Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002331

Physical Location & Seq

Genomic Coordinates Forward (+)

1991836 .. 1995619

Gene Structure 3784 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG030000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCGGAAGTGGAAGCTGACGTGGCGGCGGCCGGAGTGCCGAAGAAGAGGACGTTCAAGAAGTTCAGCTTCAGAGGAGTGGATTTGGATGCTCTTCTGGACATGTCGACTGACGAGCTCGTTAAGCTCTTCCCTGCCAGGGCTCGGAGAAGGTTTCAGAGGGGATTGAAGAGAAAGCCAATGGCATTGATCAAGAAGCTGCGCAAAGCTAAAAGGGAGGCTCCACCTGGTGAGAAGCCCGAGCCAGTTAGGACTCACCTTCGCAACATGATCATTGTACCTGAAATGATTGGTAGCGTTATTGGAGTCTACAATGGCAAGACCTTCAATCAGGTTGAGATCAAGCCTGAGATGATCAGCCATTATCTTGCTGAGTTCTCTATCAGTTACAAGCCTGTCAAGCACGGAAGGCCTGGTATTGGTGCTACCCACTCTTCCAGGTTCATTCCCCTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

152

Amino Acids

17.18

Weight (kDa)

10.44

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19	PF00203	50 - 135	3e-33	Ribosomal protein S19

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04270 AT1G04270 AT1G33850 AT5G09490 AT5G09500 AT5G09510 AT5G09510 AT5G43640
fragaria_vesca	FvH4_1g16020 FvH4_2g04890 FvH4_4g02630 FvH4_6g02650
malus_domestica	MD00G1187800.v1.1 MD04G1226500.v1.1 MD12G1243500.v1.1 MD13G1207000.v1.1 MD16G1208600.v1.1
prunus_persica	Prupe.1G030600_v2.0.a1 Prupe.6G345200_v2.0.a1
pyrus_communis	pycom04g19970 pycom12g22260 pycom13g17930
rosa_chinensis	RchiOBHm_Chr3g0450581 RchiOBHm_Chr4g0390491
rosa_laevigata	RLG00000009921 RLG00000025719
rosa_multiflora	Rmu_sc0000078.1_g000043 Rmu_sc0005951.1_g000014 Rmu_sc0013467.1_g000008 Rmu_sc0030937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336490 Rroxscaffold_6G00428280
rosa_rugosa	Rorug02G0628800 Rorug03G0330900
rosa_samantha	Rh3AG029600 Rh3BG030000 Rh3CG028900 Rh3DG029700 Rh4AG032200 Rh4CG035700 Rh4DG028600
rosa_wichuraiana	Rw3G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	203
AccI	GTMKAC	2 cut(s)	107, 309
AciI	CCGC	3 cut(s)	5, 26, 29
AcoI	YGGCCR	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	55
AdeI	CACNNNGTG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	3 cut(s)	139, 144, 419
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	3 cut(s)	58, 169, 328
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	4 cut(s)	137, 226, 412, 437
AluBI	AGCT	6 cut(s)	17, 69, 118, 127, 199, 209
AluI	AGCT	6 cut(s)	17, 69, 118, 127, 199, 209
Alw21I	GWGCWC	1 cut(s)	120
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	2 cut(s)	30, 410
ApeKI	GCWGC	1 cut(s)	199
AspLEI	GCGC	1 cut(s)	204
AsuHPI	GGTGA	2 cut(s)	242, 248
AvaI	CYCGRG	1 cut(s)	239
BanII	GRGCYC	2 cut(s)	120, 145
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	186
BciT130I	CCWGG	4 cut(s)	139, 228, 414, 439
BclI	TGATCA	3 cut(s)	189, 270, 354
BisI	GCNGC	3 cut(s)	27, 30, 200
BlsI	GCNGC	3 cut(s)	28, 31, 201
Bme1390I	CCNGG	4 cut(s)	139, 228, 414, 439
BmeT110I	CYCGRG	1 cut(s)	239
BmgBI	CACGTC	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	4 cut(s)	139, 228, 414, 439
BmsI	GCATC	1 cut(s)	79
BpuEI	CTTGAG	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 144, 419
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	4 cut(s)	139, 228, 414, 439
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	3 cut(s)	139, 144, 419
BseMII	CTCAG	2 cut(s)	339, 363
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	90
BseX3I	CGGCCG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	186
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	32, 412
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	3 cut(s)	139, 144, 419
BsnI	GGCC	2 cut(s)	32, 412
BsoBI	CYCGRG	1 cut(s)	239
Bsp1286I	GDGCHC	2 cut(s)	120, 145
Bsp143I	GATC	4 cut(s)	189, 270, 339, 354
BspACI	CCGC	3 cut(s)	5, 26, 29
BspANI	GGCC	2 cut(s)	32, 412
BspCNI	CTCAG	2 cut(s)	340, 364
BspLI	GGNNCC	1 cut(s)	222
BspQI	GCTCTTC	2 cut(s)	99, 134
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	4 cut(s)	189, 270, 339, 354
Bst2UI	CCWGG	4 cut(s)	139, 228, 414, 439
Bst6I	CTCTTC	5 cut(s)	41, 99, 134, 164, 439
BstDEI	CTNAG	2 cut(s)	348, 372
BstF5I	GGATG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	4 cut(s)	192, 273, 342, 357
BstMBI	GATC	4 cut(s)	189, 270, 339, 354
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 124, 400, 409
BstNI	CCWGG	4 cut(s)	139, 228, 414, 439
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	4 cut(s)	137, 226, 412, 437
BstV1I	GCAGC	1 cut(s)	186
BstZI	CGGCCG	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	32, 412
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	94
CfoI	GCGC	1 cut(s)	204
CsiI	ACCWGGT	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	2 cut(s)	103, 268
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	2 cut(s)	348, 372
DpnI	GATC	4 cut(s)	191, 272, 341, 356
DpnII	GATC	4 cut(s)	189, 270, 339, 354
DraIII	CACNNNGTG	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	30
EagI	CGGCCG	1 cut(s)	30
Eam1104I	CTCTTC	5 cut(s)	41, 99, 134, 164, 439
EarI	CTCTTC	5 cut(s)	41, 99, 134, 164, 439
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	118
EclXI	CGGCCG	1 cut(s)	30
Eco147I	AGGCCT	1 cut(s)	412
Eco24I	GRGCYC	2 cut(s)	120, 145
Eco52I	CGGCCG	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	118
EcoRII	CCWGG	4 cut(s)	137, 226, 412, 437
EcoT38I	GRGCYC	2 cut(s)	120, 145
FaeI	CATG	2 cut(s)	106, 271
FaiI	YATR	2 cut(s)	104, 269
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	2 cut(s)	102, 267
FbaI	TGATCA	3 cut(s)	189, 270, 354
FblI	GTMKAC	2 cut(s)	107, 309
Fnu4HI	GCNGC	3 cut(s)	27, 30, 200
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	2 cut(s)	120, 145
Fsp4HI	GCNGC	3 cut(s)	27, 30, 200
FspI	TGCGCA	1 cut(s)	203
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	3 cut(s)	27, 30, 200
HaeIII	GGCC	2 cut(s)	32, 412
HapII	CCGG	1 cut(s)	33
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	106, 271
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	2 cut(s)	253, 306
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	2 cut(s)	242, 248
Hpy166II	GTNNAC	2 cut(s)	108, 310
Hpy188I	TCNGA	3 cut(s)	74, 147, 159
Hpy188III	TCNNGA	3 cut(s)	58, 98, 193
Hpy8I	GTNNAC	2 cut(s)	108, 310
HpyAV	CCTTC	4 cut(s)	144, 269, 334, 402
HpyCH4IV	ACGT	2 cut(s)	21, 53
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 124, 400, 409
HpyF3I	CTNAG	2 cut(s)	348, 372
HpySE526I	ACGT	2 cut(s)	21, 53
Hsp92II	CATG	2 cut(s)	106, 271
HspAI	GCGC	1 cut(s)	202
Ksp22I	TGATCA	3 cut(s)	189, 270, 354
Kzo9I	GATC	4 cut(s)	189, 270, 339, 354
LguI	GCTCTTC	2 cut(s)	99, 134
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	1 cut(s)	79
MabI	ACCWGGT	1 cut(s)	226
MaeII	ACGT	2 cut(s)	21, 53
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	4 cut(s)	191, 272, 341, 356
MboI	GATC	4 cut(s)	189, 270, 339, 354
MboII	GAAGA	6 cut(s)	55, 58, 86, 121, 181, 426
MhlI	GDGCHC	2 cut(s)	120, 145
MlyI	GAGTC	2 cut(s)	247, 315
MnlI	CCTC	4 cut(s)	42, 68, 153, 211
MseI	TTAA	1 cut(s)	123
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	4 cut(s)	139, 228, 414, 439
MvaI	CCWGG	4 cut(s)	139, 228, 414, 439
MwoI	GCNNNNNNNGC	4 cut(s)	23, 124, 400, 409
NdeII	GATC	4 cut(s)	189, 270, 339, 354
NlaIII	CATG	2 cut(s)	106, 271
NlaIV	GGNNCC	1 cut(s)	222
NsbI	TGCGCA	1 cut(s)	203
NspI	RCATGY	1 cut(s)	106
PceI	AGGCCT	1 cut(s)	412
PciI	ACATGT	1 cut(s)	102
PciSI	GCTCTTC	2 cut(s)	99, 134
PkrI	GCNGC	3 cut(s)	28, 31, 201
PleI	GAGTC	2 cut(s)	247, 314
PpsI	GAGTC	2 cut(s)	247, 314
PscI	ACATGT	1 cut(s)	102
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	4 cut(s)	137, 226, 412, 437
PspGI	CCWGG	4 cut(s)	137, 226, 412, 437
PspN4I	GGNNCC	1 cut(s)	222
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
SacI	GAGCTC	1 cut(s)	120
SalI	GTCGAC	1 cut(s)	106
SapI	GCTCTTC	2 cut(s)	99, 134
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	3 cut(s)	27, 30, 200
Sau3AI	GATC	4 cut(s)	189, 270, 339, 354
SchI	GAGTC	2 cut(s)	247, 315
ScrFI	CCNGG	4 cut(s)	139, 228, 414, 439
SduI	GDGCHC	2 cut(s)	120, 145
SexAI	ACCWGGT	1 cut(s)	226
SfaNI	GCATC	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	3 cut(s)	5, 26, 29
SstI	GAGCTC	1 cut(s)	120
StuI	AGGCCT	1 cut(s)	412
StyD4I	CCNGG	4 cut(s)	137, 226, 412, 437
TaiI	ACGT	2 cut(s)	24, 56
TaqI	TCGA	1 cut(s)	107
TauI	GCSGC	2 cut(s)	29, 32
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseI	GCWGC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	433
TspGWI	ACGGA	1 cut(s)	420
XceI	RCATGY	1 cut(s)	106
XmiI	GTMKAC	2 cut(s)	107, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.