Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002178

Physical Location & Seq

Genomic Coordinates Reverse (-)

27626285 .. 27628862

Gene Structure 2578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G306200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGACACTTTCCTGTTTACTTCTGAGTCTGTGAATGAGGGACACCCTGATAAACTCTGTGATCAGATTTCTGATGCAGTGCTTGATGCCTGCCTTGAGCAAGATCCCGACAGCAAAGTTGCCTGTGAGACTTGCACCAAGACCAACATGGTCATGGTCTTTGGAGAGATTACAACCAAAGCCAAAGTGGACTATGAGAAAATTGTACGTGACACCTGCCGTACGATTGGATTTGTTTCAGATCATGTTGGCCTTGATGCTGACAACTGCAAGGTCTTGGTTAACATTGAGCAACAGAGCCCTGATATCGCTCAGGGTGTCCATGGCCACCTCACCAAGAGGCCTGAGGAAATTGGTGCTGGAGACCAGGGTCACATGTTTGGTTATGCCACTGATGAGACCACTGAGCTTATGCCTCTAAGCCATGTCCTTGCTACCAAGCTTGGTGCCCGTCTCACCGAAGTTCGCAAGAATGGGACCTTGCCATGGTTGAGACCTGATGGCAAAACACAAGTCACTGTTGAATACTACAATGACCATGGGGCTATGGTTCCAATCCGTGTCCACACTGTTCTCATTTCTACTCAGCATGATGAAACTGTTACTAATGACGAAATTGCTACTGACCTCAAAGAACATGTCATTAAGCCTGTTGTTCCTGAGAAGTACTTAGATGAGAAGACTATTTTCCATCTTAACCCATCAGGTCGGTTTGTCATCGGTGGGCCTCACGGTGATGCAGGTCTCACTGGCCGCAAAATCATCATTGACACCTATGGTGGTTGGGGAGCCCATGGTGGTGGTGCCTTCTCTGGCAAGGACCCTACCAAGGTAGACAGGAGTGGTGCCTACATTGTTAGGCAGGCTGCTAAGAGCATTGTTGCCAGTGGTCTTGCTCGCAGGTGCATAGTGCAGGTCTCATATGCCATCGGTGTTCCTGAGCCACTATCAGTGTTTGTTGACAGTTATGGCACCGGAAAGATTCCGGACAAGGAGATTCTGAAAATAGTAAAGGAGAGCTTTGATTTCAGGCCTGGAATGATTGCCATAAATTTGGATCTCAAGAGGGGTAGGTATTTGAAAACAGCTGCTTATGGACACTTTGGTAGAGATGATCCTGACTTTTCATGGGAAGTGGTGAAGCCCTTGAAGTGGGAAAAGCCTCAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004478 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016740 GO:0016765 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 ko01230 map00270 map01100 map01110 map01230

Pfam Domains

Protein Families

S-AdoMet_synt_C S-AdoMet_synt_M S-AdoMet_synt_N

Protein Analysis

391

Amino Acids

42.94

Weight (kDa)

5.72

Isoelectric Point (pI)

25.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02500 AT1G02500 AT4G01850 AT4G01850
fragaria_vesca	FvH4_1g26460 FvH4_1g26460 FvH4_1g26460 FvH4_6g08370 FvH4_6g08370 FvH4_6g08370 FvH4_6g08370
malus_domestica	MD04G1187700.v1.1 MD09G1292700.v1.1 MD12G1201100.v1.1 MD17G1283400.v1.1
prunus_persica	Prupe.3G004000_v2.0.a1 Prupe.6G306200_v2.0.a1
pyrus_communis	pycom04g16600 pycom09g19680 pycom12g18740 pycom17g27940
rosa_chinensis	RchiOBHm_Chr3g0458271 RchiOBHm_Chr3g0486231
rosa_laevigata	RLG00000023092 RLG00000025170
rosa_multiflora	Rmu_sc0007338.1_g000005 Rmu_sc0007661.1_g000004 Rmu_sc0009883.1_g000007
rosa_roxburghii	Rroxscaffold_6G00395970 Rroxscaffold_6G00421180
rosa_rugosa	Rorug03G0025700 Rorug03G0025700 Rorug03G0224100
rosa_samantha	Rh3AG086500 Rh3AG274100 Rh3BG089200 Rh3BG309400 Rh3CG089900 Rh3CG307700 Rh3DG090300 Rh3DG304100
rosa_wichuraiana	Rw3G007340 Rw3G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	224, 891
Acc36I	ACCTGC	4 cut(s)	224, 731, 891, 904
AccB1I	GGYRCC	4 cut(s)	446, 803, 845, 971
AccI	GTMKAC	1 cut(s)	834
AccIII	TCCGGA	1 cut(s)	985
AciI	CCGC	1 cut(s)	754
AclWI	GGATC	3 cut(s)	98, 1065, 1109
AcoI	YGGCCR	2 cut(s)	325, 751
AcsI	RAATTY	1 cut(s)	1051
AfaI	GTAC	3 cut(s)	207, 223, 668
AfiI	CCNNNNNNNGG	3 cut(s)	486, 829, 1152
AflIII	ACRYGT	2 cut(s)	375, 637
AgsI	TTSAA	3 cut(s)	524, 1081, 1150
AjnI	CCWGG	2 cut(s)	366, 1033
AluBI	AGCT	4 cut(s)	409, 442, 1020, 1088
AluI	AGCT	4 cut(s)	409, 442, 1020, 1088
Alw26I	GTCTC	7 cut(s)	122, 357, 392, 458, 487, 749, 922
AlwI	GGATC	3 cut(s)	98, 1065, 1109
Aor13HI	TCCGGA	1 cut(s)	985
AoxI	GGCC	6 cut(s)	250, 325, 341, 725, 751, 1031
ApeKI	GCWGC	2 cut(s)	866, 1088
ApoI	RAATTY	1 cut(s)	1051
ArsI	GACNNNNNNTTYG	4 cut(s)	498, 530, 624, 656
AspS9I	GGNCC	3 cut(s)	477, 725, 820
AsuHPI	GGTGA	4 cut(s)	325, 448, 746, 1150
AvaII	GGWCC	2 cut(s)	477, 820
AxyI	CCTNAGG	1 cut(s)	345
BaeGI	GKGCMC	1 cut(s)	451
BalI	TGGCCA	1 cut(s)	327
BanI	GGYRCC	4 cut(s)	446, 803, 845, 971
BanII	GRGCYC	2 cut(s)	302, 793
BbsI	GAAGAC	1 cut(s)	686
BbvI	GCAGC	2 cut(s)	853, 1075
BccI	CCATC	4 cut(s)	494, 699, 709, 935
BceAI	ACGGC	1 cut(s)	204
BciT130I	CCWGG	2 cut(s)	368, 1035
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	7 cut(s)	122, 357, 392, 458, 487, 749, 922
BfuAI	ACCTGC	4 cut(s)	224, 731, 891, 904
BisI	GCNGC	3 cut(s)	754, 867, 1089
BlsI	GCNGC	3 cut(s)	755, 868, 1090
BmcAI	AGTACT	1 cut(s)	668
Bme1390I	CCNGG	2 cut(s)	368, 1035
Bme18I	GGWCC	2 cut(s)	477, 820
BmgT120I	GGNCC	3 cut(s)	477, 725, 820
BmiI	GGNNCC	8 cut(s)	448, 478, 552, 790, 805, 822, 847, 973
BmrFI	CCNGG	2 cut(s)	368, 1035
BmsI	GCATC	4 cut(s)	64, 76, 247, 727
BoxI	GACNNNNGTC	1 cut(s)	369
BpiI	GAAGAC	1 cut(s)	686
BpmI	CTGGAG	1 cut(s)	381
Bpu10I	CCTNAGC	2 cut(s)	312, 939
BpuEI	CTTGAG	3 cut(s)	116, 1046, 1149
BsaAI	YACGTR	1 cut(s)	209
BsaI	GGTCTC	5 cut(s)	357, 392, 487, 749, 922
BsaJI	CCNNGG	6 cut(s)	322, 367, 485, 538, 793, 828
BsaWI	WCCGGW	2 cut(s)	974, 985
Bsc4I	CCNNNNNNNGG	3 cut(s)	486, 829, 1152
Bse1I	ACTGG	2 cut(s)	754, 885
Bse21I	CCTNAGG	1 cut(s)	345
BseAI	TCCGGA	1 cut(s)	985
BseBI	CCWGG	2 cut(s)	368, 1035
BseDI	CCNNGG	6 cut(s)	322, 367, 485, 538, 793, 828
BseLI	CCNNNNNNNGG	3 cut(s)	486, 829, 1152
BseMII	CTCAG	7 cut(s)	15, 326, 336, 396, 599, 651, 930
BseNI	ACTGG	2 cut(s)	754, 885
BseSI	GKGCMC	1 cut(s)	451
BseXI	GCAGC	2 cut(s)	853, 1075
BsgI	GTGCAG	1 cut(s)	932
BshFI	GGCC	6 cut(s)	252, 327, 343, 727, 753, 1033
BshNI	GGYRCC	4 cut(s)	446, 803, 845, 971
BsiSI	CCGG	2 cut(s)	975, 986
BsiWI	CGTACG	1 cut(s)	221
BslFI	GGGAC	2 cut(s)	54, 490
BslI	CCNNNNNNNGG	3 cut(s)	486, 829, 1152
BsmAI	GTCTC	7 cut(s)	122, 357, 392, 458, 487, 749, 922
BsmBI	CGTCTC	1 cut(s)	458
BsmFI	GGGAC	2 cut(s)	54, 490
BsnI	GGCC	6 cut(s)	252, 327, 343, 727, 753, 1033
Bso31I	GGTCTC	5 cut(s)	357, 392, 487, 749, 922
Bsp1286I	GDGCHC	3 cut(s)	302, 451, 793
Bsp13I	TCCGGA	1 cut(s)	985
Bsp143I	GATC	5 cut(s)	61, 103, 241, 1057, 1114
Bsp19I	CCATGG	4 cut(s)	322, 485, 538, 793
BspACI	CCGC	1 cut(s)	754
BspANI	GGCC	6 cut(s)	252, 327, 343, 727, 753, 1033
BspCNI	CTCAG	7 cut(s)	16, 325, 337, 397, 598, 652, 931
BspEI	TCCGGA	1 cut(s)	985
BspLI	GGNNCC	8 cut(s)	448, 478, 552, 790, 805, 822, 847, 973
BspMI	ACCTGC	4 cut(s)	224, 731, 891, 904
BspPI	GGATC	3 cut(s)	98, 1065, 1109
BspT107I	GGYRCC	4 cut(s)	446, 803, 845, 971
BspTNI	GGTCTC	5 cut(s)	357, 392, 487, 749, 922
BsrI	ACTGG	2 cut(s)	754, 885
BssECI	CCNNGG	6 cut(s)	322, 367, 485, 538, 793, 828
BssMI	GATC	5 cut(s)	61, 103, 241, 1057, 1114
BssT1I	CCWWGG	5 cut(s)	322, 485, 538, 793, 828
Bst2UI	CCWGG	2 cut(s)	368, 1035
Bst4CI	ACNGT	5 cut(s)	520, 571, 601, 734, 965
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	3 cut(s)	91, 864, 898
BstDSI	CCRYGG	4 cut(s)	322, 485, 538, 793
BstKTI	GATC	5 cut(s)	64, 106, 244, 1060, 1117
BstMAI	GTCTC	7 cut(s)	122, 357, 392, 458, 487, 749, 922
BstMBI	GATC	5 cut(s)	61, 103, 241, 1057, 1114
BstNI	CCWGG	2 cut(s)	368, 1035
BstNSI	RCATGY	2 cut(s)	379, 641
BstPAI	GACNNNNGTC	1 cut(s)	369
BstSCI	CCNGG	2 cut(s)	366, 1033
BstSLI	GKGCMC	1 cut(s)	451
BstV1I	GCAGC	2 cut(s)	853, 1075
BstV2I	GAAGAC	1 cut(s)	686
BstX2I	RGATCY	2 cut(s)	103, 1057
BstXI	CCANNNNNNTGG	2 cut(s)	800, 1054
BstYI	RGATCY	2 cut(s)	103, 1057
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	6 cut(s)	252, 327, 343, 727, 753, 1033
BtgI	CCRYGG	4 cut(s)	322, 485, 538, 793
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	8 cut(s)	84, 390, 402, 516, 567, 747, 892, 957
BveI	ACCTGC	4 cut(s)	224, 731, 891, 904
Cac8I	GCNNGC	3 cut(s)	91, 864, 898
Cfr13I	GGNCC	3 cut(s)	477, 725, 820
Csp6I	GTAC	3 cut(s)	206, 222, 667
CviQI	GTAC	3 cut(s)	206, 222, 667
DpnI	GATC	5 cut(s)	63, 105, 243, 1059, 1116
DpnII	GATC	5 cut(s)	61, 103, 241, 1057, 1114
EaeI	YGGCCR	2 cut(s)	325, 751
Eco130I	CCWWGG	5 cut(s)	322, 485, 538, 793, 828
Eco147I	AGGCCT	2 cut(s)	343, 1033
Eco24I	GRGCYC	2 cut(s)	302, 793
Eco31I	GGTCTC	5 cut(s)	357, 392, 487, 749, 922
Eco32I	GATATC	1 cut(s)	307
Eco47I	GGWCC	2 cut(s)	477, 820
Eco81I	CCTNAGG	1 cut(s)	345
EcoO109I	RGGNCCY	2 cut(s)	477, 820
EcoRII	CCWGG	2 cut(s)	366, 1033
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	5 cut(s)	322, 485, 538, 793, 828
EcoT38I	GRGCYC	2 cut(s)	302, 793
ErhI	CCWWGG	5 cut(s)	322, 485, 538, 793, 828
Esp3I	CGTCTC	1 cut(s)	458
FalI	AAGNNNNNCTT	2 cut(s)	1004, 1036
FaqI	GGGAC	2 cut(s)	54, 490
FauNDI	CATATG	1 cut(s)	922
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	834
Fnu4HI	GCNGC	3 cut(s)	754, 867, 1089
FriOI	GRGCYC	2 cut(s)	302, 793
Fsp4HI	GCNGC	3 cut(s)	754, 867, 1089
GluI	GCNGC	3 cut(s)	754, 867, 1089
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	6 cut(s)	252, 327, 343, 727, 753, 1033
HapII	CCGG	2 cut(s)	975, 986
HincII	GTYRAC	2 cut(s)	283, 961
HindII	GTYRAC	2 cut(s)	283, 961
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	3 cut(s)	26, 982, 997
HpaI	GTTAAC	1 cut(s)	283
HpaII	CCGG	2 cut(s)	975, 986
HphI	GGTGA	4 cut(s)	325, 448, 746, 1150
Hpy166II	GTNNAC	6 cut(s)	18, 190, 283, 565, 835, 961
Hpy188I	TCNGA	5 cut(s)	25, 66, 73, 241, 1002
Hpy188III	TCNNGA	7 cut(s)	107, 659, 938, 986, 1063, 1118, 1166
Hpy8I	GTNNAC	6 cut(s)	18, 190, 283, 565, 835, 961
HpyAV	CCTTC	1 cut(s)	817
HpyCH4III	ACNGT	5 cut(s)	520, 571, 601, 734, 965
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	6 cut(s)	77, 135, 270, 740, 906, 913
HpySE526I	ACGT	1 cut(s)	208
Kpn2I	TCCGGA	1 cut(s)	985
Ksp22I	TGATCA	1 cut(s)	61
KspAI	GTTAAC	1 cut(s)	283
Kzo9I	GATC	5 cut(s)	61, 103, 241, 1057, 1114
LmnI	GCTCC	1 cut(s)	788
Lsp1109I	GCAGC	2 cut(s)	853, 1075
LweI	GCATC	4 cut(s)	64, 76, 247, 727
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	4 cut(s)	209, 371, 514, 601
MalI	GATC	5 cut(s)	63, 105, 243, 1059, 1116
MboI	GATC	5 cut(s)	61, 103, 241, 1057, 1114
MboII	GAAGA	1 cut(s)	691
MflI	RGATCY	2 cut(s)	103, 1057
MhlI	GDGCHC	3 cut(s)	302, 451, 793
MlsI	TGGCCA	1 cut(s)	327
MluCI	AATT	4 cut(s)	201, 351, 615, 1051
MluNI	TGGCCA	1 cut(s)	327
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	9 cut(s)	31, 333, 340, 341, 426, 638, 738, 1059, 1173
Mox20I	TGGCCA	1 cut(s)	327
MroI	TCCGGA	1 cut(s)	985
MscI	TGGCCA	1 cut(s)	327
MseI	TTAA	3 cut(s)	282, 645, 696
MslI	CAYNNNNRTG	3 cut(s)	152, 735, 798
Msp20I	TGGCCA	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	1088
MspI	CCGG	2 cut(s)	975, 986
MspR9I	CCNGG	2 cut(s)	368, 1035
MvaI	CCWGG	2 cut(s)	368, 1035
NcoI	CCATGG	4 cut(s)	322, 485, 538, 793
NdeI	CATATG	1 cut(s)	922
NdeII	GATC	5 cut(s)	61, 103, 241, 1057, 1114
NlaIV	GGNNCC	8 cut(s)	448, 478, 552, 790, 805, 822, 847, 973
NmuCI	GTSAC	3 cut(s)	209, 371, 514
NspI	RCATGY	2 cut(s)	379, 641
PaqCI	CACCTGC	2 cut(s)	224, 891
PceI	AGGCCT	2 cut(s)	343, 1033
PciI	ACATGT	2 cut(s)	375, 637
PfeI	GAWTC	2 cut(s)	982, 997
Pfl23II	CGTACG	1 cut(s)	221
PkrI	GCNGC	3 cut(s)	755, 868, 1090
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Ppu21I	YACGTR	1 cut(s)	209
PpuMI	RGGWCCY	2 cut(s)	477, 820
PscI	ACATGT	2 cut(s)	375, 637
PshAI	GACNNNNGTC	1 cut(s)	369
Psp5II	RGGWCCY	2 cut(s)	477, 820
Psp6I	CCWGG	2 cut(s)	366, 1033
PspGI	CCWGG	2 cut(s)	366, 1033
PspLI	CGTACG	1 cut(s)	221
PspN4I	GGNNCC	8 cut(s)	448, 478, 552, 790, 805, 822, 847, 973
PspPI	GGNCC	3 cut(s)	477, 725, 820
PspPPI	RGGWCCY	2 cut(s)	477, 820
PsuI	RGATCY	2 cut(s)	103, 1057
PvuII	CAGCTG	1 cut(s)	1088
RsaI	GTAC	3 cut(s)	207, 223, 668
RsaNI	GTAC	3 cut(s)	206, 222, 667
RseI	CAYNNNNRTG	3 cut(s)	152, 735, 798
SaqAI	TTAA	3 cut(s)	282, 645, 696
SatI	GCNGC	3 cut(s)	754, 867, 1089
Sau3AI	GATC	5 cut(s)	61, 103, 241, 1057, 1114
Sau96I	GGNCC	3 cut(s)	477, 725, 820
ScaI	AGTACT	1 cut(s)	668
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	2 cut(s)	368, 1035
SduI	GDGCHC	3 cut(s)	302, 451, 793
SfaNI	GCATC	4 cut(s)	64, 76, 247, 727
SinI	GGWCC	2 cut(s)	477, 820
SmiMI	CAYNNNNRTG	3 cut(s)	152, 735, 798
SmlI	CTYRAG	3 cut(s)	95, 1061, 1164
SmoI	CTYRAG	3 cut(s)	95, 1061, 1164
Sse9I	AATT	4 cut(s)	201, 351, 615, 1051
SseBI	AGGCCT	2 cut(s)	343, 1033
SsiI	CCGC	1 cut(s)	754
StuI	AGGCCT	2 cut(s)	343, 1033
StyD4I	CCNGG	2 cut(s)	366, 1033
StyI	CCWWGG	5 cut(s)	322, 485, 538, 793, 828
TaaI	ACNGT	5 cut(s)	520, 571, 601, 734, 965
TaiI	ACGT	1 cut(s)	211
TasI	AATT	4 cut(s)	201, 351, 615, 1051
TatI	WGTACW	1 cut(s)	666
TauI	GCSGC	1 cut(s)	756
TfiI	GAWTC	2 cut(s)	982, 997
Tru1I	TTAA	3 cut(s)	282, 645, 696
Tru9I	TTAA	3 cut(s)	282, 645, 696
TscAI	CASTG	8 cut(s)	84, 397, 409, 523, 574, 754, 892, 957
TseFI	GTSAC	3 cut(s)	209, 371, 514
TseI	GCWGC	2 cut(s)	866, 1088
Tsp45I	GTSAC	3 cut(s)	209, 371, 514
TspDTI	ATGAA	2 cut(s)	609, 1116
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	8 cut(s)	84, 397, 409, 523, 574, 754, 892, 957
VpaK11BI	GGWCC	2 cut(s)	477, 820
XapI	RAATTY	1 cut(s)	1051
XceI	RCATGY	2 cut(s)	379, 641
XcmI	CCANNNNNNNNNTGG	3 cut(s)	145, 151, 184
XmiI	GTMKAC	1 cut(s)	834
ZrmI	AGTACT	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.