Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002331

Physical Location & Seq

Genomic Coordinates Reverse (-)

1141558 .. 1143130

Gene Structure 1573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G04270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCGGATGTTGAACCAGAGGTTGCTGCTGCTGGAGTTCCCAAGAAGAGGACGTTTAAGAAGTTTGCCTTCAAAGGAGTTGATCTCGATGCTCTTCTCGATATGTCTACTGATGATCTTGTCAAGCTCTTCTCTTCTCGTATTCGTAGAAGGTTCTCTAGAGGTTTGACAAGGAAGCCAATGGCTCTGATTAAGAAGCTGAGGAAAGCGAAAAGGGAGGCACCACAAGGTGAGAAGCCAGAACCAGTGAGAACCCACTTGAGGAACATGATCATCGTCCCTGAAATGATTGGAAGCATCATTGGAGTGTACAACGGAAAGACTTTCAACCAGGTTGAGATCAAGCCTGAGATGATTGGTCACTACCTGGCTGAGTTCTCTATCTCATACAAGCCGGTCAAGCACGGTAGGCCTGGTGTTGGTGCTACCCACTCTTCCAGATTCATTCCCCTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

152

Amino Acids

17.13

Weight (kDa)

10.34

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19	PF00203	50 - 134	1.1e-33	Ribosomal protein S19

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04270 AT1G04270 AT1G33850 AT5G09490 AT5G09500 AT5G09510 AT5G09510 AT5G43640
fragaria_vesca	FvH4_1g16020 FvH4_2g04890 FvH4_4g02630 FvH4_6g02650
malus_domestica	MD00G1187800.v1.1 MD04G1226500.v1.1 MD12G1243500.v1.1 MD13G1207000.v1.1 MD16G1208600.v1.1
prunus_persica	Prupe.1G030600_v2.0.a1 Prupe.6G345200_v2.0.a1
pyrus_communis	pycom04g19970 pycom12g22260 pycom13g17930
rosa_chinensis	RchiOBHm_Chr3g0450581 RchiOBHm_Chr4g0390491
rosa_laevigata	RLG00000009921 RLG00000025719
rosa_multiflora	Rmu_sc0000078.1_g000043 Rmu_sc0005951.1_g000014 Rmu_sc0013467.1_g000008 Rmu_sc0030937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336490 Rroxscaffold_6G00428280
rosa_rugosa	Rorug02G0628800 Rorug03G0330900
rosa_samantha	Rh3AG029600 Rh3BG030000 Rh3CG028900 Rh3DG029700 Rh4AG032200 Rh4CG035700 Rh4DG028600
rosa_wichuraiana	Rw3G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	220
AccI	GTMKAC	1 cut(s)	107
AciI	CCGC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	3 cut(s)	48, 261, 419
AflII	CTTAAG	1 cut(s)	452
AgsI	TTSAA	3 cut(s)	14, 73, 328
AjnI	CCWGG	3 cut(s)	330, 366, 412
AluBI	AGCT	2 cut(s)	127, 199
AluI	AGCT	2 cut(s)	127, 199
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	2 cut(s)	26, 29
AsuHPI	GGTGA	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	220
BbvCI	CCTCAGC	1 cut(s)	200
BbvI	GCAGC	2 cut(s)	13, 16
BciT130I	CCWGG	3 cut(s)	332, 368, 414
BclI	TGATCA	1 cut(s)	270
BfaI	CTAG	1 cut(s)	159
BfrI	CTTAAG	1 cut(s)	452
BisI	GCNGC	2 cut(s)	27, 30
BlsI	GCNGC	2 cut(s)	28, 31
Bme1390I	CCNGG	3 cut(s)	332, 368, 414
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	3 cut(s)	332, 368, 414
BmsI	GCATC	2 cut(s)	79, 306
BplI	GAGNNNNNCTC	2 cut(s)	69, 101
BpmI	CTGGAG	1 cut(s)	54
Bpu10I	CCTNAGC	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 261, 419
Bse118I	RCCGGY	1 cut(s)	394
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	3 cut(s)	332, 368, 414
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	3 cut(s)	48, 261, 419
BseMII	CTCAG	3 cut(s)	191, 339, 363
BseNI	ACTGG	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	13, 16
BshFI	GGCC	1 cut(s)	412
BshNI	GGYRCC	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	3 cut(s)	48, 261, 419
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	412
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	4 cut(s)	82, 115, 270, 339
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	3 cut(s)	192, 340, 364
BspLI	GGNNCC	1 cut(s)	222
BspQI	GCTCTTC	2 cut(s)	99, 134
BspT107I	GGYRCC	1 cut(s)	220
BspTI	CTTAAG	1 cut(s)	452
BsrFI	RCCGGY	1 cut(s)	394
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	245
BssAI	RCCGGY	1 cut(s)	394
BssMI	GATC	4 cut(s)	82, 115, 270, 339
Bst2UI	CCWGG	3 cut(s)	332, 368, 414
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	5 cut(s)	41, 99, 134, 139, 439
BstAFI	CTTAAG	1 cut(s)	452
BstAUI	TGTACA	1 cut(s)	309
BstDEI	CTNAG	3 cut(s)	200, 348, 372
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	4 cut(s)	85, 118, 273, 342
BstMBI	GATC	4 cut(s)	82, 115, 270, 339
BstMWI	GCNNNNNNNGC	2 cut(s)	400, 409
BstNI	CCWGG	3 cut(s)	332, 368, 414
BstSCI	CCNGG	3 cut(s)	330, 366, 412
BstV1I	GCAGC	2 cut(s)	13, 16
BsuRI	GGCC	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	252
Cfr10I	RCCGGY	1 cut(s)	394
CsiI	ACCWGGT	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	9 cut(s)	127, 178, 185, 199, 238, 346, 371, 394, 412
CviKI_1	RGCY	9 cut(s)	127, 178, 185, 199, 238, 346, 371, 394, 412
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	3 cut(s)	200, 348, 372
DpnI	GATC	4 cut(s)	84, 117, 272, 341
DpnII	GATC	4 cut(s)	82, 115, 270, 339
DraIII	CACNNNGTG	1 cut(s)	230
Eam1104I	CTCTTC	5 cut(s)	41, 99, 134, 139, 439
EarI	CTCTTC	5 cut(s)	41, 99, 134, 139, 439
EciI	GGCGGA	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	412
EcoRII	CCWGG	3 cut(s)	330, 366, 412
FaeI	CATG	1 cut(s)	271
FaiI	YATR	3 cut(s)	104, 269, 388
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	1 cut(s)	267
FbaI	TGATCA	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	27, 30
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	2 cut(s)	27, 30
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	2 cut(s)	27, 30
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	1 cut(s)	395
Hin1II	CATG	1 cut(s)	271
HinfI	GANTC	1 cut(s)	441
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	108, 310
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	4 cut(s)	86, 98, 159, 438
Hpy8I	GTNNAC	2 cut(s)	108, 310
HpyAV	CCTTC	2 cut(s)	79, 144
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	2 cut(s)	400, 409
HpyF3I	CTNAG	3 cut(s)	200, 348, 372
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	82, 115, 270, 339
LguI	GCTCTTC	2 cut(s)	99, 134
Lsp1109I	GCAGC	2 cut(s)	13, 16
LweI	GCATC	2 cut(s)	79, 306
MabI	ACCWGGT	1 cut(s)	330
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	4 cut(s)	84, 117, 272, 341
MboI	GATC	4 cut(s)	82, 115, 270, 339
MboII	GAAGA	5 cut(s)	58, 86, 121, 126, 426
MnlI	CCTC	6 cut(s)	13, 42, 155, 195, 211, 255
MseI	TTAA	3 cut(s)	57, 192, 453
MslI	CAYNNNNRTG	1 cut(s)	305
MspCI	CTTAAG	1 cut(s)	452
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	3 cut(s)	332, 368, 414
MvaI	CCWGG	3 cut(s)	332, 368, 414
MwoI	GCNNNNNNNGC	2 cut(s)	400, 409
NdeII	GATC	4 cut(s)	82, 115, 270, 339
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	359
PceI	AGGCCT	1 cut(s)	412
PciSI	GCTCTTC	2 cut(s)	99, 134
PfeI	GAWTC	1 cut(s)	441
PkrI	GCNGC	2 cut(s)	28, 31
Psp6I	CCWGG	3 cut(s)	330, 366, 412
PspGI	CCWGG	3 cut(s)	330, 366, 412
PspN4I	GGNNCC	1 cut(s)	222
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	305
SapI	GCTCTTC	2 cut(s)	99, 134
SaqAI	TTAA	3 cut(s)	57, 192, 453
SatI	GCNGC	2 cut(s)	27, 30
Sau3AI	GATC	4 cut(s)	82, 115, 270, 339
ScrFI	CCNGG	3 cut(s)	332, 368, 414
SetI	ASST	9 cut(s)	24, 56, 129, 155, 166, 201, 232, 336, 369
SexAI	ACCWGGT	1 cut(s)	330
SfaNI	GCATC	2 cut(s)	79, 306
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	2 cut(s)	259, 452
SmoI	CTYRAG	2 cut(s)	259, 452
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	159
StuI	AGGCCT	1 cut(s)	412
StyD4I	CCNGG	3 cut(s)	330, 366, 412
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	2 cut(s)	87, 99
TatI	WGTACW	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	3 cut(s)	57, 192, 453
Tru9I	TTAA	3 cut(s)	57, 192, 453
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	2 cut(s)	26, 29
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	433
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	1 cut(s)	252
Vha464I	CTTAAG	1 cut(s)	452
XbaI	TCTAGA	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	107
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.