Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002331

Physical Location & Seq

Genomic Coordinates Reverse (-)

2955008 .. 2956683

Gene Structure 1676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCTGATGTGGAACCAGAGGTTGCAGCAGCAGGAGTTCCAAAGAAGAGAACGTTCAAGAAATTCGCCTTCAAAGGAGTCGATCTCGATGCTCTTCTCGACATGTCTACCGATGATCTTGTCAAGCTCTTCTCTTCCCGTATTCGCAGAAGGTTCTCTAGAGGATTGACGAGAAAGCCTATGGCTTTGATTAAGAAACTCCGCAAGGCGAAAAGAGAGGCACCAGCTGGTGAGAAGCCAGAACCAGTGAGAACCCACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCATCATTGGTGTGTACAATGGAAAGACTTTCAACCAAGTGGAGATCAAGCCTGAGATGATTGGACATTACCTTGCAGAGTTCTCCATCTCGTACAAGCCAGTTAAGCACGGTAGGCCTGGCGTTGGTGCTACCCACTCCTCCAGGTTCATCCCTCTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

152

Amino Acids

17.07

Weight (kDa)

10.34

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19	PF00203	50 - 135	5.3e-34	Ribosomal protein S19

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04270 AT1G04270 AT1G33850 AT5G09490 AT5G09500 AT5G09510 AT5G09510 AT5G43640
fragaria_vesca	FvH4_1g16020 FvH4_2g04890 FvH4_4g02630 FvH4_6g02650
malus_domestica	MD00G1187800.v1.1 MD04G1226500.v1.1 MD12G1243500.v1.1 MD13G1207000.v1.1 MD16G1208600.v1.1
prunus_persica	Prupe.1G030600_v2.0.a1 Prupe.6G345200_v2.0.a1
pyrus_communis	pycom04g19970 pycom12g22260 pycom13g17930
rosa_chinensis	RchiOBHm_Chr3g0450581 RchiOBHm_Chr4g0390491
rosa_laevigata	RLG00000009921 RLG00000025719
rosa_multiflora	Rmu_sc0000078.1_g000043 Rmu_sc0005951.1_g000014 Rmu_sc0013467.1_g000008 Rmu_sc0030937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336490 Rroxscaffold_6G00428280
rosa_rugosa	Rorug02G0628800 Rorug03G0330900
rosa_samantha	Rh3AG029600 Rh3BG030000 Rh3CG028900 Rh3DG029700 Rh4AG032200 Rh4CG035700 Rh4DG028600
rosa_wichuraiana	Rw3G002280

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	220
AccI	GTMKAC	1 cut(s)	107
AciI	CCGC	1 cut(s)	202
AclI	AACGTT	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	62
AfaI	GTAC	2 cut(s)	311, 389
AfiI	CCNNNNNNNGG	2 cut(s)	261, 419
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	3 cut(s)	58, 73, 328
AjnI	CCWGG	2 cut(s)	412, 437
AluBI	AGCT	2 cut(s)	127, 227
AluI	AGCT	2 cut(s)	127, 227
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	2 cut(s)	26, 29
ApoI	RAATTY	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	220
BbvI	GCAGC	2 cut(s)	38, 41
BccI	CCATC	1 cut(s)	389
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	2 cut(s)	414, 439
BclI	TGATCA	1 cut(s)	270
BfaI	CTAG	1 cut(s)	159
BisI	GCNGC	2 cut(s)	27, 30
BlsI	GCNGC	2 cut(s)	28, 31
Bme1390I	CCNGG	2 cut(s)	414, 439
BmiI	GGNNCC	2 cut(s)	15, 222
BmrFI	CCNGG	2 cut(s)	414, 439
BmsI	GCATC	2 cut(s)	79, 306
BplI	GAGNNNNNCTC	2 cut(s)	69, 101
BpmI	CTGGAG	1 cut(s)	421
BpuEI	CTTGAG	2 cut(s)	280, 437
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 419
Bse1I	ACTGG	2 cut(s)	245, 395
BseBI	CCWGG	2 cut(s)	414, 439
BseGI	GGATG	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	261, 419
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	2 cut(s)	245, 395
BseRI	GAGGAG	1 cut(s)	424
BseXI	GCAGC	2 cut(s)	38, 41
BshFI	GGCC	1 cut(s)	412
BshNI	GGYRCC	1 cut(s)	220
BslI	CCNNNNNNNGG	2 cut(s)	261, 419
BsnI	GGCC	1 cut(s)	412
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	4 cut(s)	82, 115, 270, 339
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	1 cut(s)	340
BspLI	GGNNCC	2 cut(s)	15, 222
BspQI	GCTCTTC	2 cut(s)	99, 134
BspT107I	GGYRCC	1 cut(s)	220
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	245, 395
BssMI	GATC	4 cut(s)	82, 115, 270, 339
Bst2UI	CCWGG	2 cut(s)	414, 439
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	4 cut(s)	41, 99, 134, 139
BstAUI	TGTACA	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	444
BstKTI	GATC	4 cut(s)	85, 118, 273, 342
BstMBI	GATC	4 cut(s)	82, 115, 270, 339
BstMWI	GCNNNNNNNGC	2 cut(s)	400, 409
BstNI	CCWGG	2 cut(s)	414, 439
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	412, 437
BstV1I	GCAGC	2 cut(s)	38, 41
BsuRI	GGCC	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	252
Csp6I	GTAC	2 cut(s)	310, 388
CviAII	CATG	2 cut(s)	103, 268
CviJI	RGCY	9 cut(s)	5, 127, 178, 185, 227, 238, 346, 394, 412
CviKI_1	RGCY	9 cut(s)	5, 127, 178, 185, 227, 238, 346, 394, 412
CviQI	GTAC	2 cut(s)	310, 388
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	4 cut(s)	84, 117, 272, 341
DpnII	GATC	4 cut(s)	82, 115, 270, 339
Eam1104I	CTCTTC	4 cut(s)	41, 99, 134, 139
EarI	CTCTTC	4 cut(s)	41, 99, 134, 139
Eco147I	AGGCCT	1 cut(s)	412
EcoRII	CCWGG	2 cut(s)	412, 437
FaeI	CATG	2 cut(s)	106, 271
FaiI	YATR	3 cut(s)	104, 182, 269
FatI	CATG	2 cut(s)	102, 267
FbaI	TGATCA	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	27, 30
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	2 cut(s)	27, 30
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	2 cut(s)	27, 30
GsuI	CTGGAG	1 cut(s)	421
HaeIII	GGCC	1 cut(s)	412
Hin1II	CATG	2 cut(s)	106, 271
HinfI	GANTC	1 cut(s)	78
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	108, 310
Hpy188III	TCNNGA	4 cut(s)	58, 86, 98, 159
Hpy8I	GTNNAC	2 cut(s)	108, 310
HpyAV	CCTTC	2 cut(s)	79, 144
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	2 cut(s)	26, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	400, 409
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	2 cut(s)	106, 271
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	82, 115, 270, 339
LguI	GCTCTTC	2 cut(s)	99, 134
Lsp1109I	GCAGC	2 cut(s)	38, 41
LweI	GCATC	2 cut(s)	79, 306
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	1 cut(s)	53
MalI	GATC	4 cut(s)	84, 117, 272, 341
MboI	GATC	4 cut(s)	82, 115, 270, 339
MboII	GAAGA	4 cut(s)	58, 86, 121, 126
MluCI	AATT	1 cut(s)	62
MlyI	GAGTC	1 cut(s)	87
MnlI	CCTC	6 cut(s)	13, 155, 211, 255, 445, 459
MseI	TTAA	2 cut(s)	192, 399
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	414, 439
MvaI	CCWGG	2 cut(s)	414, 439
MwoI	GCNNNNNNNGC	2 cut(s)	400, 409
NdeII	GATC	4 cut(s)	82, 115, 270, 339
NlaIII	CATG	2 cut(s)	106, 271
NlaIV	GGNNCC	2 cut(s)	15, 222
NspI	RCATGY	1 cut(s)	106
PceI	AGGCCT	1 cut(s)	412
PciI	ACATGT	1 cut(s)	102
PciSI	GCTCTTC	2 cut(s)	99, 134
PkrI	GCNGC	2 cut(s)	28, 31
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PscI	ACATGT	1 cut(s)	102
Psp1406I	AACGTT	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	412, 437
PspGI	CCWGG	2 cut(s)	412, 437
PspN4I	GGNNCC	2 cut(s)	15, 222
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	2 cut(s)	311, 389
RsaNI	GTAC	2 cut(s)	310, 388
RseI	CAYNNNNRTG	1 cut(s)	305
SapI	GCTCTTC	2 cut(s)	99, 134
SaqAI	TTAA	2 cut(s)	192, 399
SatI	GCNGC	2 cut(s)	27, 30
Sau3AI	GATC	4 cut(s)	82, 115, 270, 339
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	2 cut(s)	414, 439
SetI	ASST	7 cut(s)	24, 56, 129, 155, 229, 369, 443
SfaNI	GCATC	2 cut(s)	79, 306
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	2 cut(s)	259, 452
SmoI	CTYRAG	2 cut(s)	259, 452
Sse9I	AATT	1 cut(s)	62
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	1 cut(s)	202
SspMI	CTAG	1 cut(s)	159
StuI	AGGCCT	1 cut(s)	412
StyD4I	CCNGG	2 cut(s)	412, 437
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	3 cut(s)	81, 87, 99
TasI	AATT	1 cut(s)	62
TatI	WGTACW	1 cut(s)	309
Tru1I	TTAA	2 cut(s)	192, 399
Tru9I	TTAA	2 cut(s)	192, 399
TscAI	CASTG	1 cut(s)	252
TseI	GCWGC	2 cut(s)	26, 29
TspDTI	ATGAA	1 cut(s)	433
TspRI	CASTG	1 cut(s)	252
XapI	RAATTY	1 cut(s)	62
XbaI	TCTAGA	1 cut(s)	158
XceI	RCATGY	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	107
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.