Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013467.1

Orthogroup ID

OG0002331

Physical Location & Seq

Genomic Coordinates Forward (+)

29050 .. 29587

Gene Structure 538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013467.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

atggcggacgttgagaccgatgtggcggcagccggagtcccgaagaagagaacgttcaagaagttcagcttcagaggcgtcgatctcgatgctctcctcgacatgtccactgacgaactcgtcaagctcttccctgctcgagctcgcagaaggttccagaggggtctgaagcgcaagcccatggctttgatcaagaagcttcgcaaagcctttgatatgatttatcgaattcatgtgcgcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

81

Amino Acids

9.47

Weight (kDa)

11.02

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04270 AT1G04270 AT1G33850 AT5G09490 AT5G09500 AT5G09510 AT5G09510 AT5G43640
fragaria_vesca	FvH4_1g16020 FvH4_2g04890 FvH4_4g02630 FvH4_6g02650
malus_domestica	MD00G1187800.v1.1 MD04G1226500.v1.1 MD12G1243500.v1.1 MD13G1207000.v1.1 MD16G1208600.v1.1
prunus_persica	Prupe.1G030600_v2.0.a1 Prupe.6G345200_v2.0.a1
pyrus_communis	pycom04g19970 pycom12g22260 pycom13g17930
rosa_chinensis	RchiOBHm_Chr3g0450581 RchiOBHm_Chr4g0390491
rosa_laevigata	RLG00000009921 RLG00000025719
rosa_multiflora	Rmu_sc0000078.1_g000043 Rmu_sc0005951.1_g000014 Rmu_sc0013467.1_g000008 Rmu_sc0030937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336490 Rroxscaffold_6G00428280
rosa_rugosa	Rorug02G0628800 Rorug03G0330900
rosa_samantha	Rh3AG029600 Rh3BG030000 Rh3CG028900 Rh3DG029700 Rh4AG032200 Rh4CG035700 Rh4DG028600
rosa_wichuraiana	Rw3G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
Acc16I	TGCGCA	1 cut(s)	239
AciI	CCGC	2 cut(s)	5, 26
AclI	AACGTT	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	228
AcuI	CTGAAG	2 cut(s)	55, 188
AcyI	GRCGYC	1 cut(s)	78
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	58
AluBI	AGCT	4 cut(s)	69, 127, 143, 199
AluI	AGCT	4 cut(s)	69, 127, 143, 199
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	8
Ama87I	CYCGRG	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	228
AspLEI	GCGC	2 cut(s)	174, 240
AvaI	CYCGRG	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	41
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BclI	TGATCA	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	8
BisI	GCNGC	2 cut(s)	27, 30
BlsI	GCNGC	2 cut(s)	28, 31
BmeT110I	CYCGRG	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	155
BmsI	GCATC	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	82, 189
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	2 cut(s)	5, 26
BspLI	GGNNCC	1 cut(s)	155
BspQI	GCTCTTC	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	2 cut(s)	82, 189
BssNI	GRCGYC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	180
Bst6I	CTCTTC	2 cut(s)	41, 134
BstACI	GRCGYC	1 cut(s)	78
BstC8I	GCNNGC	2 cut(s)	145, 176
BstDSI	CCRYGG	1 cut(s)	180
BstHHI	GCGC	2 cut(s)	174, 240
BstKTI	GATC	2 cut(s)	85, 192
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	2 cut(s)	82, 189
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	145, 176
CfoI	GCGC	2 cut(s)	174, 240
CseI	GACGC	1 cut(s)	67
CviAII	CATG	3 cut(s)	103, 181, 233
CviJI	RGCY	8 cut(s)	32, 69, 127, 143, 178, 185, 199, 209
CviKI_1	RGCY	8 cut(s)	32, 69, 127, 143, 178, 185, 199, 209
DpnI	GATC	2 cut(s)	84, 191
DpnII	GATC	2 cut(s)	82, 189
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
Eam1104I	CTCTTC	2 cut(s)	41, 134
EarI	CTCTTC	2 cut(s)	41, 134
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	145
Eco31I	GGTCTC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	143
Eco57I	CTGAAG	2 cut(s)	55, 188
Eco88I	CYCGRG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	3 cut(s)	106, 184, 236
FaiI	YATR	4 cut(s)	104, 182, 218, 234
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	3 cut(s)	102, 180, 232
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	27, 30
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	2 cut(s)	27, 30
FspI	TGCGCA	1 cut(s)	239
GlaI	GCGC	2 cut(s)	173, 239
GluI	GCNGC	2 cut(s)	27, 30
HapII	CCGG	1 cut(s)	33
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	2 cut(s)	174, 240
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	3 cut(s)	106, 184, 236
Hin6I	GCGC	2 cut(s)	172, 238
HinP1I	GCGC	2 cut(s)	172, 238
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	1 cut(s)	36
HpaII	CCGG	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	2 cut(s)	74, 168
Hpy188III	TCNNGA	5 cut(s)	40, 58, 86, 157, 193
Hpy8I	GTNNAC	1 cut(s)	108
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	144
HpyCH4IV	ACGT	2 cut(s)	9, 53
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpySE526I	ACGT	2 cut(s)	9, 53
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	3 cut(s)	106, 184, 236
HspAI	GCGC	2 cut(s)	172, 238
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	82, 189
LguI	GCTCTTC	1 cut(s)	134
LpnPI	CCDG	3 cut(s)	46, 147, 170
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	1 cut(s)	79
MaeII	ACGT	2 cut(s)	9, 53
MalI	GATC	2 cut(s)	84, 191
MboI	GATC	2 cut(s)	82, 189
MboII	GAAGA	3 cut(s)	55, 58, 121
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	3 cut(s)	68, 107, 153
MspI	CCGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	2 cut(s)	82, 189
NlaIII	CATG	3 cut(s)	106, 184, 236
NlaIV	GGNNCC	1 cut(s)	155
NsbI	TGCGCA	1 cut(s)	239
NspI	RCATGY	1 cut(s)	106
PaeR7I	CTCGAG	1 cut(s)	138
PciI	ACATGT	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	28, 31
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PscI	ACATGT	1 cut(s)	102
Psp124BI	GAGCTC	1 cut(s)	145
Psp1406I	AACGTT	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	155
PspXI	VCTCGAGB	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	145
SapI	GCTCTTC	1 cut(s)	134
SatI	GCNGC	2 cut(s)	27, 30
Sau3AI	GATC	2 cut(s)	82, 189
SchI	GAGTC	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	7 cut(s)	12, 56, 71, 129, 145, 155, 201
SfaNI	GCATC	1 cut(s)	79
Sfr274I	CTCGAG	1 cut(s)	138
SlaI	CTCGAG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	2 cut(s)	5, 26
SstI	GAGCTC	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	180
TaiI	ACGT	2 cut(s)	12, 56
TaqI	TCGA	5 cut(s)	81, 87, 99, 139, 226
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	1 cut(s)	228
TauI	GCSGC	1 cut(s)	29
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	115
XapI	RAATTY	1 cut(s)	228
XceI	RCATGY	1 cut(s)	106
XhoI	CTCGAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.