Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002331

Physical Location & Seq

Genomic Coordinates Reverse (-)

29629665 .. 29632935

Gene Structure 3271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G345200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCGGATGTGGAGGCTGATGTGGCGGTGGCCGGAGTGCCTAAGAAGAGGACGTTTAAGAAGTTCAGCTTCAGAGGCGTCGATTTGGATGCTCTTCTTGATATGTCCACTGATGAGCTCGTTAAGCTCTTCCCTGCCAGGGCTCGCAGAAGGTTTCAGAGAGGTTTGAAAAGAAAGCCAATGGCATTGATCAAGAAGCTGCGCAAAGCTAAAAGGGAGGCACCACCAGGTGAGAAACCGGAGCCAGTTAGGACTCACCTACGAAACATGATCATTGTACCCGAAATGATCGGGAGCATCATTGGAGTTTACAATGGCAAGACCTTCAATCAGGTTGAGATCAAGCCAGAAATGATCAGCCATTATCTTGCTGAGTTCTCTATAAGTTACAAGCCTGTGAAGCACGGAAGGCCTGGTATTGGTGCTACTCACTCTTCTAGGTTCATTCCCCTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

153

Amino Acids

17.21

Weight (kDa)

10.44

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04270 AT1G04270 AT1G33850 AT5G09490 AT5G09500 AT5G09510 AT5G09510 AT5G43640
fragaria_vesca	FvH4_1g16020 FvH4_2g04890 FvH4_4g02630 FvH4_6g02650
malus_domestica	MD00G1187800.v1.1 MD04G1226500.v1.1 MD12G1243500.v1.1 MD13G1207000.v1.1 MD16G1208600.v1.1
prunus_persica	Prupe.1G030600_v2.0.a1 Prupe.6G345200_v2.0.a1
pyrus_communis	pycom04g19970 pycom12g22260 pycom13g17930
rosa_chinensis	RchiOBHm_Chr3g0450581 RchiOBHm_Chr4g0390491
rosa_laevigata	RLG00000009921 RLG00000025719
rosa_multiflora	Rmu_sc0000078.1_g000043 Rmu_sc0005951.1_g000014 Rmu_sc0013467.1_g000008 Rmu_sc0030937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336490 Rroxscaffold_6G00428280
rosa_rugosa	Rorug02G0628800 Rorug03G0330900
rosa_samantha	Rh3AG029600 Rh3BG030000 Rh3CG028900 Rh3DG029700 Rh4AG032200 Rh4CG035700 Rh4DG028600
rosa_wichuraiana	Rw3G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	220
AciI	CCGC	2 cut(s)	5, 26
AcoI	YGGCCR	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	55
AcyI	GRCGYC	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	2 cut(s)	139, 419
AflII	CTTAAG	1 cut(s)	452
AgsI	TTSAA	2 cut(s)	169, 328
AjnI	CCWGG	3 cut(s)	137, 226, 412
AluBI	AGCT	5 cut(s)	69, 118, 127, 199, 209
AluI	AGCT	5 cut(s)	69, 118, 127, 199, 209
Alw21I	GWGCWC	1 cut(s)	120
AoxI	GGCC	2 cut(s)	30, 410
ApeKI	GCWGC	1 cut(s)	199
AspLEI	GCGC	1 cut(s)	204
AsuHPI	GGTGA	2 cut(s)	242, 248
BanI	GGYRCC	1 cut(s)	220
BanII	GRGCYC	2 cut(s)	120, 145
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	186
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	3 cut(s)	139, 228, 414
BclI	TGATCA	3 cut(s)	189, 270, 354
BfaI	CTAG	1 cut(s)	438
BfrI	CTTAAG	1 cut(s)	452
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
Bme1390I	CCNGG	3 cut(s)	139, 228, 414
BmiI	GGNNCC	2 cut(s)	222, 243
BmrFI	CCNGG	3 cut(s)	139, 228, 414
BmsI	GCATC	2 cut(s)	79, 306
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 419
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	3 cut(s)	139, 228, 414
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	13, 94
BseLI	CCNNNNNNNGG	2 cut(s)	139, 419
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	186
BshFI	GGCC	2 cut(s)	32, 412
BshNI	GGYRCC	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	33, 239
BslI	CCNNNNNNNGG	2 cut(s)	139, 419
BsnI	GGCC	2 cut(s)	32, 412
Bsp1286I	GDGCHC	2 cut(s)	120, 145
Bsp143I	GATC	5 cut(s)	189, 270, 288, 339, 354
BspACI	CCGC	2 cut(s)	5, 26
BspANI	GGCC	2 cut(s)	32, 412
BspCNI	CTCAG	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	222, 243
BspQI	GCTCTTC	2 cut(s)	99, 134
BspT107I	GGYRCC	1 cut(s)	220
BspTI	CTTAAG	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	5 cut(s)	189, 270, 288, 339, 354
BssNI	GRCGYC	1 cut(s)	78
Bst2UI	CCWGG	3 cut(s)	139, 228, 414
Bst6I	CTCTTC	4 cut(s)	41, 99, 134, 439
BstACI	GRCGYC	1 cut(s)	78
BstAFI	CTTAAG	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	42, 372
BstF5I	GGATG	2 cut(s)	13, 94
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	5 cut(s)	192, 273, 291, 342, 357
BstMBI	GATC	5 cut(s)	189, 270, 288, 339, 354
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 75, 124, 400, 409
BstNI	CCWGG	3 cut(s)	139, 228, 414
BstSCI	CCNGG	3 cut(s)	137, 226, 412
BstV1I	GCAGC	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	32, 412
BtsCI	GGATG	2 cut(s)	13, 94
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	145
CfoI	GCGC	1 cut(s)	204
CseI	GACGC	1 cut(s)	67
CsiI	ACCWGGT	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	1 cut(s)	268
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	2 cut(s)	42, 372
DpnI	GATC	5 cut(s)	191, 272, 290, 341, 356
DpnII	GATC	5 cut(s)	189, 270, 288, 339, 354
DraIII	CACNNNGTG	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	4 cut(s)	41, 99, 134, 439
EarI	CTCTTC	4 cut(s)	41, 99, 134, 439
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	412
Eco24I	GRGCYC	2 cut(s)	120, 145
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	118
EcoRII	CCWGG	3 cut(s)	137, 226, 412
EcoT38I	GRGCYC	2 cut(s)	120, 145
FaeI	CATG	1 cut(s)	271
FaiI	YATR	3 cut(s)	104, 269, 383
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	1 cut(s)	267
FbaI	TGATCA	3 cut(s)	189, 270, 354
Fnu4HI	GCNGC	1 cut(s)	200
FokI	GGATG	2 cut(s)	20, 101
FriOI	GRGCYC	2 cut(s)	120, 145
Fsp4HI	GCNGC	1 cut(s)	200
FspBI	CTAG	1 cut(s)	438
FspI	TGCGCA	1 cut(s)	203
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	32, 412
HapII	CCGG	2 cut(s)	33, 239
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	204
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	2 cut(s)	33, 239
HphI	GGTGA	2 cut(s)	242, 248
Hpy166II	GTNNAC	2 cut(s)	108, 310
Hpy188I	TCNGA	2 cut(s)	74, 159
Hpy188III	TCNNGA	3 cut(s)	98, 193, 292
Hpy8I	GTNNAC	2 cut(s)	108, 310
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	3 cut(s)	144, 334, 402
HpyCH4IV	ACGT	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 75, 124, 400, 409
HpyF3I	CTNAG	2 cut(s)	42, 372
HpySE526I	ACGT	1 cut(s)	53
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	271
HspAI	GCGC	1 cut(s)	202
Ksp22I	TGATCA	3 cut(s)	189, 270, 354
Kzo9I	GATC	5 cut(s)	189, 270, 288, 339, 354
LguI	GCTCTTC	2 cut(s)	99, 134
LmnI	GCTCC	2 cut(s)	241, 294
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	2 cut(s)	79, 306
MabI	ACCWGGT	1 cut(s)	226
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	5 cut(s)	191, 272, 290, 341, 356
MboI	GATC	5 cut(s)	189, 270, 288, 339, 354
MboII	GAAGA	4 cut(s)	58, 86, 121, 426
MhlI	GDGCHC	2 cut(s)	120, 145
MlyI	GAGTC	1 cut(s)	247
MnlI	CCTC	5 cut(s)	7, 42, 68, 155, 211
MseI	TTAA	3 cut(s)	57, 123, 453
MspCI	CTTAAG	1 cut(s)	452
MspI	CCGG	2 cut(s)	33, 239
MspR9I	CCNGG	3 cut(s)	139, 228, 414
MvaI	CCWGG	3 cut(s)	139, 228, 414
MwoI	GCNNNNNNNGC	5 cut(s)	23, 75, 124, 400, 409
NdeII	GATC	5 cut(s)	189, 270, 288, 339, 354
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	2 cut(s)	222, 243
NsbI	TGCGCA	1 cut(s)	203
PceI	AGGCCT	1 cut(s)	412
PciSI	GCTCTTC	2 cut(s)	99, 134
PkrI	GCNGC	1 cut(s)	201
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	3 cut(s)	137, 226, 412
PspGI	CCWGG	3 cut(s)	137, 226, 412
PspN4I	GGNNCC	2 cut(s)	222, 243
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
SacI	GAGCTC	1 cut(s)	120
SapI	GCTCTTC	2 cut(s)	99, 134
SaqAI	TTAA	3 cut(s)	57, 123, 453
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	5 cut(s)	189, 270, 288, 339, 354
SchI	GAGTC	1 cut(s)	247
ScrFI	CCNGG	3 cut(s)	139, 228, 414
SduI	GDGCHC	2 cut(s)	120, 145
SexAI	ACCWGGT	1 cut(s)	226
SfaNI	GCATC	2 cut(s)	79, 306
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	2 cut(s)	5, 26
SspMI	CTAG	1 cut(s)	438
SstI	GAGCTC	1 cut(s)	120
StuI	AGGCCT	1 cut(s)	412
StyD4I	CCNGG	3 cut(s)	137, 226, 412
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	81
Tru1I	TTAA	3 cut(s)	57, 123, 453
Tru9I	TTAA	3 cut(s)	57, 123, 453
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	433
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	1 cut(s)	115
Vha464I	CTTAAG	1 cut(s)	452
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.