Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002331

Physical Location & Seq

Genomic Coordinates Forward (+)

17531302 .. 17532499

Gene Structure 1198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAACCAGAGGTTGTTGCGGCTGGAATTGTGAAAAAGAGAACCTTCAAAAAGTTTTCTTTCAGAGGAGTCGATCTCGATGCGCTTCTCGACATGTCCATCGAAGATCTTGTCAAACATTTCAGTTCCCGTATTCGCAGAAGGTTTTCTAGAGGATTGACCAGAAAACCTATGGCTTTGATTAAGAAATTGCGCAAAGCGAAAATGGAGGCACCAGCTGGTGAGAAGCCAGCATCAGTGAGAACACACTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCATCATTGGTGTGTACAACGGAAAGACTTTTAACCAAGTCGAGATCAAGCCGGAGATGATTGGACATTACTTGGCTGAGTTCTCAATCTCATACAAACCGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTACCAATTCCTCCAGGTTTATCCCTCTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

149

Amino Acids

16.81

Weight (kDa)

10.52

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19	PF00203	47 - 132	4.2e-33	Ribosomal protein S19

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04270 AT1G04270 AT1G33850 AT5G09490 AT5G09500 AT5G09510 AT5G09510 AT5G43640
fragaria_vesca	FvH4_1g16020 FvH4_2g04890 FvH4_4g02630 FvH4_6g02650
malus_domestica	MD00G1187800.v1.1 MD04G1226500.v1.1 MD12G1243500.v1.1 MD13G1207000.v1.1 MD16G1208600.v1.1
prunus_persica	Prupe.1G030600_v2.0.a1 Prupe.6G345200_v2.0.a1
pyrus_communis	pycom04g19970 pycom12g22260 pycom13g17930
rosa_chinensis	RchiOBHm_Chr3g0450581 RchiOBHm_Chr4g0390491
rosa_laevigata	RLG00000009921 RLG00000025719
rosa_multiflora	Rmu_sc0000078.1_g000043 Rmu_sc0005951.1_g000014 Rmu_sc0013467.1_g000008 Rmu_sc0030937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336490 Rroxscaffold_6G00428280
rosa_rugosa	Rorug02G0628800 Rorug03G0330900
rosa_samantha	Rh3AG029600 Rh3BG030000 Rh3CG028900 Rh3DG029700 Rh4AG032200 Rh4CG035700 Rh4DG028600
rosa_wichuraiana	Rw3G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	211
AciI	CCGC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	410
AflIII	ACRYGT	1 cut(s)	93
AgeI	ACCGGT	1 cut(s)	385
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	2 cut(s)	403, 428
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
AoxI	GGCC	1 cut(s)	401
ArsI	GACNNNNNNTTYG	2 cut(s)	96, 128
AsiGI	ACCGGT	1 cut(s)	385
Asp700I	GAANNNNTTC	1 cut(s)	145
AspLEI	GCGC	2 cut(s)	85, 195
AsuHPI	GGTGA	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	211
BccI	CCATC	1 cut(s)	107
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	2 cut(s)	405, 430
BclI	TGATCA	1 cut(s)	261
BfaI	CTAG	1 cut(s)	150
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	2 cut(s)	405, 430
BmiI	GGNNCC	2 cut(s)	6, 213
BmrFI	CCNGG	2 cut(s)	405, 430
BmsI	GCATC	3 cut(s)	70, 242, 297
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
BpmI	CTGGAG	1 cut(s)	412
BpuEI	CTTGAG	2 cut(s)	271, 428
BsaWI	WCCGGW	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse118I	RCCGGY	1 cut(s)	385
BseBI	CCWGG	2 cut(s)	405, 430
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	403
BshNI	GGYRCC	1 cut(s)	211
BshTI	ACCGGT	1 cut(s)	385
BsiSI	CCGG	2 cut(s)	338, 386
BslI	CCNNNNNNNGG	1 cut(s)	410
BsnI	GGCC	1 cut(s)	403
Bsp1407I	TGTACA	1 cut(s)	300
Bsp143I	GATC	4 cut(s)	73, 106, 261, 330
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	403
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	6, 213
BspT107I	GGYRCC	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	385
BsrGI	TGTACA	1 cut(s)	300
BssAI	RCCGGY	1 cut(s)	385
BssMI	GATC	4 cut(s)	73, 106, 261, 330
Bst2UI	CCWGG	2 cut(s)	405, 430
Bst4CI	ACNGT	1 cut(s)	398
BstAUI	TGTACA	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	363
BstHHI	GCGC	2 cut(s)	85, 195
BstKTI	GATC	4 cut(s)	76, 109, 264, 333
BstMBI	GATC	4 cut(s)	73, 106, 261, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstNI	CCWGG	2 cut(s)	405, 430
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	2 cut(s)	403, 428
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	231
CfoI	GCGC	2 cut(s)	85, 195
Cfr10I	RCCGGY	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	301
CspAI	ACCGGT	1 cut(s)	385
CviAII	CATG	2 cut(s)	94, 259
CviJI	RGCY	7 cut(s)	23, 176, 218, 229, 337, 362, 403
CviKI_1	RGCY	7 cut(s)	23, 176, 218, 229, 337, 362, 403
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	4 cut(s)	75, 108, 263, 332
DpnII	GATC	4 cut(s)	73, 106, 261, 330
Eco147I	AGGCCT	1 cut(s)	403
EcoRII	CCWGG	2 cut(s)	403, 428
FaeI	CATG	2 cut(s)	97, 262
FaiI	YATR	4 cut(s)	95, 173, 260, 379
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FatI	CATG	2 cut(s)	93, 258
FbaI	TGATCA	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	1 cut(s)	150
FspI	TGCGCA	1 cut(s)	194
GlaI	GCGC	2 cut(s)	84, 194
GluI	GCNGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	403
HapII	CCGG	2 cut(s)	338, 386
HhaI	GCGC	2 cut(s)	85, 195
Hin1II	CATG	2 cut(s)	97, 262
Hin6I	GCGC	2 cut(s)	83, 193
HinP1I	GCGC	2 cut(s)	83, 193
HinfI	GANTC	1 cut(s)	69
HpaII	CCGG	2 cut(s)	338, 386
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	1 cut(s)	65
Hpy188III	TCNNGA	4 cut(s)	77, 89, 150, 328
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	2 cut(s)	55, 135
HpyCH4III	ACNGT	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpyF3I	CTNAG	1 cut(s)	363
Hsp92II	CATG	2 cut(s)	97, 262
HspAI	GCGC	2 cut(s)	83, 193
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	4 cut(s)	73, 106, 261, 330
LweI	GCATC	3 cut(s)	70, 242, 297
MaeI	CTAG	1 cut(s)	150
MalI	GATC	4 cut(s)	75, 108, 263, 332
MboI	GATC	4 cut(s)	73, 106, 261, 330
MboII	GAAGA	1 cut(s)	116
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	3 cut(s)	27, 188, 421
MlyI	GAGTC	1 cut(s)	78
MnlI	CCTC	7 cut(s)	4, 59, 146, 202, 246, 436, 450
MroXI	GAANNNNTTC	1 cut(s)	145
MseI	TTAA	2 cut(s)	183, 318
MslI	CAYNNNNRTG	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	2 cut(s)	338, 386
MspR9I	CCNGG	2 cut(s)	405, 430
MvaI	CCWGG	2 cut(s)	405, 430
MwoI	GCNNNNNNNGC	1 cut(s)	400
NdeII	GATC	4 cut(s)	73, 106, 261, 330
NlaIII	CATG	2 cut(s)	97, 262
NlaIV	GGNNCC	2 cut(s)	6, 213
NsbI	TGCGCA	1 cut(s)	194
NspI	RCATGY	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	403
PciI	ACATGT	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	145
PinAI	ACCGGT	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PscI	ACATGT	1 cut(s)	93
Psp6I	CCWGG	2 cut(s)	403, 428
PspGI	CCWGG	2 cut(s)	403, 428
PspN4I	GGNNCC	2 cut(s)	6, 213
PsuI	RGATCY	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	183, 318
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	4 cut(s)	73, 106, 261, 330
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	2 cut(s)	405, 430
SetI	ASST	6 cut(s)	15, 47, 146, 172, 220, 434
SfaNI	GCATC	3 cut(s)	70, 242, 297
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	2 cut(s)	250, 443
SmoI	CTYRAG	2 cut(s)	250, 443
Sse9I	AATT	3 cut(s)	27, 188, 421
SseBI	AGGCCT	1 cut(s)	403
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	403
StyD4I	CCNGG	2 cut(s)	403, 428
TaaI	ACNGT	1 cut(s)	398
TaqI	TCGA	5 cut(s)	72, 78, 90, 102, 327
TasI	AATT	3 cut(s)	27, 188, 421
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	1 cut(s)	23
Tru1I	TTAA	2 cut(s)	183, 318
Tru9I	TTAA	2 cut(s)	183, 318
TscAI	CASTG	1 cut(s)	243
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	243
XbaI	TCTAGA	1 cut(s)	149
XceI	RCATGY	1 cut(s)	97
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	145
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.