Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005951.1

Orthogroup ID

OG0002331

Physical Location & Seq

Genomic Coordinates Forward (+)

97441 .. 97938

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005951.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

atggcggaagtggaagctgacgtggcggcggccggagtgccgaagaagaggacgttcaagaagttcagcttcagaggagtggatttggatgctcttctggacatgtcgactgacgagctcgttaagctcttccctgccagggctcggagaaggtttcagaggggattgaagagaaagccaatggcattgatcaagaagctgcgcagagctgtaagattctttatcttgtgtgtgcatttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

80

Amino Acids

9.25

Weight (kDa)

11.21

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04270 AT1G04270 AT1G33850 AT5G09490 AT5G09500 AT5G09510 AT5G09510 AT5G43640
fragaria_vesca	FvH4_1g16020 FvH4_2g04890 FvH4_4g02630 FvH4_6g02650
malus_domestica	MD00G1187800.v1.1 MD04G1226500.v1.1 MD12G1243500.v1.1 MD13G1207000.v1.1 MD16G1208600.v1.1
prunus_persica	Prupe.1G030600_v2.0.a1 Prupe.6G345200_v2.0.a1
pyrus_communis	pycom04g19970 pycom12g22260 pycom13g17930
rosa_chinensis	RchiOBHm_Chr3g0450581 RchiOBHm_Chr4g0390491
rosa_laevigata	RLG00000009921 RLG00000025719
rosa_multiflora	Rmu_sc0000078.1_g000043 Rmu_sc0005951.1_g000014 Rmu_sc0013467.1_g000008 Rmu_sc0030937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336490 Rroxscaffold_6G00428280
rosa_rugosa	Rorug02G0628800 Rorug03G0330900
rosa_samantha	Rh3AG029600 Rh3BG030000 Rh3CG028900 Rh3DG029700 Rh4AG032200 Rh4CG035700 Rh4DG028600
rosa_wichuraiana	Rw3G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	107
AciI	CCGC	3 cut(s)	5, 26, 29
AcoI	YGGCCR	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	55
AfiI	CCNNNNNNNGG	2 cut(s)	139, 144
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	2 cut(s)	58, 169
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	6 cut(s)	17, 69, 118, 127, 199, 209
AluI	AGCT	6 cut(s)	17, 69, 118, 127, 199, 209
Alw21I	GWGCWC	1 cut(s)	120
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	199
AspLEI	GCGC	1 cut(s)	204
BanII	GRGCYC	2 cut(s)	120, 145
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	186
BciT130I	CCWGG	1 cut(s)	139
BclI	TGATCA	1 cut(s)	189
BisI	GCNGC	3 cut(s)	27, 30, 200
BlsI	GCNGC	3 cut(s)	28, 31, 201
Bme1390I	CCNGG	1 cut(s)	139
BmgBI	CACGTC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 144
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	2 cut(s)	139, 144
BseRI	GAGGAG	1 cut(s)	90
BseX3I	CGGCCG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	186
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	139, 144
BsnI	GGCC	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	120, 145
Bsp143I	GATC	1 cut(s)	189
BspACI	CCGC	3 cut(s)	5, 26, 29
BspANI	GGCC	1 cut(s)	32
BspQI	GCTCTTC	2 cut(s)	99, 134
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	139
Bst6I	CTCTTC	4 cut(s)	41, 99, 134, 164
BstF5I	GGATG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	189
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 124
BstNI	CCWGG	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	186
BstZI	CGGCCG	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	32
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	94
CfoI	GCGC	1 cut(s)	204
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	9 cut(s)	17, 32, 69, 118, 127, 143, 178, 199, 209
CviKI_1	RGCY	9 cut(s)	17, 32, 69, 118, 127, 143, 178, 199, 209
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
EaeI	YGGCCR	1 cut(s)	30
EagI	CGGCCG	1 cut(s)	30
Eam1104I	CTCTTC	4 cut(s)	41, 99, 134, 164
EarI	CTCTTC	4 cut(s)	41, 99, 134, 164
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	118
EclXI	CGGCCG	1 cut(s)	30
Eco24I	GRGCYC	2 cut(s)	120, 145
Eco52I	CGGCCG	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	137
EcoT38I	GRGCYC	2 cut(s)	120, 145
FaeI	CATG	1 cut(s)	106
FaiI	YATR	1 cut(s)	104
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	3 cut(s)	27, 30, 200
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	2 cut(s)	120, 145
Fsp4HI	GCNGC	3 cut(s)	27, 30, 200
FspI	TGCGCA	1 cut(s)	203
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	3 cut(s)	27, 30, 200
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	1 cut(s)	33
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	1 cut(s)	216
HpaII	CCGG	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	3 cut(s)	74, 147, 159
Hpy188III	TCNNGA	3 cut(s)	58, 98, 193
Hpy8I	GTNNAC	1 cut(s)	108
HpyAV	CCTTC	1 cut(s)	144
HpyCH4IV	ACGT	2 cut(s)	21, 53
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 124
HpySE526I	ACGT	2 cut(s)	21, 53
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	189
LguI	GCTCTTC	2 cut(s)	99, 134
LpnPI	CCDG	5 cut(s)	46, 83, 124, 147, 151
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	1 cut(s)	79
MaeII	ACGT	2 cut(s)	21, 53
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	5 cut(s)	55, 58, 86, 121, 181
MhlI	GDGCHC	2 cut(s)	120, 145
MnlI	CCTC	3 cut(s)	42, 68, 153
MseI	TTAA	1 cut(s)	123
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	2 cut(s)	23, 124
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	1 cut(s)	106
NsbI	TGCGCA	1 cut(s)	203
NspI	RCATGY	1 cut(s)	106
PciI	ACATGT	1 cut(s)	102
PciSI	GCTCTTC	2 cut(s)	99, 134
PfeI	GAWTC	1 cut(s)	216
PkrI	GCNGC	3 cut(s)	28, 31, 201
PscI	ACATGT	1 cut(s)	102
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	120
SalI	GTCGAC	1 cut(s)	106
SapI	GCTCTTC	2 cut(s)	99, 134
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	3 cut(s)	27, 30, 200
Sau3AI	GATC	1 cut(s)	189
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	2 cut(s)	120, 145
SetI	ASST	9 cut(s)	19, 24, 56, 71, 120, 129, 155, 201, 211
SfaNI	GCATC	1 cut(s)	79
SsiI	CCGC	3 cut(s)	5, 26, 29
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	137
TaiI	ACGT	2 cut(s)	24, 56
TaqI	TCGA	1 cut(s)	107
TauI	GCSGC	2 cut(s)	29, 32
TfiI	GAWTC	1 cut(s)	216
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseI	GCWGC	1 cut(s)	199
XceI	RCATGY	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.