Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002178

Physical Location & Seq

Genomic Coordinates Reverse (-)

20523739 .. 20524525

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0224100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAACTTCAGCAGCGTCGAAAATCGTGGTAAACCAACGAGTTTTATTGCAAGGCCGCATTCACAGCTGCAGGGTCCTAGGCCTGCAGCTCTTACAGTGAGCAAGAATTCGAAGAAGATGATGGCGAAGAAGAAAACGAACCCACAGAATCCGGTTATAGTGTATCTGATATCGCCCAAGATTATTCATGTACAACCTGAGGAGTTCATGGGTCTGGTGCAACGCCTTACCGGAAATCATCAAGGACCGCGTAGGGTTAATAATATTGTCGCTAATTCCCAGTCTTGCTCTACTTCTAGAAATTCTGGTGTGAGCCAAGGAGATCAGTATTTCATGGAGAGCAGCCAACAGAAGCTGATCAGCAGTAGGGACGACTATTCTGATGTGCCCTTTGGAATACCTACTGCAACAACTAATTCCAACTTTACTGAGATATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004478 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016740 GO:0016765 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 ko01230 map00270 map01100 map01110 map01230

Pfam Domains

Protein Families

S-AdoMet_synt_C S-AdoMet_synt_M S-AdoMet_synt_N

Protein Analysis

146

Amino Acids

16.2

Weight (kDa)

10.0

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	57 - 81	2.1e-08	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02500 AT1G02500 AT4G01850 AT4G01850
fragaria_vesca	FvH4_1g26460 FvH4_1g26460 FvH4_1g26460 FvH4_6g08370 FvH4_6g08370 FvH4_6g08370 FvH4_6g08370
malus_domestica	MD04G1187700.v1.1 MD09G1292700.v1.1 MD12G1201100.v1.1 MD17G1283400.v1.1
prunus_persica	Prupe.3G004000_v2.0.a1 Prupe.6G306200_v2.0.a1
pyrus_communis	pycom04g16600 pycom09g19680 pycom12g18740 pycom17g27940
rosa_chinensis	RchiOBHm_Chr3g0458271 RchiOBHm_Chr3g0486231
rosa_laevigata	RLG00000023092 RLG00000025170
rosa_multiflora	Rmu_sc0007338.1_g000005 Rmu_sc0007661.1_g000004 Rmu_sc0009883.1_g000007
rosa_roxburghii	Rroxscaffold_6G00395970 Rroxscaffold_6G00421180
rosa_rugosa	Rorug03G0025700 Rorug03G0025700 Rorug03G0224100
rosa_samantha	Rh3AG086500 Rh3AG274100 Rh3BG089200 Rh3BG309400 Rh3CG089900 Rh3CG307700 Rh3DG090300 Rh3DG304100
rosa_wichuraiana	Rw3G007340 Rw3G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	250
AciI	CCGC	2 cut(s)	56, 248
AcsI	RAATTY	2 cut(s)	106, 301
AfaI	GTAC	1 cut(s)	192
AluBI	AGCT	3 cut(s)	67, 89, 355
AluI	AGCT	3 cut(s)	67, 89, 355
AlwNI	CAGNNNCTG	1 cut(s)	355
AoxI	GGCC	2 cut(s)	53, 80
ApeKI	GCWGC	4 cut(s)	12, 67, 86, 342
ApoI	RAATTY	2 cut(s)	106, 301
AspA2I	CCTAGG	1 cut(s)	77
AspS9I	GGNCC	2 cut(s)	74, 245
AsuII	TTCGAA	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	74, 245
AvrII	CCTAGG	1 cut(s)	77
AxyI	CCTNAGG	1 cut(s)	198
BaeGI	GKGCMC	1 cut(s)	390
BbvI	GCAGC	4 cut(s)	24, 54, 98, 354
BccI	CCATC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	357
BfaI	CTAG	2 cut(s)	78, 297
BfmI	CTRYAG	2 cut(s)	68, 84
BisI	GCNGC	5 cut(s)	13, 56, 68, 87, 343
BlnI	CCTAGG	1 cut(s)	77
BlsI	GCNGC	5 cut(s)	14, 57, 69, 88, 344
Bme18I	GGWCC	2 cut(s)	74, 245
BmgT120I	GGNCC	2 cut(s)	74, 245
BmiI	GGNNCC	1 cut(s)	75
BmrI	ACTGGG	1 cut(s)	274
BmuI	ACTGGG	1 cut(s)	274
Bpu14I	TTCGAA	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	77, 316
BsaWI	WCCGGW	2 cut(s)	151, 230
Bse1I	ACTGG	1 cut(s)	280
Bse21I	CCTNAGG	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	77, 316
BseMII	CTCAG	2 cut(s)	189, 420
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	215
BseSI	GKGCMC	1 cut(s)	390
BseXI	GCAGC	4 cut(s)	24, 54, 98, 354
Bsh1236I	CGCG	1 cut(s)	250
BshFI	GGCC	2 cut(s)	55, 82
BsiSI	CCGG	2 cut(s)	152, 231
BslFI	GGGAC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	55, 82
Bsp119I	TTCGAA	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp1407I	TGTACA	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	322, 357
BspACI	CCGC	2 cut(s)	56, 248
BspANI	GGCC	2 cut(s)	55, 82
BspCNI	CTCAG	2 cut(s)	190, 421
BspFNI	CGCG	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	2 cut(s)	72, 88
BspT104I	TTCGAA	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	77, 316
BssMI	GATC	2 cut(s)	322, 357
BssT1I	CCWWGG	2 cut(s)	77, 316
Bst4CI	ACNGT	1 cut(s)	97
BstAUI	TGTACA	1 cut(s)	190
BstBI	TTCGAA	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	198, 429
BstFNI	CGCG	1 cut(s)	250
BstKTI	GATC	2 cut(s)	325, 360
BstMBI	GATC	2 cut(s)	322, 357
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstSFI	CTRYAG	2 cut(s)	68, 84
BstSLI	GKGCMC	1 cut(s)	390
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	4 cut(s)	24, 54, 98, 354
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	55, 82
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	84
CaiI	CAGNNNCTG	1 cut(s)	355
Cfr13I	GGNCC	2 cut(s)	74, 245
CseI	GACGC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	3 cut(s)	188, 208, 334
CviJI	RGCY	7 cut(s)	55, 67, 82, 89, 315, 345, 355
CviKI_1	RGCY	7 cut(s)	55, 67, 82, 89, 315, 345, 355
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	2 cut(s)	198, 429
DpnI	GATC	2 cut(s)	324, 359
DpnII	GATC	2 cut(s)	322, 357
Eco130I	CCWWGG	2 cut(s)	77, 316
Eco147I	AGGCCT	1 cut(s)	82
Eco32I	GATATC	1 cut(s)	171
Eco47I	GGWCC	2 cut(s)	74, 245
Eco81I	CCTNAGG	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	106
EcoRV	GATATC	1 cut(s)	171
EcoT14I	CCWWGG	2 cut(s)	77, 316
ErhI	CCWWGG	2 cut(s)	77, 316
FaeI	CATG	3 cut(s)	191, 211, 337
FaiI	YATR	4 cut(s)	158, 189, 209, 335
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	3 cut(s)	187, 207, 333
FbaI	TGATCA	1 cut(s)	357
Fnu4HI	GCNGC	5 cut(s)	13, 56, 68, 87, 343
Fsp4HI	GCNGC	5 cut(s)	13, 56, 68, 87, 343
FspBI	CTAG	2 cut(s)	78, 297
GluI	GCNGC	5 cut(s)	13, 56, 68, 87, 343
HaeIII	GGCC	2 cut(s)	55, 82
HapII	CCGG	2 cut(s)	152, 231
HgaI	GACGC	1 cut(s)	4
Hin1II	CATG	3 cut(s)	191, 211, 337
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	2 cut(s)	152, 231
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	2 cut(s)	168, 382
Hpy188III	TCNNGA	1 cut(s)	297
Hpy8I	GTNNAC	1 cut(s)	32
Hpy99I	CGWCG	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	5 cut(s)	50, 70, 86, 220, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	2 cut(s)	198, 429
Hsp92II	CATG	3 cut(s)	191, 211, 337
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	2 cut(s)	322, 357
LpnPI	CCDG	8 cut(s)	56, 96, 165, 200, 210, 244, 291, 293
Lsp1109I	GCAGC	4 cut(s)	24, 54, 98, 354
MaeI	CTAG	2 cut(s)	78, 297
MalI	GATC	2 cut(s)	324, 359
MboI	GATC	2 cut(s)	322, 357
MboII	GAAGA	4 cut(s)	124, 127, 139, 142
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	4 cut(s)	106, 274, 301, 415
MnlI	CCTC	1 cut(s)	193
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	2 cut(s)	152, 231
Mva1269I	GAATGC	1 cut(s)	58
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	2 cut(s)	322, 357
NlaIII	CATG	3 cut(s)	191, 211, 337
NlaIV	GGNNCC	1 cut(s)	75
NspV	TTCGAA	1 cut(s)	110
PceI	AGGCCT	1 cut(s)	82
PctI	GAATGC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	148
PkrI	GCNGC	5 cut(s)	14, 57, 69, 88, 344
PpuMI	RGGWCCY	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	2 cut(s)	74, 245
PspPPI	RGGWCCY	1 cut(s)	74
PstI	CTGCAG	2 cut(s)	72, 88
PstNI	CAGNNNCTG	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	5 cut(s)	13, 56, 68, 87, 343
Sau3AI	GATC	2 cut(s)	322, 357
Sau96I	GGNCC	2 cut(s)	74, 245
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	5 cut(s)	69, 91, 199, 357, 403
SfcI	CTRYAG	2 cut(s)	68, 84
SfuI	TTCGAA	1 cut(s)	110
SinI	GGWCC	2 cut(s)	74, 245
Sse9I	AATT	4 cut(s)	106, 274, 301, 415
SseBI	AGGCCT	1 cut(s)	82
SsiI	CCGC	2 cut(s)	56, 248
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	2 cut(s)	78, 297
StuI	AGGCCT	1 cut(s)	82
StyI	CCWWGG	2 cut(s)	77, 316
TaaI	ACNGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	18, 110
TasI	AATT	4 cut(s)	106, 274, 301, 415
TatI	WGTACW	1 cut(s)	190
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	102
TseI	GCWGC	4 cut(s)	12, 67, 86, 342
TspDTI	ATGAA	4 cut(s)	17, 176, 196, 322
TspRI	CASTG	1 cut(s)	102
VpaK11BI	GGWCC	2 cut(s)	74, 245
XapI	RAATTY	2 cut(s)	106, 301
XbaI	TCTAGA	1 cut(s)	296
XmaJI	CCTAGG	1 cut(s)	77
XspI	CTAG	2 cut(s)	78, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.