Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002331

Physical Location & Seq

Genomic Coordinates Reverse (-)

2952216 .. 2953245

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCTGAAGTCGAACCAGATGTTTCCGCAGCTGCTCTTGCGAAGAAGAGAACGTTCAAAAAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTCTTGACATGCCCACTGATGATCTTGTCGAGCTCTTCCCTTCCCGTATAAGAAGAAGGATGAGTAGAGGATTAACGAGGAAGCCTATGGCTCTCATCAAGAAATTGCGCAAAGCGAAACTAGATGCACCAGCTGGTGAGAAGCCCGAAGTAGTGAGAACCCATCTAAGGAACATGGTGATTATGCCTGAAATGATTGGAAGCATCATTGGTGTGTACAATGGAAAGACTTTTAACCAAATCGAGATCAAACCGGAGATGATTGGACATTACCTTGCGGAATTCTCAATCACTTACAAACCCGTTAGGCACGGCAAGCCCGGTCATGGTGCTACACACTCCTCTAGGTTTATCCCTCTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

152

Amino Acids

17.14

Weight (kDa)

10.12

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19	PF00203	50 - 135	1e-33	Ribosomal protein S19

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04270 AT1G04270 AT1G33850 AT5G09490 AT5G09500 AT5G09510 AT5G09510 AT5G43640
fragaria_vesca	FvH4_1g16020 FvH4_2g04890 FvH4_4g02630 FvH4_6g02650
malus_domestica	MD00G1187800.v1.1 MD04G1226500.v1.1 MD12G1243500.v1.1 MD13G1207000.v1.1 MD16G1208600.v1.1
prunus_persica	Prupe.1G030600_v2.0.a1 Prupe.6G345200_v2.0.a1
pyrus_communis	pycom04g19970 pycom12g22260 pycom13g17930
rosa_chinensis	RchiOBHm_Chr3g0450581 RchiOBHm_Chr4g0390491
rosa_laevigata	RLG00000009921 RLG00000025719
rosa_multiflora	Rmu_sc0000078.1_g000043 Rmu_sc0005951.1_g000014 Rmu_sc0013467.1_g000008 Rmu_sc0030937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336490 Rroxscaffold_6G00428280
rosa_rugosa	Rorug02G0628800 Rorug03G0330900
rosa_samantha	Rh3AG029600 Rh3BG030000 Rh3CG028900 Rh3DG029700 Rh4AG032200 Rh4CG035700 Rh4DG028600
rosa_wichuraiana	Rw3G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	203
AciI	CCGC	2 cut(s)	27, 371
AclI	AACGTT	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	261, 419
AgsI	TTSAA	2 cut(s)	58, 73
AluBI	AGCT	3 cut(s)	32, 127, 227
AluI	AGCT	3 cut(s)	32, 127, 227
Alw21I	GWGCWC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	29, 32
ApoI	RAATTY	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	204
AsuC2I	CCSGG	1 cut(s)	414
AsuHPI	GGTGA	2 cut(s)	242, 283
BanII	GRGCYC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	19, 41
BccI	CCATC	1 cut(s)	264
BceAI	ACGGC	1 cut(s)	421
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BcnI	CCSGG	1 cut(s)	414
BfaI	CTAG	2 cut(s)	215, 438
BisI	GCNGC	2 cut(s)	30, 33
BlsI	GCNGC	2 cut(s)	31, 34
Bme1390I	CCNGG	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	3 cut(s)	79, 208, 306
BplI	GAGNNNNNCTC	2 cut(s)	69, 101
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	414
BsaWI	WCCGGW	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 419
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	261, 419
BseRI	GAGGAG	1 cut(s)	424
BseXI	GCAGC	2 cut(s)	19, 41
BsiHKAI	GWGCWC	1 cut(s)	129
BsiSI	CCGG	2 cut(s)	347, 414
BslI	CCNNNNNNNGG	2 cut(s)	261, 419
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	3 cut(s)	82, 115, 339
BspACI	CCGC	2 cut(s)	27, 371
BspQI	GCTCTTC	2 cut(s)	99, 134
BsrGI	TGTACA	1 cut(s)	309
BssMI	GATC	3 cut(s)	82, 115, 339
Bst6I	CTCTTC	3 cut(s)	41, 99, 134
BstAUI	TGTACA	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	3 cut(s)	85, 118, 342
BstMBI	GATC	3 cut(s)	82, 115, 339
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 409
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	412
BstV1I	GCAGC	2 cut(s)	19, 41
BtsCI	GGATG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	410
CfoI	GCGC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	3 cut(s)	103, 268, 419
CviJI	RGCY	8 cut(s)	5, 32, 127, 178, 185, 227, 238, 412
CviKI_1	RGCY	8 cut(s)	5, 32, 127, 178, 185, 227, 238, 412
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	3 cut(s)	84, 117, 341
DpnII	GATC	3 cut(s)	82, 115, 339
Eam1104I	CTCTTC	3 cut(s)	41, 99, 134
EarI	CTCTTC	3 cut(s)	41, 99, 134
Ecl136II	GAGCTC	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	374
EcoT38I	GRGCYC	1 cut(s)	129
FaeI	CATG	3 cut(s)	106, 271, 422
FaiI	YATR	6 cut(s)	104, 143, 182, 269, 278, 420
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	3 cut(s)	102, 267, 418
Fnu4HI	GCNGC	2 cut(s)	30, 33
FokI	GGATG	1 cut(s)	166
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	2 cut(s)	30, 33
FspBI	CTAG	2 cut(s)	215, 438
FspI	TGCGCA	1 cut(s)	203
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	2 cut(s)	30, 33
HapII	CCGG	2 cut(s)	347, 414
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	3 cut(s)	106, 271, 422
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	78
HpaII	CCGG	2 cut(s)	347, 414
HphI	GGTGA	2 cut(s)	242, 283
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188III	TCNNGA	4 cut(s)	86, 98, 193, 337
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	3 cut(s)	79, 144, 144
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 409
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	3 cut(s)	106, 271, 422
HspAI	GCGC	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	82, 115, 339
LguI	GCTCTTC	2 cut(s)	99, 134
LpnPI	CCDG	6 cut(s)	30, 213, 237, 294, 360, 427
Lsp1109I	GCAGC	2 cut(s)	19, 41
LweI	GCATC	3 cut(s)	79, 208, 306
MaeI	CTAG	2 cut(s)	215, 438
MaeII	ACGT	1 cut(s)	53
MalI	GATC	3 cut(s)	84, 117, 341
MboI	GATC	3 cut(s)	82, 115, 339
MboII	GAAGA	5 cut(s)	55, 58, 86, 121, 159
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	2 cut(s)	197, 374
MlyI	GAGTC	1 cut(s)	87
MnlI	CCTC	4 cut(s)	155, 165, 445, 459
MseI	TTAA	2 cut(s)	167, 327
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	2 cut(s)	32, 227
MspI	CCGG	2 cut(s)	347, 414
MspR9I	CCNGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	2 cut(s)	38, 409
NciI	CCSGG	1 cut(s)	414
NdeII	GATC	3 cut(s)	82, 115, 339
NlaIII	CATG	3 cut(s)	106, 271, 422
NsbI	TGCGCA	1 cut(s)	203
NspI	RCATGY	1 cut(s)	106
PciSI	GCTCTTC	2 cut(s)	99, 134
PkrI	GCNGC	2 cut(s)	31, 34
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	129
Psp1406I	AACGTT	1 cut(s)	53
PvuII	CAGCTG	2 cut(s)	32, 227
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	305
SacI	GAGCTC	1 cut(s)	129
SapI	GCTCTTC	2 cut(s)	99, 134
SaqAI	TTAA	2 cut(s)	167, 327
SatI	GCNGC	2 cut(s)	30, 33
Sau3AI	GATC	3 cut(s)	82, 115, 339
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	6 cut(s)	34, 56, 129, 229, 369, 443
SfaNI	GCATC	3 cut(s)	79, 208, 306
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	2 cut(s)	197, 374
SsiI	CCGC	2 cut(s)	27, 371
SspMI	CTAG	2 cut(s)	215, 438
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	412
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	5 cut(s)	12, 81, 87, 123, 336
TasI	AATT	2 cut(s)	197, 374
TatI	WGTACW	1 cut(s)	309
Tru1I	TTAA	2 cut(s)	167, 327
Tru9I	TTAA	2 cut(s)	167, 327
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	2 cut(s)	29, 32
TspRI	CASTG	1 cut(s)	115
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	1 cut(s)	106
XspI	CTAG	2 cut(s)	215, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.