGGTCTAACTGGACGCAAGATCATTATTGATACCTATGGTGGTTGGGGAGCCCATGGTGGTGGTGCTTTCTCTGGAAAGGACCCTACCAAGGTGGACAGAAGTGGTGCTTACATTGTCAGGCAGGCTGCCAAGAGCATTGTTGCAAATGGTCTTGCTCGCAGGGCCCTCGTGCAGGTCTCCTATGCCATTGGTGTCCCTGAGCCCTTGTCGGTCTTTGTTGAGACCTATGGAACTGGAAAGATCCCTGACAAGGAGATCCTTAAAATTGTGAAGGAGAACTTTGACTTCAGGCCGGGAATGATCACCATCAACCTGGATCTCAAGAGGGGTGGCAACAAACGATTCTTGAAGACAGCTGCCTATGGACACTTCGGAAGGGATGACCCTGACTTCACCTGGGAGGTTGTGAAGCCCCTCAAGTGGGAGAAGCCTCAGTCTTAA

Protein Analysis

394

Amino Acids

43.11

Weight (kDa)

5.66

Isoelectric Point (pI)

28.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S-AdoMet_synt_M PF02772 15 - 131 8.6e-44 S-adenosylmethionine synthetase, central domain
S-AdoMet_synt_C PF02773 133 - 274 4.1e-61 S-adenosylmethionine synthetase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 484
Acc36I ACCTGC 2 cut(s) 731, 904
AciI CCGC 2 cut(s) 220, 540
AclWI GGATC 3 cut(s) 976, 991, 1065
AcuI CTGAAG 2 cut(s) 480, 1012
AdeI CACNNNGTG 1 cut(s) 560
AfaI GTAC 3 cut(s) 81, 478, 668
AfiI CCNNNNNNNGG 6 cut(s) 100, 829, 913, 991, 1161, 1162
AflII CTTAAG 1 cut(s) 629
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 2 cut(s) 524, 1090
AjnI CCWGG 4 cut(s) 93, 510, 1053, 1136
AluBI AGCT 3 cut(s) 55, 442, 1097
AluI AGCT 3 cut(s) 55, 442, 1097
Alw26I GTCTC 5 cut(s) 122, 487, 590, 922, 956
AlwI GGATC 3 cut(s) 976, 991, 1065
AoxI GGCC 4 cut(s) 180, 724, 903, 1031
ApaI GGGCCC 1 cut(s) 907
ApeKI GCWGC 4 cut(s) 292, 620, 866, 1097
AspLEI GCGC 2 cut(s) 342, 485
AspS9I GGNCC 6 cut(s) 103, 274, 725, 820, 903, 904
AsuC2I CCSGG 1 cut(s) 1035
AsuHPI GGTGA 6 cut(s) 163, 374, 526, 746, 1036, 1126
AvaII GGWCC 3 cut(s) 103, 274, 820
BaeGI GKGCMC 1 cut(s) 907
BanII GRGCYC 4 cut(s) 302, 793, 907, 945
BauI CACGAG 1 cut(s) 908
BbsI GAAGAC 2 cut(s) 686, 1097
BbvI GCAGC 4 cut(s) 304, 607, 853, 1084
BccI CCATC 3 cut(s) 494, 699, 1055
BcgI CGANNNNNNTGC 2 cut(s) 889, 923
BciT130I CCWGG 4 cut(s) 95, 512, 1055, 1138
BclI TGATCA 1 cut(s) 1041
BcnI CCSGG 1 cut(s) 1035
BcoDI GTCTC 5 cut(s) 122, 487, 590, 922, 956
BfaI CTAG 2 cut(s) 254, 278
BfoI RGCGCY 1 cut(s) 343
BfrI CTTAAG 1 cut(s) 629
BfuAI ACCTGC 2 cut(s) 731, 904
BglII AGATCT 1 cut(s) 66
BisI GCNGC 5 cut(s) 220, 293, 621, 867, 1098
BlsI GCNGC 5 cut(s) 221, 294, 622, 868, 1099
BmcAI AGTACT 2 cut(s) 81, 668
Bme1390I CCNGG 5 cut(s) 95, 512, 1035, 1055, 1138
Bme18I GGWCC 3 cut(s) 103, 274, 820
BmgT120I GGNCC 6 cut(s) 103, 274, 725, 820, 903, 904
BmiI GGNNCC 5 cut(s) 105, 552, 790, 822, 905
BmrFI CCNGG 5 cut(s) 95, 512, 1035, 1055, 1138
BmsI GCATC 4 cut(s) 76, 247, 402, 727
BoxI GACNNNNGTC 1 cut(s) 369
BpiI GAAGAC 2 cut(s) 686, 1097
BpmI CTGGAG 1 cut(s) 116
Bpu10I CCTNAGC 3 cut(s) 312, 419, 939
BpuEI CTTGAG 2 cut(s) 1046, 1142
BpuMI CCSGG 1 cut(s) 1035
BsaBI GATNNNNATC 1 cut(s) 1046
BsaI GGTCTC 3 cut(s) 487, 922, 956
BsaJI CCNNGG 7 cut(s) 177, 322, 367, 510, 793, 828, 1137
Bsc4I CCNNNNNNNGG 6 cut(s) 100, 829, 913, 991, 1161, 1162
Bse1I ACTGG 2 cut(s) 754, 979
Bse8I GATNNNNATC 1 cut(s) 1046
BseBI CCWGG 4 cut(s) 95, 512, 1055, 1138
BseDI CCNNGG 7 cut(s) 177, 322, 367, 510, 793, 828, 1137
BseGI GGATG 2 cut(s) 679, 1126
BseJI GATNNNNATC 1 cut(s) 1046
BseLI CCNNNNNNNGG 6 cut(s) 100, 829, 913, 991, 1161, 1162
BseMII CTCAG 5 cut(s) 326, 396, 482, 651, 930
BseNI ACTGG 2 cut(s) 754, 979
BseRI GAGGAG 1 cut(s) 362
BseSI GKGCMC 1 cut(s) 907
BseXI GCAGC 4 cut(s) 304, 607, 853, 1084
BseYI CCCAGC 1 cut(s) 585
BsgI GTGCAG 1 cut(s) 932
BshFI GGCC 4 cut(s) 182, 726, 905, 1033
BsiSI CCGG 1 cut(s) 1034
BslFI GGGAC 3 cut(s) 54, 641, 920
BslI CCNNNNNNNGG 6 cut(s) 100, 829, 913, 991, 1161, 1162
BsmAI GTCTC 5 cut(s) 122, 487, 590, 922, 956
BsmFI GGGAC 3 cut(s) 54, 641, 920
BsnI GGCC 4 cut(s) 182, 726, 905, 1033
Bso31I GGTCTC 3 cut(s) 487, 922, 956
Bsp120I GGGCCC 1 cut(s) 903
Bsp1286I GDGCHC 4 cut(s) 302, 793, 907, 945
Bsp143I GATC 7 cut(s) 66, 168, 759, 981, 996, 1041, 1057
Bsp19I CCATGG 2 cut(s) 322, 793
BspACI CCGC 2 cut(s) 220, 540
BspANI GGCC 4 cut(s) 182, 726, 905, 1033
BspCNI CTCAG 5 cut(s) 325, 397, 483, 652, 931
BspLI GGNNCC 5 cut(s) 105, 552, 790, 822, 905
BspMI ACCTGC 2 cut(s) 731, 904
BspPI GGATC 3 cut(s) 976, 991, 1065
BspTI CTTAAG 1 cut(s) 629
BspTNI GGTCTC 3 cut(s) 487, 922, 956
BsrI ACTGG 2 cut(s) 754, 979
BssECI CCNNGG 7 cut(s) 177, 322, 367, 510, 793, 828, 1137
BssMI GATC 7 cut(s) 66, 168, 759, 981, 996, 1041, 1057
BssSI CACGAG 1 cut(s) 908
BssT1I CCWWGG 5 cut(s) 177, 322, 367, 793, 828
Bst2BI CACGAG 1 cut(s) 908
Bst2UI CCWGG 4 cut(s) 95, 512, 1055, 1138
Bst4CI ACNGT 3 cut(s) 520, 571, 601
BstAFI CTTAAG 1 cut(s) 629
BstC8I GCNNGC 3 cut(s) 91, 864, 898
BstDEI CTNAG 7 cut(s) 312, 405, 419, 491, 660, 939, 1173
BstDSI CCRYGG 2 cut(s) 322, 793
BstEII GGTNACC 1 cut(s) 362
BstENI CCTNNNNNAGG 2 cut(s) 98, 911
BstF5I GGATG 2 cut(s) 679, 1126
BstH2I RGCGCY 1 cut(s) 343
BstHHI GCGC 2 cut(s) 342, 485
BstKTI GATC 7 cut(s) 69, 171, 762, 984, 999, 1044, 1060
BstMAI GTCTC 5 cut(s) 122, 487, 590, 922, 956
BstMBI GATC 7 cut(s) 66, 168, 759, 981, 996, 1041, 1057
BstMWI GCNNNNNNNGC 1 cut(s) 902
BstNI CCWGG 4 cut(s) 95, 512, 1055, 1138
BstNSI RCATGY 4 cut(s) 135, 219, 379, 641
BstPAI GACNNNNGTC 1 cut(s) 369
BstPI GGTNACC 1 cut(s) 362
BstSCI CCNGG 5 cut(s) 93, 510, 1033, 1053, 1136
BstSLI GKGCMC 1 cut(s) 907
BstV1I GCAGC 4 cut(s) 304, 607, 853, 1084
BstV2I GAAGAC 2 cut(s) 686, 1097
BstX2I RGATCY 4 cut(s) 66, 981, 996, 1057
BstXI CCANNNNNNTGG 2 cut(s) 800, 1054
BstYI RGATCY 4 cut(s) 66, 981, 996, 1057
BsuRI GGCC 4 cut(s) 182, 726, 905, 1033
BtgI CCRYGG 2 cut(s) 322, 793
BtsCI GGATG 2 cut(s) 679, 1126
BtsIMutI CAGTG 3 cut(s) 390, 456, 567
BveI ACCTGC 2 cut(s) 731, 904
Cac8I GCNNGC 3 cut(s) 91, 864, 898
CfoI GCGC 2 cut(s) 342, 485
Cfr13I GGNCC 6 cut(s) 103, 274, 725, 820, 903, 904
CseI GACGC 2 cut(s) 83, 762
Csp6I GTAC 3 cut(s) 80, 477, 667
CspCI CAANNNNNGTGG 2 cut(s) 1051, 1086
CviQI GTAC 3 cut(s) 80, 477, 667
DdeI CTNAG 7 cut(s) 312, 405, 419, 491, 660, 939, 1173
DpnI GATC 7 cut(s) 68, 170, 761, 983, 998, 1043, 1059
DpnII GATC 7 cut(s) 66, 168, 759, 981, 996, 1041, 1057
DraIII CACNNNGTG 1 cut(s) 560
Eco130I CCWWGG 5 cut(s) 177, 322, 367, 793, 828
Eco24I GRGCYC 4 cut(s) 302, 793, 907, 945
Eco31I GGTCTC 3 cut(s) 487, 922, 956
Eco47I GGWCC 3 cut(s) 103, 274, 820
Eco57I CTGAAG 2 cut(s) 480, 1012
Eco91I GGTNACC 1 cut(s) 362
EcoNI CCTNNNNNAGG 2 cut(s) 98, 911
EcoO109I RGGNCCY 5 cut(s) 103, 274, 820, 903, 904
EcoO65I GGTNACC 1 cut(s) 362
EcoRII CCWGG 4 cut(s) 93, 510, 1053, 1136
EcoT14I CCWWGG 5 cut(s) 177, 322, 367, 793, 828
EcoT38I GRGCYC 4 cut(s) 302, 793, 907, 945
ErhI CCWWGG 5 cut(s) 177, 322, 367, 793, 828
FalI AAGNNNNNCTT 6 cut(s) 671, 703, 832, 864, 1004, 1036
FaqI GGGAC 3 cut(s) 54, 641, 920
FbaI TGATCA 1 cut(s) 1041
Fnu4HI GCNGC 5 cut(s) 220, 293, 621, 867, 1098
FokI GGATG 2 cut(s) 686, 1133
FriOI GRGCYC 4 cut(s) 302, 793, 907, 945
Fsp4HI GCNGC 5 cut(s) 220, 293, 621, 867, 1098
FspBI CTAG 2 cut(s) 254, 278
FspI TGCGCA 1 cut(s) 484
GlaI GCGC 2 cut(s) 341, 484
GluI GCNGC 5 cut(s) 220, 293, 621, 867, 1098
GsaI CCCAGC 1 cut(s) 589
GsuI CTGGAG 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 343
HaeIII GGCC 4 cut(s) 182, 726, 905, 1033
HapII CCGG 1 cut(s) 1034
HgaI GACGC 2 cut(s) 83, 762
HhaI GCGC 2 cut(s) 342, 485
Hin6I GCGC 2 cut(s) 340, 483
HinP1I GCGC 2 cut(s) 340, 483
HincII GTYRAC 2 cut(s) 34, 283
HindII GTYRAC 2 cut(s) 34, 283
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 2 cut(s) 26, 1083
HpaII CCGG 1 cut(s) 1034
HphI GGTGA 6 cut(s) 163, 374, 526, 746, 1036, 1126
Hpy166II GTNNAC 4 cut(s) 34, 283, 565, 835
Hpy188I TCNGA 5 cut(s) 25, 73, 164, 241, 1115
Hpy188III TCNNGA 5 cut(s) 254, 466, 813, 1063, 1087
Hpy8I GTNNAC 4 cut(s) 34, 283, 565, 835
HpyAV CCTTC 3 cut(s) 530, 1006, 1110
HpyCH4III ACNGT 3 cut(s) 520, 571, 601
HpyCH4V TGCA 6 cut(s) 135, 270, 434, 740, 884, 913
HpyF10VI GCNNNNNNNGC 1 cut(s) 902
HpyF3I CTNAG 7 cut(s) 312, 405, 419, 491, 660, 939, 1173
HspAI GCGC 2 cut(s) 340, 483
Ksp22I TGATCA 1 cut(s) 1041
Kzo9I GATC 7 cut(s) 66, 168, 759, 981, 996, 1041, 1057
LmnI GCTCC 3 cut(s) 97, 634, 788
Lsp1109I GCAGC 4 cut(s) 304, 607, 853, 1084
LweI GCATC 4 cut(s) 76, 247, 402, 727
MaeI CTAG 2 cut(s) 254, 278
MaeIII GTNAC 6 cut(s) 209, 326, 362, 371, 514, 601
MalI GATC 7 cut(s) 68, 170, 761, 983, 998, 1043, 1059
MboI GATC 7 cut(s) 66, 168, 759, 981, 996, 1041, 1057
MboII GAAGA 5 cut(s) 211, 481, 679, 691, 1102
MflI RGATCY 4 cut(s) 66, 981, 996, 1057
MhlI GDGCHC 4 cut(s) 302, 793, 907, 945
MluCI AATT 1 cut(s) 1005
MnlI CCTC 9 cut(s) 31, 340, 712, 738, 917, 1059, 1135, 1166, 1182
MseI TTAA 5 cut(s) 630, 645, 696, 1002, 1180
MslI CAYNNNNRTG 3 cut(s) 152, 735, 798
MspA1I CMGCKG 1 cut(s) 1097
MspCI CTTAAG 1 cut(s) 629
MspI CCGG 1 cut(s) 1034
MspR9I CCNGG 5 cut(s) 95, 512, 1035, 1055, 1138
MvaI CCWGG 4 cut(s) 95, 512, 1055, 1138
MwoI GCNNNNNNNGC 1 cut(s) 902
NciI CCSGG 1 cut(s) 1035
NcoI CCATGG 2 cut(s) 322, 793
NdeII GATC 7 cut(s) 66, 168, 759, 981, 996, 1041, 1057
NlaIV GGNNCC 5 cut(s) 105, 552, 790, 822, 905
NmuCI GTSAC 5 cut(s) 209, 326, 362, 371, 514
NsbI TGCGCA 1 cut(s) 484
NspI RCATGY 4 cut(s) 135, 219, 379, 641
PciI ACATGT 1 cut(s) 375
PfeI GAWTC 2 cut(s) 26, 1083
PkrI GCNGC 5 cut(s) 221, 294, 622, 868, 1099
PpuMI RGGWCCY 3 cut(s) 103, 274, 820
PscI ACATGT 1 cut(s) 375
PshAI GACNNNNGTC 1 cut(s) 369
Psp5II RGGWCCY 3 cut(s) 103, 274, 820
Psp6I CCWGG 4 cut(s) 93, 510, 1053, 1136
PspEI GGTNACC 1 cut(s) 362
PspFI CCCAGC 1 cut(s) 585
PspGI CCWGG 4 cut(s) 93, 510, 1053, 1136
PspN4I GGNNCC 5 cut(s) 105, 552, 790, 822, 905
PspOMI GGGCCC 1 cut(s) 903
PspPI GGNCC 6 cut(s) 103, 274, 725, 820, 903, 904
PspPPI RGGWCCY 3 cut(s) 103, 274, 820
PsuI RGATCY 4 cut(s) 66, 981, 996, 1057
PvuII CAGCTG 1 cut(s) 1097
RsaI GTAC 3 cut(s) 81, 478, 668
RsaNI GTAC 3 cut(s) 80, 477, 667
RseI CAYNNNNRTG 3 cut(s) 152, 735, 798
SaqAI TTAA 5 cut(s) 630, 645, 696, 1002, 1180
SatI GCNGC 5 cut(s) 220, 293, 621, 867, 1098
Sau3AI GATC 7 cut(s) 66, 168, 759, 981, 996, 1041, 1057
Sau96I GGNCC 6 cut(s) 103, 274, 725, 820, 903, 904
ScaI AGTACT 2 cut(s) 81, 668
ScrFI CCNGG 5 cut(s) 95, 512, 1035, 1055, 1138
SduI GDGCHC 4 cut(s) 302, 793, 907, 945
SfaNI GCATC 4 cut(s) 76, 247, 402, 727
SinI GGWCC 3 cut(s) 103, 274, 820
SmiMI CAYNNNNRTG 3 cut(s) 152, 735, 798
SmlI CTYRAG 3 cut(s) 629, 1061, 1157
SmoI CTYRAG 3 cut(s) 629, 1061, 1157
Sse9I AATT 1 cut(s) 1005
SsiI CCGC 2 cut(s) 220, 540
SspMI CTAG 2 cut(s) 254, 278
StyD4I CCNGG 5 cut(s) 93, 510, 1033, 1053, 1136
StyI CCWWGG 5 cut(s) 177, 322, 367, 793, 828
TaaI ACNGT 3 cut(s) 520, 571, 601
TaqII GACCGA 1 cut(s) 940
TasI AATT 1 cut(s) 1005
TatI WGTACW 2 cut(s) 79, 666
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 2 cut(s) 26, 1083
Tru1I TTAA 5 cut(s) 630, 645, 696, 1002, 1180
Tru9I TTAA 5 cut(s) 630, 645, 696, 1002, 1180
TscAI CASTG 3 cut(s) 397, 463, 574
TseFI GTSAC 5 cut(s) 209, 326, 362, 371, 514
TseI GCWGC 4 cut(s) 292, 620, 866, 1097
Tsp45I GTSAC 5 cut(s) 209, 326, 362, 371, 514
TspDTI ATGAA 2 cut(s) 411, 549
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 3 cut(s) 397, 463, 574
Vha464I CTTAAG 1 cut(s) 629
VpaK11BI GGWCC 3 cut(s) 103, 274, 820
XagI CCTNNNNNAGG 2 cut(s) 98, 911
XbaI TCTAGA 1 cut(s) 253
XceI RCATGY 4 cut(s) 135, 219, 379, 641
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XspI CTAG 2 cut(s) 254, 278
ZrmI AGTACT 2 cut(s) 81, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.