Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002331

Physical Location & Seq

Genomic Coordinates Reverse (-)

4314530 .. 4316443

Gene Structure 1914 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00336490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCGGACGTTGAGACCGATGTGGCGGCAGCCGGAGTCCCGAAGAAGAGAACGTTCAAGAAGTTCAGCTTCAGAGGCGTCGATCTCGATGCTCTCCTCGACATGTCCACTGACGAACTCGTCAAGCTCTTCCCTGCTCGAGCTCGCAGAAGAGGGGTTCTGAAGCGCAAGCCCATGGCTTTGATCAAGAAGCTTCGCAAAGCCAAAAGGGAGGCTCCACCTGGTGAGAAGCCAGAGCCCGTTCGTACCCATCTGCGTAACATGATTATAGTACCGGAAATGATAGGAAGCGTTATTGGTGTGTACAATGGAAAGACCTTCAATCAGGTTGAAATCAAGCCGGAGATGATCAGTCACTACCTTGCTGAGTTCTCAATTTCATACAAGCCCGTCAAGCACGGTAGACCTGGTATTGGTGCCACCCACTCTTCAAGGTTCATTCCTCTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

150

Amino Acids

16.86

Weight (kDa)

10.34

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19	PF00203	51 - 133	3.3e-32	Ribosomal protein S19

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04270 AT1G04270 AT1G33850 AT5G09490 AT5G09500 AT5G09510 AT5G09510 AT5G43640
fragaria_vesca	FvH4_1g16020 FvH4_2g04890 FvH4_4g02630 FvH4_6g02650
malus_domestica	MD00G1187800.v1.1 MD04G1226500.v1.1 MD12G1243500.v1.1 MD13G1207000.v1.1 MD16G1208600.v1.1
prunus_persica	Prupe.1G030600_v2.0.a1 Prupe.6G345200_v2.0.a1
pyrus_communis	pycom04g19970 pycom12g22260 pycom13g17930
rosa_chinensis	RchiOBHm_Chr3g0450581 RchiOBHm_Chr4g0390491
rosa_laevigata	RLG00000009921 RLG00000025719
rosa_multiflora	Rmu_sc0000078.1_g000043 Rmu_sc0005951.1_g000014 Rmu_sc0013467.1_g000008 Rmu_sc0030937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336490 Rroxscaffold_6G00428280
rosa_rugosa	Rorug02G0628800 Rorug03G0330900
rosa_samantha	Rh3AG029600 Rh3BG030000 Rh3CG028900 Rh3DG029700 Rh4AG032200 Rh4CG035700 Rh4DG028600
rosa_wichuraiana	Rw3G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	416
AccI	GTMKAC	1 cut(s)	403
AciI	CCGC	2 cut(s)	5, 26
AclI	AACGTT	1 cut(s)	53
AcuI	CTGAAG	2 cut(s)	55, 182
AcyI	GRCGYC	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	224
AfaI	GTAC	3 cut(s)	247, 273, 305
AfiI	CCNNNNNNNGG	1 cut(s)	413
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	4 cut(s)	58, 322, 332, 432
AjnI	CCWGG	2 cut(s)	220, 406
AluBI	AGCT	4 cut(s)	69, 127, 143, 193
AluI	AGCT	4 cut(s)	69, 127, 143, 193
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	8
Ama87I	CYCGRG	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	138
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	2 cut(s)	145, 240
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	258
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	2 cut(s)	222, 408
BclI	TGATCA	2 cut(s)	183, 348
BcoDI	GTCTC	1 cut(s)	8
BisI	GCNGC	2 cut(s)	27, 30
BlsI	GCNGC	2 cut(s)	28, 31
Bme1390I	CCNGG	2 cut(s)	222, 408
BmeT110I	CYCGRG	1 cut(s)	138
BmiI	GGNNCC	2 cut(s)	216, 418
BmrFI	CCNGG	2 cut(s)	222, 408
BmsI	GCATC	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
BseBI	CCWGG	2 cut(s)	222, 408
BseDI	CCNNGG	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMII	CTCAG	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	3 cut(s)	33, 275, 341
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	2 cut(s)	145, 240
Bsp1407I	TGTACA	1 cut(s)	303
Bsp143I	GATC	3 cut(s)	82, 183, 348
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	2 cut(s)	5, 26
BspCNI	CTCAG	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	216, 418
BspQI	GCTCTTC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	3 cut(s)	82, 183, 348
BssNI	GRCGYC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	222, 408
Bst4CI	ACNGT	1 cut(s)	401
Bst6I	CTCTTC	4 cut(s)	41, 134, 145, 433
BstACI	GRCGYC	1 cut(s)	78
BstAUI	TGTACA	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	145, 170
BstDEI	CTNAG	1 cut(s)	366
BstDSI	CCRYGG	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	3 cut(s)	85, 186, 351
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	3 cut(s)	82, 183, 348
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 394
BstNI	CCWGG	2 cut(s)	222, 408
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	220, 406
BstV1I	GCAGC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	145, 170
CfoI	GCGC	1 cut(s)	168
CseI	GACGC	1 cut(s)	67
CsiI	ACCWGGT	2 cut(s)	220, 406
Csp6I	GTAC	3 cut(s)	246, 272, 304
CviAII	CATG	3 cut(s)	103, 175, 262
CviQI	GTAC	3 cut(s)	246, 272, 304
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	3 cut(s)	84, 185, 350
DpnII	GATC	3 cut(s)	82, 183, 348
DraIII	CACNNNGTG	1 cut(s)	224
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
Eam1104I	CTCTTC	4 cut(s)	41, 134, 145, 433
EarI	CTCTTC	4 cut(s)	41, 134, 145, 433
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	2 cut(s)	145, 240
Eco31I	GGTCTC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	143
Eco57I	CTGAAG	2 cut(s)	55, 182
Eco88I	CYCGRG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	220, 406
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	2 cut(s)	145, 240
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	3 cut(s)	106, 178, 265
FaiI	YATR	5 cut(s)	104, 176, 263, 269, 382
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	3 cut(s)	102, 174, 261
FbaI	TGATCA	2 cut(s)	183, 348
FblI	GTMKAC	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	27, 30
FriOI	GRGCYC	2 cut(s)	145, 240
Fsp4HI	GCNGC	2 cut(s)	27, 30
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	2 cut(s)	27, 30
HapII	CCGG	3 cut(s)	33, 275, 341
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	168
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	3 cut(s)	106, 178, 265
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	1 cut(s)	36
HpaII	CCGG	3 cut(s)	33, 275, 341
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	3 cut(s)	108, 304, 404
Hpy188I	TCNGA	3 cut(s)	74, 162, 447
Hpy188III	TCNNGA	4 cut(s)	40, 58, 86, 187
Hpy8I	GTNNAC	3 cut(s)	108, 304, 404
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	2 cut(s)	9, 53
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 394
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	2 cut(s)	9, 53
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	3 cut(s)	106, 178, 265
HspAI	GCGC	1 cut(s)	166
Ksp22I	TGATCA	2 cut(s)	183, 348
Kzo9I	GATC	3 cut(s)	82, 183, 348
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	220
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	1 cut(s)	79
MabI	ACCWGGT	2 cut(s)	220, 406
MaeII	ACGT	2 cut(s)	9, 53
MaeIII	GTNAC	2 cut(s)	257, 353
MalI	GATC	3 cut(s)	84, 185, 350
MboI	GATC	3 cut(s)	82, 183, 348
MboII	GAAGA	5 cut(s)	55, 58, 121, 162, 420
MhlI	GDGCHC	2 cut(s)	145, 240
MluCI	AATT	1 cut(s)	375
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	5 cut(s)	68, 107, 146, 205, 453
MspI	CCGG	3 cut(s)	33, 275, 341
MspR9I	CCNGG	2 cut(s)	222, 408
MvaI	CCWGG	2 cut(s)	222, 408
MwoI	GCNNNNNNNGC	2 cut(s)	75, 394
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	3 cut(s)	82, 183, 348
NlaIII	CATG	3 cut(s)	106, 178, 265
NlaIV	GGNNCC	2 cut(s)	216, 418
NmuCI	GTSAC	1 cut(s)	353
NspI	RCATGY	1 cut(s)	106
PaeR7I	CTCGAG	1 cut(s)	138
PciI	ACATGT	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	28, 31
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PscI	ACATGT	1 cut(s)	102
Psp124BI	GAGCTC	1 cut(s)	145
Psp1406I	AACGTT	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	220, 406
PspGI	CCWGG	2 cut(s)	220, 406
PspN4I	GGNNCC	2 cut(s)	216, 418
PspXI	VCTCGAGB	1 cut(s)	138
RsaI	GTAC	3 cut(s)	247, 273, 305
RsaNI	GTAC	3 cut(s)	246, 272, 304
SacI	GAGCTC	1 cut(s)	145
SapI	GCTCTTC	1 cut(s)	134
SatI	GCNGC	2 cut(s)	27, 30
Sau3AI	GATC	3 cut(s)	82, 183, 348
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	2 cut(s)	222, 408
SduI	GDGCHC	2 cut(s)	145, 240
SexAI	ACCWGGT	2 cut(s)	220, 406
SfaNI	GCATC	1 cut(s)	79
Sfr274I	CTCGAG	1 cut(s)	138
SlaI	CTCGAG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	1 cut(s)	375
SsiI	CCGC	2 cut(s)	5, 26
SstI	GAGCTC	1 cut(s)	145
StyD4I	CCNGG	2 cut(s)	220, 406
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	2 cut(s)	12, 56
TaqI	TCGA	4 cut(s)	81, 87, 99, 139
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	1 cut(s)	375
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	1 cut(s)	29
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	2 cut(s)	369, 427
TspRI	CASTG	1 cut(s)	115
XceI	RCATGY	1 cut(s)	106
XhoI	CTCGAG	1 cut(s)	138
XmiI	GTMKAC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.