Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002331

Physical Location & Seq

Genomic Coordinates Reverse (-)

2387388 .. 2389306

Gene Structure 1919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g02630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCGGACGTTGAGACCGATGTTGCGGCGGCCGGAGTCCCAAAGAAAAGAACGTTCAAGAAGTTCAGCTTCAGAGGCGTCGATCTGGATGCTTTGCTCGACATGTCAACTGACGAACTCGTCAAGCTCTTCCCTGCTCGAGCTCGCAGAAGGTTCCAGAGAGGTCTGAAGCGCAAGCCCATGGCTTTGATCAAGAAGCTTCGCAAAGCGAAACGGGAGGCCCCACCTGGTGAGAAGCCGGAGCCAGTTCGTACCCATCTGCGTAATATGATTATAGTACCAGAGATGATTGGAAGCATTATTGGTGTTTACAATGGGAAGACCTTCAATCAGGTTGAAATCAAGCCTGAGATGATTAGTCACTACCTTGCTGAGTTCTCAATTTCATACAAGCCTGTGAAGCACGGTAGACCTGGTATCGGTGCCACCCACTCTTCAAGGTTCATTCCTCTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

153

Amino Acids

17.21

Weight (kDa)

10.44

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19	PF00203	50 - 135	3.3e-33	Ribosomal protein S19

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04270 AT1G04270 AT1G33850 AT5G09490 AT5G09500 AT5G09510 AT5G09510 AT5G43640
fragaria_vesca	FvH4_1g16020 FvH4_2g04890 FvH4_4g02630 FvH4_6g02650
malus_domestica	MD00G1187800.v1.1 MD04G1226500.v1.1 MD12G1243500.v1.1 MD13G1207000.v1.1 MD16G1208600.v1.1
prunus_persica	Prupe.1G030600_v2.0.a1 Prupe.6G345200_v2.0.a1
pyrus_communis	pycom04g19970 pycom12g22260 pycom13g17930
rosa_chinensis	RchiOBHm_Chr3g0450581 RchiOBHm_Chr4g0390491
rosa_laevigata	RLG00000009921 RLG00000025719
rosa_multiflora	Rmu_sc0000078.1_g000043 Rmu_sc0005951.1_g000014 Rmu_sc0013467.1_g000008 Rmu_sc0030937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336490 Rroxscaffold_6G00428280
rosa_rugosa	Rorug02G0628800 Rorug03G0330900
rosa_samantha	Rh3AG029600 Rh3BG030000 Rh3CG028900 Rh3DG029700 Rh4AG032200 Rh4CG035700 Rh4DG028600
rosa_wichuraiana	Rw3G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	409
AciI	CCGC	3 cut(s)	5, 26, 29
AclI	AACGTT	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	30
AcuI	CTGAAG	2 cut(s)	55, 188
AcyI	GRCGYC	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	230
AfaI	GTAC	2 cut(s)	253, 279
AfiI	CCNNNNNNNGG	1 cut(s)	419
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	4 cut(s)	58, 328, 338, 438
AjnI	CCWGG	2 cut(s)	226, 412
AluBI	AGCT	4 cut(s)	69, 127, 143, 199
AluI	AGCT	4 cut(s)	69, 127, 143, 199
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	8
Ama87I	CYCGRG	1 cut(s)	138
AoxI	GGCC	2 cut(s)	30, 219
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	138
BanI	GGYRCC	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	145
BccI	CCATC	1 cut(s)	264
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	2 cut(s)	228, 414
BclI	TGATCA	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	8
BisI	GCNGC	2 cut(s)	27, 30
BlsI	GCNGC	2 cut(s)	28, 31
Bme1390I	CCNGG	2 cut(s)	228, 414
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	4 cut(s)	155, 222, 243, 424
BmrFI	CCNGG	2 cut(s)	228, 414
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	2 cut(s)	228, 414
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMII	CTCAG	2 cut(s)	339, 363
BseNI	ACTGG	1 cut(s)	245
BseX3I	CGGCCG	1 cut(s)	30
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	32, 221
BshNI	GGYRCC	1 cut(s)	422
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	33, 239
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	32, 221
Bso31I	GGTCTC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	82, 189
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	3 cut(s)	5, 26, 29
BspANI	GGCC	2 cut(s)	32, 221
BspCNI	CTCAG	2 cut(s)	340, 364
BspLI	GGNNCC	4 cut(s)	155, 222, 243, 424
BspQI	GCTCTTC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	422
BspTNI	GGTCTC	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	2 cut(s)	82, 189
BssNI	GRCGYC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	2 cut(s)	228, 414
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	2 cut(s)	134, 439
BstACI	GRCGYC	1 cut(s)	78
BstC8I	GCNNGC	2 cut(s)	145, 176
BstDEI	CTNAG	2 cut(s)	348, 372
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	2 cut(s)	85, 192
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	2 cut(s)	82, 189
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 400
BstNI	CCWGG	2 cut(s)	228, 414
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	226, 412
BstV2I	GAAGAC	1 cut(s)	326
BstZI	CGGCCG	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	32, 221
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	145, 176
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	220
CseI	GACGC	1 cut(s)	67
CsiI	ACCWGGT	2 cut(s)	226, 412
Csp6I	GTAC	2 cut(s)	252, 278
CviAII	CATG	2 cut(s)	103, 181
CviQI	GTAC	2 cut(s)	252, 278
DdeI	CTNAG	2 cut(s)	348, 372
DpnI	GATC	2 cut(s)	84, 191
DpnII	GATC	2 cut(s)	82, 189
DraIII	CACNNNGTG	1 cut(s)	230
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	30
EagI	CGGCCG	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	134, 439
EarI	CTCTTC	2 cut(s)	134, 439
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	143
EclXI	CGGCCG	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	145
Eco31I	GGTCTC	1 cut(s)	8
Eco52I	CGGCCG	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	143
Eco57I	CTGAAG	2 cut(s)	55, 188
Eco88I	CYCGRG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	2 cut(s)	226, 412
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	2 cut(s)	106, 184
FaiI	YATR	5 cut(s)	104, 182, 269, 275, 388
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	2 cut(s)	102, 180
FbaI	TGATCA	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	409
Fnu4HI	GCNGC	2 cut(s)	27, 30
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	2 cut(s)	27, 30
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	2 cut(s)	27, 30
HaeIII	GGCC	2 cut(s)	32, 221
HapII	CCGG	2 cut(s)	33, 239
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	106, 184
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	1 cut(s)	36
HpaII	CCGG	2 cut(s)	33, 239
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	3 cut(s)	108, 310, 410
Hpy188I	TCNGA	2 cut(s)	74, 168
Hpy188III	TCNNGA	4 cut(s)	58, 86, 157, 193
Hpy8I	GTNNAC	3 cut(s)	108, 310, 410
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	144, 334
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	2 cut(s)	9, 53
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 400
HpyF3I	CTNAG	2 cut(s)	348, 372
HpySE526I	ACGT	2 cut(s)	9, 53
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	106, 184
HspAI	GCGC	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	82, 189
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	241
LweI	GCATC	1 cut(s)	79
MabI	ACCWGGT	2 cut(s)	226, 412
MaeII	ACGT	2 cut(s)	9, 53
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	2 cut(s)	84, 191
MboI	GATC	2 cut(s)	82, 189
MboII	GAAGA	3 cut(s)	121, 331, 426
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	4 cut(s)	68, 155, 211, 459
MroXI	GAANNNNTTC	1 cut(s)	323
MspI	CCGG	2 cut(s)	33, 239
MspR9I	CCNGG	2 cut(s)	228, 414
MvaI	CCWGG	2 cut(s)	228, 414
MwoI	GCNNNNNNNGC	2 cut(s)	75, 400
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	2 cut(s)	82, 189
NlaIII	CATG	2 cut(s)	106, 184
NlaIV	GGNNCC	4 cut(s)	155, 222, 243, 424
NmuCI	GTSAC	1 cut(s)	359
NspI	RCATGY	1 cut(s)	106
PaeR7I	CTCGAG	1 cut(s)	138
PciI	ACATGT	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	323
PkrI	GCNGC	2 cut(s)	28, 31
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PscI	ACATGT	1 cut(s)	102
Psp124BI	GAGCTC	1 cut(s)	145
Psp1406I	AACGTT	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	226, 412
PspGI	CCWGG	2 cut(s)	226, 412
PspN4I	GGNNCC	4 cut(s)	155, 222, 243, 424
PspPI	GGNCC	1 cut(s)	220
PspXI	VCTCGAGB	1 cut(s)	138
RsaI	GTAC	2 cut(s)	253, 279
RsaNI	GTAC	2 cut(s)	252, 278
SacI	GAGCTC	1 cut(s)	145
SapI	GCTCTTC	1 cut(s)	134
SatI	GCNGC	2 cut(s)	27, 30
Sau3AI	GATC	2 cut(s)	82, 189
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	2 cut(s)	228, 414
SduI	GDGCHC	1 cut(s)	145
SexAI	ACCWGGT	2 cut(s)	226, 412
SfaNI	GCATC	1 cut(s)	79
Sfr274I	CTCGAG	1 cut(s)	138
SlaI	CTCGAG	1 cut(s)	138
SmlI	CTYRAG	2 cut(s)	138, 452
SmoI	CTYRAG	2 cut(s)	138, 452
Sse9I	AATT	1 cut(s)	381
SsiI	CCGC	3 cut(s)	5, 26, 29
SstI	GAGCTC	1 cut(s)	145
StyD4I	CCNGG	2 cut(s)	226, 412
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	2 cut(s)	12, 56
TaqI	TCGA	3 cut(s)	81, 99, 139
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	1 cut(s)	381
TauI	GCSGC	2 cut(s)	29, 32
TseFI	GTSAC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	2 cut(s)	375, 433
XceI	RCATGY	1 cut(s)	106
XhoI	CTCGAG	1 cut(s)	138
XmiI	GTMKAC	1 cut(s)	409
XmnI	GAANNNNTTC	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.