ribosomal small subunit assembly
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G04270 AT1G04270 AT1G33850 AT5G09490 AT5G09500 AT5G09510 AT5G09510 AT5G43640 |
| fragaria_vesca | FvH4_1g16020 FvH4_2g04890 FvH4_4g02630 FvH4_6g02650 |
| malus_domestica | MD00G1187800.v1.1 MD04G1226500.v1.1 MD12G1243500.v1.1 MD13G1207000.v1.1 MD16G1208600.v1.1 |
| prunus_persica | Prupe.1G030600_v2.0.a1 Prupe.6G345200_v2.0.a1 |
| pyrus_communis | pycom04g19970 pycom12g22260 pycom13g17930 |
| rosa_chinensis | RchiOBHm_Chr3g0450581 RchiOBHm_Chr4g0390491 |
| rosa_laevigata | RLG00000009921 RLG00000025719 |
| rosa_multiflora | Rmu_sc0000078.1_g000043 Rmu_sc0005951.1_g000014 Rmu_sc0013467.1_g000008 Rmu_sc0030937.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00336490 Rroxscaffold_6G00428280 |
| rosa_rugosa | Rorug02G0628800 Rorug03G0330900 |
| rosa_samantha | Rh3AG029600 Rh3BG030000 Rh3CG028900 Rh3DG029700 Rh4AG032200 Rh4CG035700 Rh4DG028600 |
| rosa_wichuraiana | Rw3G002280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 194 |
| AciI | CCGC | 2 cut(s) | 20, 200 |
| AflIII | ACRYGT | 1 cut(s) | 93 |
| AgsI | TTSAA | 1 cut(s) | 49 |
| AjnI | CCWGG | 1 cut(s) | 161 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 96, 128 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 145 |
| AspLEI | GCGC | 2 cut(s) | 85, 195 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 62, 96 |
| BciT130I | CCWGG | 1 cut(s) | 163 |
| BclI | TGATCA | 1 cut(s) | 180 |
| BfaI | CTAG | 1 cut(s) | 150 |
| BglII | AGATCT | 1 cut(s) | 106 |
| BisI | GCNGC | 1 cut(s) | 21 |
| BlsI | GCNGC | 1 cut(s) | 22 |
| Bme1390I | CCNGG | 1 cut(s) | 163 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmrFI | CCNGG | 1 cut(s) | 163 |
| BmsI | GCATC | 1 cut(s) | 70 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 60, 92 |
| BseBI | CCWGG | 1 cut(s) | 163 |
| BseRI | GAGGAG | 1 cut(s) | 81 |
| Bsp143I | GATC | 3 cut(s) | 73, 106, 180 |
| BspACI | CCGC | 2 cut(s) | 20, 200 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BssMI | GATC | 3 cut(s) | 73, 106, 180 |
| Bst2UI | CCWGG | 1 cut(s) | 163 |
| BstHHI | GCGC | 2 cut(s) | 85, 195 |
| BstKTI | GATC | 3 cut(s) | 76, 109, 183 |
| BstMBI | GATC | 3 cut(s) | 73, 106, 180 |
| BstNI | CCWGG | 1 cut(s) | 163 |
| BstNSI | RCATGY | 1 cut(s) | 97 |
| BstSCI | CCNGG | 1 cut(s) | 161 |
| BstX2I | RGATCY | 1 cut(s) | 106 |
| BstYI | RGATCY | 1 cut(s) | 106 |
| CfoI | GCGC | 2 cut(s) | 85, 195 |
| CviAII | CATG | 1 cut(s) | 94 |
| CviJI | RGCY | 2 cut(s) | 23, 176 |
| CviKI_1 | RGCY | 2 cut(s) | 23, 176 |
| DpnI | GATC | 3 cut(s) | 75, 108, 182 |
| DpnII | GATC | 3 cut(s) | 73, 106, 180 |
| EcoRII | CCWGG | 1 cut(s) | 161 |
| FaeI | CATG | 1 cut(s) | 97 |
| FaiI | YATR | 3 cut(s) | 95, 173, 211 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 29, 61 |
| FatI | CATG | 1 cut(s) | 93 |
| FbaI | TGATCA | 1 cut(s) | 180 |
| Fnu4HI | GCNGC | 1 cut(s) | 21 |
| Fsp4HI | GCNGC | 1 cut(s) | 21 |
| FspBI | CTAG | 1 cut(s) | 150 |
| FspI | TGCGCA | 1 cut(s) | 194 |
| GlaI | GCGC | 2 cut(s) | 84, 194 |
| GluI | GCNGC | 1 cut(s) | 21 |
| HhaI | GCGC | 2 cut(s) | 85, 195 |
| Hin1II | CATG | 1 cut(s) | 97 |
| Hin6I | GCGC | 2 cut(s) | 83, 193 |
| HinP1I | GCGC | 2 cut(s) | 83, 193 |
| HinfI | GANTC | 2 cut(s) | 42, 69 |
| Hpy166II | GTNNAC | 1 cut(s) | 99 |
| Hpy188I | TCNGA | 1 cut(s) | 65 |
| Hpy188III | TCNNGA | 5 cut(s) | 49, 77, 89, 150, 184 |
| Hpy8I | GTNNAC | 1 cut(s) | 99 |
| HpyAV | CCTTC | 1 cut(s) | 135 |
| Hsp92II | CATG | 1 cut(s) | 97 |
| HspAI | GCGC | 2 cut(s) | 83, 193 |
| Ksp22I | TGATCA | 1 cut(s) | 180 |
| Kzo9I | GATC | 3 cut(s) | 73, 106, 180 |
| LpnPI | CCDG | 4 cut(s) | 9, 21, 148, 175 |
| LweI | GCATC | 1 cut(s) | 70 |
| MaeI | CTAG | 1 cut(s) | 150 |
| MalI | GATC | 3 cut(s) | 75, 108, 182 |
| MboI | GATC | 3 cut(s) | 73, 106, 180 |
| MboII | GAAGA | 2 cut(s) | 37, 116 |
| MflI | RGATCY | 1 cut(s) | 106 |
| MluCI | AATT | 2 cut(s) | 27, 188 |
| MlyI | GAGTC | 1 cut(s) | 78 |
| MnlI | CCTC | 3 cut(s) | 4, 59, 146 |
| MroXI | GAANNNNTTC | 1 cut(s) | 145 |
| MspR9I | CCNGG | 1 cut(s) | 163 |
| MvaI | CCWGG | 1 cut(s) | 163 |
| NdeII | GATC | 3 cut(s) | 73, 106, 180 |
| NlaIII | CATG | 1 cut(s) | 97 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| NsbI | TGCGCA | 1 cut(s) | 194 |
| NspI | RCATGY | 1 cut(s) | 97 |
| PciI | ACATGT | 1 cut(s) | 93 |
| PdmI | GAANNNNTTC | 1 cut(s) | 145 |
| PfeI | GAWTC | 1 cut(s) | 42 |
| PkrI | GCNGC | 1 cut(s) | 22 |
| PleI | GAGTC | 1 cut(s) | 77 |
| PpsI | GAGTC | 1 cut(s) | 77 |
| PscI | ACATGT | 1 cut(s) | 93 |
| Psp6I | CCWGG | 1 cut(s) | 161 |
| PspGI | CCWGG | 1 cut(s) | 161 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PsuI | RGATCY | 1 cut(s) | 106 |
| SatI | GCNGC | 1 cut(s) | 21 |
| Sau3AI | GATC | 3 cut(s) | 73, 106, 180 |
| SchI | GAGTC | 1 cut(s) | 78 |
| ScrFI | CCNGG | 1 cut(s) | 163 |
| SetI | ASST | 3 cut(s) | 15, 146, 172 |
| SfaNI | GCATC | 1 cut(s) | 70 |
| Sse9I | AATT | 2 cut(s) | 27, 188 |
| SsiI | CCGC | 2 cut(s) | 20, 200 |
| SspMI | CTAG | 1 cut(s) | 150 |
| StyD4I | CCNGG | 1 cut(s) | 161 |
| TaqI | TCGA | 3 cut(s) | 72, 78, 90 |
| TasI | AATT | 2 cut(s) | 27, 188 |
| TauI | GCSGC | 1 cut(s) | 23 |
| TfiI | GAWTC | 1 cut(s) | 42 |
| XbaI | TCTAGA | 1 cut(s) | 149 |
| XceI | RCATGY | 1 cut(s) | 97 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 169 |
| XmnI | GAANNNNTTC | 1 cut(s) | 145 |
| XspI | CTAG | 1 cut(s) | 150 |