Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002331

Physical Location & Seq

Genomic Coordinates Reverse (-)

19594935 .. 19596869

Gene Structure 1935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1208600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCTGACGTTGAGGCCGATGTTGCGGCGGCCGGAGTTCCGAAGAAGAGAACATTTAAGAAGTTCAGCTTCAGGGGCGTCGATTTGGATGCTCTCCTCGACATGTCCACCGATGAGCTTGTCAAGCTCTTCCCTGCCAGAGCTCGCAGAAGGTTTCAGAGGGGTCTGAAGCGCAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAAGCGAAAAGAGAGGCTCCACCCGGTGAAAAGCCAGAGCCAGTCCGTACTCACCTGCGTAACATGATTATAGTTCCGGAAATGATTGGAAGCATCATTGGAGTGTACAATGGTAAGACCTTCAATCAGGTTGAAATCAAGCCTGAGATGATCAGCCACTACCTTGCTGAGTTCTCAATCTCATACAAGCCTGTGAAGCATGGTAGACCTGGTATTGGTGCCACGCACTCTTCGAGGTTCATTCCTCTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

153

Amino Acids

17.18

Weight (kDa)

10.44

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19	PF00203	50 - 135	3.3e-33	Ribosomal protein S19

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04270 AT1G04270 AT1G33850 AT5G09490 AT5G09500 AT5G09510 AT5G09510 AT5G43640
fragaria_vesca	FvH4_1g16020 FvH4_2g04890 FvH4_4g02630 FvH4_6g02650
malus_domestica	MD00G1187800.v1.1 MD04G1226500.v1.1 MD12G1243500.v1.1 MD13G1207000.v1.1 MD16G1208600.v1.1
prunus_persica	Prupe.1G030600_v2.0.a1 Prupe.6G345200_v2.0.a1
pyrus_communis	pycom04g19970 pycom12g22260 pycom13g17930
rosa_chinensis	RchiOBHm_Chr3g0450581 RchiOBHm_Chr4g0390491
rosa_laevigata	RLG00000009921 RLG00000025719
rosa_multiflora	Rmu_sc0000078.1_g000043 Rmu_sc0005951.1_g000014 Rmu_sc0013467.1_g000008 Rmu_sc0030937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336490 Rroxscaffold_6G00428280
rosa_rugosa	Rorug02G0628800 Rorug03G0330900
rosa_samantha	Rh3AG029600 Rh3BG030000 Rh3CG028900 Rh3DG029700 Rh4AG032200 Rh4CG035700 Rh4DG028600
rosa_wichuraiana	Rw3G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	267
Acc16I	TGCGCA	1 cut(s)	203
Acc36I	ACCTGC	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	409
AccIII	TCCGGA	1 cut(s)	280
AciI	CCGC	2 cut(s)	26, 29
AcoI	YGGCCR	1 cut(s)	30
AcuI	CTGAAG	2 cut(s)	55, 188
AcyI	GRCGYC	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	230
AfaI	GTAC	2 cut(s)	253, 311
AfiI	CCNNNNNNNGG	1 cut(s)	419
AflII	CTTAAG	1 cut(s)	452
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	2 cut(s)	328, 338
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	5 cut(s)	69, 118, 127, 143, 199
AluI	AGCT	5 cut(s)	69, 118, 127, 143, 199
Alw21I	GWGCWC	1 cut(s)	145
Aor13HI	TCCGGA	1 cut(s)	280
AoxI	GGCC	2 cut(s)	15, 30
ApeKI	GCWGC	1 cut(s)	199
AspLEI	GCGC	2 cut(s)	174, 204
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	2 cut(s)	242, 248
BanI	GGYRCC	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	186
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	1 cut(s)	414
BclI	TGATCA	2 cut(s)	189, 354
BcnI	CCSGG	1 cut(s)	228
BfrI	CTTAAG	1 cut(s)	452
BfuAI	ACCTGC	1 cut(s)	267
BisI	GCNGC	3 cut(s)	27, 30, 200
BlsI	GCNGC	3 cut(s)	28, 31, 201
Bme1390I	CCNGG	2 cut(s)	228, 414
BmiI	GGNNCC	2 cut(s)	222, 424
BmrFI	CCNGG	2 cut(s)	228, 414
BmsI	GCATC	2 cut(s)	79, 306
BpuMI	CCSGG	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	245
BseAI	TCCGGA	1 cut(s)	280
BseBI	CCWGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMII	CTCAG	2 cut(s)	339, 363
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	86
BseX3I	CGGCCG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	186
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	17, 32
BshNI	GGYRCC	1 cut(s)	422
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	3 cut(s)	33, 228, 281
BslI	CCNNNNNNNGG	1 cut(s)	419
BsnI	GGCC	2 cut(s)	17, 32
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp13I	TCCGGA	1 cut(s)	280
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	189, 354
BspACI	CCGC	2 cut(s)	26, 29
BspANI	GGCC	2 cut(s)	17, 32
BspCNI	CTCAG	2 cut(s)	340, 364
BspEI	TCCGGA	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	222, 424
BspMI	ACCTGC	1 cut(s)	267
BspQI	GCTCTTC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	422
BspTI	CTTAAG	1 cut(s)	452
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	245
BssMI	GATC	2 cut(s)	189, 354
BssNI	GRCGYC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	414
Bst6I	CTCTTC	3 cut(s)	41, 134, 439
BstACI	GRCGYC	1 cut(s)	78
BstAFI	CTTAAG	1 cut(s)	452
BstAUI	TGTACA	1 cut(s)	309
BstC8I	GCNNGC	2 cut(s)	145, 176
BstDEI	CTNAG	2 cut(s)	348, 372
BstF5I	GGATG	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	174, 204
BstKTI	GATC	2 cut(s)	192, 357
BstMBI	GATC	2 cut(s)	189, 354
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 75, 124, 400
BstNI	CCWGG	1 cut(s)	414
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	226, 412
BstV1I	GCAGC	1 cut(s)	186
BstZI	CGGCCG	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	17, 32
BtsCI	GGATG	1 cut(s)	94
BveI	ACCTGC	1 cut(s)	267
Cac8I	GCNNGC	2 cut(s)	145, 176
CfoI	GCGC	2 cut(s)	174, 204
CseI	GACGC	1 cut(s)	67
CsiI	ACCWGGT	1 cut(s)	412
Csp6I	GTAC	2 cut(s)	252, 310
CviAII	CATG	3 cut(s)	103, 268, 404
CviQI	GTAC	2 cut(s)	252, 310
DdeI	CTNAG	2 cut(s)	348, 372
DpnI	GATC	2 cut(s)	191, 356
DpnII	GATC	2 cut(s)	189, 354
DraIII	CACNNNGTG	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	30
EagI	CGGCCG	1 cut(s)	30
Eam1104I	CTCTTC	3 cut(s)	41, 134, 439
EarI	CTCTTC	3 cut(s)	41, 134, 439
Ecl136II	GAGCTC	1 cut(s)	143
EclXI	CGGCCG	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	145
Eco52I	CGGCCG	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	143
Eco57I	CTGAAG	2 cut(s)	55, 188
EcoICRI	GAGCTC	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	145
FaeI	CATG	3 cut(s)	106, 271, 407
FaiI	YATR	6 cut(s)	104, 182, 269, 275, 388, 405
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	3 cut(s)	102, 267, 403
FbaI	TGATCA	2 cut(s)	189, 354
FblI	GTMKAC	1 cut(s)	409
Fnu4HI	GCNGC	3 cut(s)	27, 30, 200
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	3 cut(s)	27, 30, 200
FspI	TGCGCA	1 cut(s)	203
GlaI	GCGC	2 cut(s)	173, 203
GluI	GCNGC	3 cut(s)	27, 30, 200
HaeIII	GGCC	2 cut(s)	17, 32
HapII	CCGG	3 cut(s)	33, 228, 281
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	2 cut(s)	174, 204
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	3 cut(s)	106, 271, 407
Hin6I	GCGC	2 cut(s)	172, 202
HinP1I	GCGC	2 cut(s)	172, 202
HpaII	CCGG	3 cut(s)	33, 228, 281
HphI	GGTGA	2 cut(s)	242, 248
Hpy166II	GTNNAC	3 cut(s)	108, 310, 410
Hpy188I	TCNGA	3 cut(s)	42, 159, 168
Hpy188III	TCNNGA	2 cut(s)	193, 281
Hpy8I	GTNNAC	3 cut(s)	108, 310, 410
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	144, 334
HpyCH4IV	ACGT	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 75, 124, 400
HpyF3I	CTNAG	2 cut(s)	348, 372
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	3 cut(s)	106, 271, 407
HspAI	GCGC	2 cut(s)	172, 202
Kpn2I	TCCGGA	1 cut(s)	280
Ksp22I	TGATCA	2 cut(s)	189, 354
Kzo9I	GATC	2 cut(s)	189, 354
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	2 cut(s)	79, 306
MabI	ACCWGGT	1 cut(s)	412
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	2 cut(s)	191, 356
MboI	GATC	2 cut(s)	189, 354
MboII	GAAGA	4 cut(s)	55, 58, 121, 426
MhlI	GDGCHC	1 cut(s)	145
MnlI	CCTC	6 cut(s)	7, 107, 153, 211, 432, 459
MroI	TCCGGA	1 cut(s)	280
MseI	TTAA	2 cut(s)	57, 453
MslI	CAYNNNNRTG	1 cut(s)	305
MspCI	CTTAAG	1 cut(s)	452
MspI	CCGG	3 cut(s)	33, 228, 281
MspR9I	CCNGG	2 cut(s)	228, 414
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	4 cut(s)	23, 75, 124, 400
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	2 cut(s)	189, 354
NlaIII	CATG	3 cut(s)	106, 271, 407
NlaIV	GGNNCC	2 cut(s)	222, 424
NsbI	TGCGCA	1 cut(s)	203
NspI	RCATGY	1 cut(s)	106
PaqCI	CACCTGC	1 cut(s)	267
PciI	ACATGT	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 434
PkrI	GCNGC	3 cut(s)	28, 31, 201
PscI	ACATGT	1 cut(s)	102
Psp124BI	GAGCTC	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	2 cut(s)	222, 424
RsaI	GTAC	2 cut(s)	253, 311
RsaNI	GTAC	2 cut(s)	252, 310
RseI	CAYNNNNRTG	1 cut(s)	305
SacI	GAGCTC	1 cut(s)	145
SapI	GCTCTTC	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	57, 453
SatI	GCNGC	3 cut(s)	27, 30, 200
Sau3AI	GATC	2 cut(s)	189, 354
ScrFI	CCNGG	2 cut(s)	228, 414
SduI	GDGCHC	1 cut(s)	145
SexAI	ACCWGGT	1 cut(s)	412
SfaNI	GCATC	2 cut(s)	79, 306
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
SsiI	CCGC	2 cut(s)	26, 29
SstI	GAGCTC	1 cut(s)	145
StyD4I	CCNGG	2 cut(s)	226, 412
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	3 cut(s)	81, 99, 437
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	2 cut(s)	29, 32
Tru1I	TTAA	2 cut(s)	57, 453
Tru9I	TTAA	2 cut(s)	57, 453
TseI	GCWGC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	433
TspGWI	ACGGA	1 cut(s)	239
Vha464I	CTTAAG	1 cut(s)	452
XceI	RCATGY	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.