Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002331

Physical Location & Seq

Genomic Coordinates Forward (+)

3832675 .. 3835991

Gene Structure 3317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGATTCAATCTCTCTTCTTTGTTTTCTGTCGAGAGAGAGACTTGCAGCAAAGGGAGGAGGAGCAATGCCGCTCCATCCAGCCGCGCCTCTGCCGTCGTCAGGCCGTCGTTGCGGATGTGGAAGCTGACGTGGCGGTGGCCGGAGTGCCGAAGAAGAGGACGTTCAAGAAGTTCAGCTTCAGAGGAGTGGATTTGGATGCTCTTCTGGACATGTCCACTGATGAGCTCGTTAAGCTCTTCCCTGCTACGGCTCGTAGAAGGTTTCAGAGGGGTTTGAAGAGGAAGCCAATGGCGTTGATCAAGAAGCTGCGCAAGGCTCCAAAGCCTAGAATTGATTATACTGTGAAGACTGTTGGTGGAAGCTTAACCACCCTCCTTGGAATATCAGATATGATTGATGCAGATGTCTTGGATATCCATGAGATACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

144

Amino Acids

16.38

Weight (kDa)

9.83

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04270 AT1G04270 AT1G33850 AT5G09490 AT5G09500 AT5G09510 AT5G09510 AT5G43640
fragaria_vesca	FvH4_1g16020 FvH4_2g04890 FvH4_4g02630 FvH4_6g02650
malus_domestica	MD00G1187800.v1.1 MD04G1226500.v1.1 MD12G1243500.v1.1 MD13G1207000.v1.1 MD16G1208600.v1.1
prunus_persica	Prupe.1G030600_v2.0.a1 Prupe.6G345200_v2.0.a1
pyrus_communis	pycom04g19970 pycom12g22260 pycom13g17930
rosa_chinensis	RchiOBHm_Chr3g0450581 RchiOBHm_Chr4g0390491
rosa_laevigata	RLG00000009921 RLG00000025719
rosa_multiflora	Rmu_sc0000078.1_g000043 Rmu_sc0005951.1_g000014 Rmu_sc0013467.1_g000008 Rmu_sc0030937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336490 Rroxscaffold_6G00428280
rosa_rugosa	Rorug02G0628800 Rorug03G0330900
rosa_samantha	Rh3AG029600 Rh3BG030000 Rh3CG028900 Rh3DG029700 Rh4AG032200 Rh4CG035700 Rh4DG028600
rosa_wichuraiana	Rw3G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	311
AccBSI	CCGCTC	1 cut(s)	72
AccII	CGCG	1 cut(s)	85
AciI	CCGC	4 cut(s)	70, 83, 113, 134
AcoI	YGGCCR	1 cut(s)	138
AcuI	CTGAAG	1 cut(s)	163
AfiI	CCNNNNNNNGG	2 cut(s)	100, 247
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	3 cut(s)	8, 166, 277
AjiI	CACGTC	1 cut(s)	130
AluBI	AGCT	6 cut(s)	125, 177, 226, 235, 307, 363
AluI	AGCT	6 cut(s)	125, 177, 226, 235, 307, 363
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	33
AoxI	GGCC	2 cut(s)	102, 138
ApeKI	GCWGC	2 cut(s)	46, 307
AspLEI	GCGC	2 cut(s)	87, 312
BanII	GRGCYC	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	58, 294
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	3 cut(s)	78, 89, 264
BclI	TGATCA	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	2 cut(s)	327, 430
BisI	GCNGC	4 cut(s)	47, 70, 83, 308
BlsI	GCNGC	4 cut(s)	48, 71, 84, 309
BmgBI	CACGTC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	318
BmsI	GCATC	2 cut(s)	187, 388
BpiI	GAAGAC	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 247
Bse3DI	GCAATG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	376
BseGI	GGATG	3 cut(s)	75, 121, 202
BseLI	CCNNNNNNNGG	2 cut(s)	100, 247
BseMI	GCAATG	1 cut(s)	71
BseRI	GAGGAG	3 cut(s)	71, 74, 198
BseXI	GCAGC	2 cut(s)	58, 294
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	104, 140
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	100, 247
BsmAI	GTCTC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	104, 140
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	297
BspACI	CCGC	4 cut(s)	70, 83, 113, 134
BspANI	GGCC	2 cut(s)	104, 140
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	318
BspQI	GCTCTTC	2 cut(s)	207, 242
BsrBI	CCGCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	376
Bst4CI	ACNGT	2 cut(s)	343, 352
Bst6I	CTCTTC	5 cut(s)	20, 149, 207, 242, 272
BstF5I	GGATG	3 cut(s)	75, 121, 202
BstFNI	CGCG	1 cut(s)	85
BstHHI	GCGC	2 cut(s)	87, 312
BstKTI	GATC	1 cut(s)	300
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 131, 232
BstNSI	RCATGY	1 cut(s)	214
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	2 cut(s)	58, 294
BstV2I	GAAGAC	1 cut(s)	353
BsuRI	GGCC	2 cut(s)	104, 140
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	3 cut(s)	75, 121, 202
BtsIMutI	CAGTG	1 cut(s)	216
CfoI	GCGC	2 cut(s)	87, 312
CspCI	CAANNNNNGTGG	2 cut(s)	358, 393
CviAII	CATG	2 cut(s)	211, 419
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	5 cut(s)	20, 149, 207, 242, 272
EarI	CTCTTC	5 cut(s)	20, 149, 207, 242, 272
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	228
Eco32I	GATATC	1 cut(s)	415
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	163
EcoICRI	GAGCTC	1 cut(s)	226
EcoRV	GATATC	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	2 cut(s)	214, 422
FaiI	YATR	4 cut(s)	212, 339, 392, 420
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	2 cut(s)	210, 418
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	4 cut(s)	47, 70, 83, 308
FokI	GGATG	3 cut(s)	62, 128, 209
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	4 cut(s)	47, 70, 83, 308
FspBI	CTAG	2 cut(s)	327, 430
FspI	TGCGCA	1 cut(s)	311
GlaI	GCGC	2 cut(s)	86, 311
GluI	GCNGC	4 cut(s)	47, 70, 83, 308
HaeIII	GGCC	2 cut(s)	104, 140
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	2 cut(s)	87, 312
Hin1II	CATG	2 cut(s)	214, 422
Hin6I	GCGC	2 cut(s)	85, 310
HinP1I	GCGC	2 cut(s)	85, 310
HindIII	AAGCTT	1 cut(s)	361
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	141
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	3 cut(s)	182, 267, 388
Hpy188III	TCNNGA	4 cut(s)	32, 166, 206, 301
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	2 cut(s)	99, 110
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	2 cut(s)	343, 352
HpyCH4IV	ACGT	2 cut(s)	129, 161
HpyCH4V	TGCA	2 cut(s)	46, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 131, 232
HpySE526I	ACGT	2 cut(s)	129, 161
Hsp92II	CATG	2 cut(s)	214, 422
HspAI	GCGC	2 cut(s)	85, 310
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	1 cut(s)	297
LguI	GCTCTTC	2 cut(s)	207, 242
LmnI	GCTCC	3 cut(s)	61, 77, 322
LpnPI	CCDG	5 cut(s)	86, 92, 154, 191, 255
Lsp1109I	GCAGC	2 cut(s)	58, 294
LweI	GCATC	2 cut(s)	187, 388
MaeI	CTAG	2 cut(s)	327, 430
MaeII	ACGT	2 cut(s)	129, 161
MalI	GATC	1 cut(s)	299
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	1 cut(s)	297
MboII	GAAGA	7 cut(s)	7, 163, 166, 194, 229, 289, 358
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	1 cut(s)	330
MnlI	CCTC	8 cut(s)	49, 52, 98, 150, 176, 261, 273, 383
MseI	TTAA	2 cut(s)	231, 365
MspI	CCGG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	3 cut(s)	110, 131, 232
NdeII	GATC	1 cut(s)	297
NlaIII	CATG	2 cut(s)	214, 422
NlaIV	GGNNCC	1 cut(s)	318
NsbI	TGCGCA	1 cut(s)	311
NspI	RCATGY	1 cut(s)	214
PciI	ACATGT	1 cut(s)	210
PciSI	GCTCTTC	2 cut(s)	207, 242
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	4 cut(s)	48, 71, 84, 309
PscI	ACATGT	1 cut(s)	210
Psp124BI	GAGCTC	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	318
SacI	GAGCTC	1 cut(s)	228
SapI	GCTCTTC	2 cut(s)	207, 242
SaqAI	TTAA	2 cut(s)	231, 365
SatI	GCNGC	4 cut(s)	47, 70, 83, 308
Sau3AI	GATC	1 cut(s)	297
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	9 cut(s)	127, 132, 164, 179, 228, 237, 263, 309, 365
SfaNI	GCATC	2 cut(s)	187, 388
Sse9I	AATT	1 cut(s)	330
SsiI	CCGC	4 cut(s)	70, 83, 113, 134
SspMI	CTAG	2 cut(s)	327, 430
SstI	GAGCTC	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	2 cut(s)	343, 352
TaiI	ACGT	2 cut(s)	132, 164
TaqI	TCGA	1 cut(s)	31
TasI	AATT	1 cut(s)	330
TauI	GCSGC	2 cut(s)	72, 85
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	231, 365
Tru9I	TTAA	2 cut(s)	231, 365
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	2 cut(s)	46, 307
TspRI	CASTG	1 cut(s)	223
XceI	RCATGY	1 cut(s)	214
XspI	CTAG	2 cut(s)	327, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.