Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002331

Physical Location & Seq

Genomic Coordinates Reverse (-)

21566746 .. 21567896

Gene Structure 1151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCGGATGTGGAGGCTGATGTTGCTGCGGCAGGAGTCCCGAAGAAGAGGACGTTTAAGAAGTTCAGCTTCAGAGGCGTAGATTTGGATGCGCTTCTCGATATGTCAACTGATGAGCTTGTCAAGCTCTTCCCTGCCAGGGCTCGCAGAAGGTTCCAGAGAGGTTTGAAGAGAAAGCCAATGGCTTTGATCAAGAAGCTTCGCAAAGCTAAAAGGGAGGCTCCACCTGGTGAGAAACCGGAGCCAGTTAGAACTCACCTTAGGAACATGATCGATCGTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

95

Amino Acids

10.79

Weight (kDa)

10.98

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04270 AT1G04270 AT1G33850 AT5G09490 AT5G09500 AT5G09510 AT5G09510 AT5G43640
fragaria_vesca	FvH4_1g16020 FvH4_2g04890 FvH4_4g02630 FvH4_6g02650
malus_domestica	MD00G1187800.v1.1 MD04G1226500.v1.1 MD12G1243500.v1.1 MD13G1207000.v1.1 MD16G1208600.v1.1
prunus_persica	Prupe.1G030600_v2.0.a1 Prupe.6G345200_v2.0.a1
pyrus_communis	pycom04g19970 pycom12g22260 pycom13g17930
rosa_chinensis	RchiOBHm_Chr3g0450581 RchiOBHm_Chr4g0390491
rosa_laevigata	RLG00000009921 RLG00000025719
rosa_multiflora	Rmu_sc0000078.1_g000043 Rmu_sc0005951.1_g000014 Rmu_sc0013467.1_g000008 Rmu_sc0030937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336490 Rroxscaffold_6G00428280
rosa_rugosa	Rorug02G0628800 Rorug03G0330900
rosa_samantha	Rh3AG029600 Rh3BG030000 Rh3CG028900 Rh3DG029700 Rh4AG032200 Rh4CG035700 Rh4DG028600
rosa_wichuraiana	Rw3G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 29
AcuI	CTGAAG	1 cut(s)	55
AdeI	CACNNNGTG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	1 cut(s)	169
AjnI	CCWGG	2 cut(s)	137, 226
AluBI	AGCT	5 cut(s)	69, 118, 127, 199, 209
AluI	AGCT	5 cut(s)	69, 118, 127, 199, 209
ApeKI	GCWGC	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	242, 248
AxyI	CCTNAGG	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	13
BciT130I	CCWGG	2 cut(s)	139, 228
BclI	TGATCA	1 cut(s)	189
BisI	GCNGC	2 cut(s)	27, 30
BlsI	GCNGC	2 cut(s)	28, 31
Bme1390I	CCNGG	2 cut(s)	139, 228
BmiI	GGNNCC	3 cut(s)	155, 222, 243
BmrFI	CCNGG	2 cut(s)	139, 228
BmsI	GCATC	1 cut(s)	79
Bsa29I	ATCGAT	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	245
Bse21I	CCTNAGG	1 cut(s)	260
BseBI	CCWGG	2 cut(s)	139, 228
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	13, 94
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseNI	ACTGG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	13
Bsh1285I	CGRYCG	1 cut(s)	277
BshVI	ATCGAT	1 cut(s)	273
BsiEI	CGRYCG	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	3 cut(s)	189, 270, 274
BspACI	CCGC	2 cut(s)	5, 29
BspDI	ATCGAT	1 cut(s)	273
BspLI	GGNNCC	3 cut(s)	155, 222, 243
BspQI	GCTCTTC	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	3 cut(s)	189, 270, 274
Bst2UI	CCWGG	2 cut(s)	139, 228
Bst6I	CTCTTC	3 cut(s)	41, 134, 164
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	13, 94
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	3 cut(s)	192, 273, 277
BstMBI	GATC	3 cut(s)	189, 270, 274
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 75, 124
BstNI	CCWGG	2 cut(s)	139, 228
BstSCI	CCNGG	2 cut(s)	137, 226
BstV1I	GCAGC	1 cut(s)	13
Bsu15I	ATCGAT	1 cut(s)	273
Bsu36I	CCTNAGG	1 cut(s)	260
BsuTUI	ATCGAT	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	13, 94
Cac8I	GCNNGC	1 cut(s)	145
CfoI	GCGC	1 cut(s)	94
ClaI	ATCGAT	1 cut(s)	273
CsiI	ACCWGGT	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	1 cut(s)	268
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	3 cut(s)	191, 272, 276
DpnII	GATC	3 cut(s)	189, 270, 274
DraIII	CACNNNGTG	1 cut(s)	230
Eam1104I	CTCTTC	3 cut(s)	41, 134, 164
EarI	CTCTTC	3 cut(s)	41, 134, 164
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	55
Eco81I	CCTNAGG	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	137, 226
EcoT38I	GRGCYC	1 cut(s)	145
FaeI	CATG	1 cut(s)	271
FaiI	YATR	2 cut(s)	104, 269
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	1 cut(s)	267
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	27, 30
FokI	GGATG	2 cut(s)	20, 101
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	2 cut(s)	27, 30
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	2 cut(s)	27, 30
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	1 cut(s)	36
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	2 cut(s)	242, 248
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	4 cut(s)	40, 98, 157, 193
Hpy8I	GTNNAC	1 cut(s)	108
HpyAV	CCTTC	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 75, 124
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	271
HspAI	GCGC	1 cut(s)	92
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	189, 270, 274
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	2 cut(s)	226, 241
LpnPI	CCDG	9 cut(s)	18, 124, 147, 151, 170, 213, 240, 252, 258
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	1 cut(s)	79
MabI	ACCWGGT	1 cut(s)	226
MaeII	ACGT	1 cut(s)	53
MalI	GATC	3 cut(s)	191, 272, 276
MboI	GATC	3 cut(s)	189, 270, 274
MboII	GAAGA	4 cut(s)	55, 58, 121, 181
MhlI	GDGCHC	1 cut(s)	145
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	5 cut(s)	7, 42, 68, 155, 211
MseI	TTAA	1 cut(s)	57
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	139, 228
MvaI	CCWGG	2 cut(s)	139, 228
MwoI	GCNNNNNNNGC	3 cut(s)	23, 75, 124
NdeII	GATC	3 cut(s)	189, 270, 274
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	3 cut(s)	155, 222, 243
PciSI	GCTCTTC	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	28, 31
Ple19I	CGATCG	1 cut(s)	277
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	137, 226
PspGI	CCWGG	2 cut(s)	137, 226
PspN4I	GGNNCC	3 cut(s)	155, 222, 243
PvuI	CGATCG	1 cut(s)	277
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	2 cut(s)	27, 30
Sau3AI	GATC	3 cut(s)	189, 270, 274
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	2 cut(s)	139, 228
SduI	GDGCHC	1 cut(s)	145
SexAI	ACCWGGT	1 cut(s)	226
SfaNI	GCATC	1 cut(s)	79
SsiI	CCGC	2 cut(s)	5, 29
StyD4I	CCNGG	2 cut(s)	137, 226
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	2 cut(s)	99, 273
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TseI	GCWGC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.