Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002331

Physical Location & Seq

Genomic Coordinates Reverse (-)

2953884 .. 2954918

Gene Structure 1035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCGGATCCAGAGGTTGCTGCGGCTGGAATCGTAAAAAAGAGAACGTTCAAAAAGTTTTCCTTCAGAGGAGTCGATCTTGATGCTCTTCTCGACATGTCTACTGATGATCTTGTCAAGCTTTTCCCTTCCCGTATCCGTAGAAGGTTCTCTAGAGGATTGACGAGGAAGCCTATGGCTTTGATCAAGAAACTGCGGAAAGCGAAAATTGAAGCACCAGCTGGAGAGAAGCCAGCAGCAGTGAGAACCCACCTAAGGAACATGATCATTGTGCCTGAAATGATTGGAAGCGTCATCGGTGTTTACAATGGAAAGACTTTTAACCAGGTCGAGATCAAACCAGAGATGATTGGACATTACTTGGCTGAGTTTTCAATCTCATATAAGCCTGTTAAGCATGGTAGGCCTGGTGTTGGTGCTACCAATTCCTCCAGATTTATCCCTCTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

150

Amino Acids

16.75

Weight (kDa)

10.52

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19	PF00203	48 - 133	2.9e-33	Ribosomal protein S19

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04270 AT1G04270 AT1G33850 AT5G09490 AT5G09500 AT5G09510 AT5G09510 AT5G43640
fragaria_vesca	FvH4_1g16020 FvH4_2g04890 FvH4_4g02630 FvH4_6g02650
malus_domestica	MD00G1187800.v1.1 MD04G1226500.v1.1 MD12G1243500.v1.1 MD13G1207000.v1.1 MD16G1208600.v1.1
prunus_persica	Prupe.1G030600_v2.0.a1 Prupe.6G345200_v2.0.a1
pyrus_communis	pycom04g19970 pycom12g22260 pycom13g17930
rosa_chinensis	RchiOBHm_Chr3g0450581 RchiOBHm_Chr4g0390491
rosa_laevigata	RLG00000009921 RLG00000025719
rosa_multiflora	Rmu_sc0000078.1_g000043 Rmu_sc0005951.1_g000014 Rmu_sc0013467.1_g000008 Rmu_sc0030937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336490 Rroxscaffold_6G00428280
rosa_rugosa	Rorug02G0628800 Rorug03G0330900
rosa_samantha	Rh3AG029600 Rh3BG030000 Rh3CG028900 Rh3DG029700 Rh4AG032200 Rh4CG035700 Rh4DG028600
rosa_wichuraiana	Rw3G002280

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	101
AciI	CCGC	3 cut(s)	5, 23, 196
AclI	AACGTT	1 cut(s)	47
AclWI	GGATC	2 cut(s)	2, 15
AcuI	CTGAAG	1 cut(s)	49
AfiI	CCNNNNNNNGG	2 cut(s)	255, 413
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	3 cut(s)	52, 212, 375
AjnI	CCWGG	2 cut(s)	324, 406
AluBI	AGCT	2 cut(s)	121, 221
AluI	AGCT	2 cut(s)	121, 221
AlwI	GGATC	2 cut(s)	2, 15
AoxI	GGCC	1 cut(s)	404
ApeKI	GCWGC	2 cut(s)	20, 236
AxyI	CCTNAGG	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	7
BbvI	GCAGC	2 cut(s)	7, 248
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	2 cut(s)	326, 408
BciVI	GTATCC	1 cut(s)	146
BclI	TGATCA	2 cut(s)	183, 264
BfaI	CTAG	1 cut(s)	153
BfuI	GTATCC	1 cut(s)	146
BisI	GCNGC	3 cut(s)	21, 24, 237
BlsI	GCNGC	3 cut(s)	22, 25, 238
Bme1390I	CCNGG	2 cut(s)	326, 408
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	2 cut(s)	326, 408
BmsI	GCATC	1 cut(s)	73
BpmI	CTGGAG	2 cut(s)	243, 415
BpuEI	CTTGAG	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 413
Bse21I	CCTNAGG	1 cut(s)	254
BseBI	CCWGG	2 cut(s)	326, 408
BseLI	CCNNNNNNNGG	2 cut(s)	255, 413
BseMII	CTCAG	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	2 cut(s)	7, 248
BshFI	GGCC	1 cut(s)	406
BslI	CCNNNNNNNGG	2 cut(s)	255, 413
BsnI	GGCC	1 cut(s)	406
Bsp143I	GATC	6 cut(s)	7, 76, 109, 183, 264, 333
BspACI	CCGC	3 cut(s)	5, 23, 196
BspANI	GGCC	1 cut(s)	406
BspCNI	CTCAG	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	2 cut(s)	2, 15
BspQI	GCTCTTC	1 cut(s)	93
BssMI	GATC	6 cut(s)	7, 76, 109, 183, 264, 333
Bst2UI	CCWGG	2 cut(s)	326, 408
Bst6I	CTCTTC	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	254, 366
BstKTI	GATC	6 cut(s)	10, 79, 112, 186, 267, 336
BstMBI	GATC	6 cut(s)	7, 76, 109, 183, 264, 333
BstMWI	GCNNNNNNNGC	2 cut(s)	394, 403
BstNI	CCWGG	2 cut(s)	326, 408
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	2 cut(s)	324, 406
BstV1I	GCAGC	2 cut(s)	7, 248
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
Bsu36I	CCTNAGG	1 cut(s)	254
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	406
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	234
CseI	GACGC	1 cut(s)	280
CsiI	ACCWGGT	1 cut(s)	324
CviAII	CATG	3 cut(s)	97, 262, 398
CviJI	RGCY	9 cut(s)	26, 121, 172, 179, 221, 232, 365, 388, 406
CviKI_1	RGCY	9 cut(s)	26, 121, 172, 179, 221, 232, 365, 388, 406
DdeI	CTNAG	2 cut(s)	254, 366
DpnI	GATC	6 cut(s)	9, 78, 111, 185, 266, 335
DpnII	GATC	6 cut(s)	7, 76, 109, 183, 264, 333
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	49
Eco81I	CCTNAGG	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	324, 406
FaeI	CATG	3 cut(s)	100, 265, 401
FaiI	YATR	6 cut(s)	98, 176, 263, 382, 384, 399
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
FatI	CATG	3 cut(s)	96, 261, 397
FbaI	TGATCA	2 cut(s)	183, 264
FblI	GTMKAC	1 cut(s)	101
Fnu4HI	GCNGC	3 cut(s)	21, 24, 237
Fsp4HI	GCNGC	3 cut(s)	21, 24, 237
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	3 cut(s)	21, 24, 237
GsuI	CTGGAG	2 cut(s)	243, 415
HaeIII	GGCC	1 cut(s)	406
HgaI	GACGC	1 cut(s)	280
Hin1II	CATG	3 cut(s)	100, 265, 401
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	2 cut(s)	30, 72
Hpy166II	GTNNAC	2 cut(s)	102, 304
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	7 cut(s)	11, 80, 92, 153, 187, 331, 432
Hpy8I	GTNNAC	2 cut(s)	102, 304
HpyAV	CCTTC	3 cut(s)	73, 138, 138
HpyCH4IV	ACGT	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	2 cut(s)	394, 403
HpyF3I	CTNAG	2 cut(s)	254, 366
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	3 cut(s)	100, 265, 401
Ksp22I	TGATCA	2 cut(s)	183, 264
Kzo9I	GATC	6 cut(s)	7, 76, 109, 183, 264, 333
LguI	GCTCTTC	1 cut(s)	93
Lsp1109I	GCAGC	2 cut(s)	7, 248
LweI	GCATC	1 cut(s)	73
MabI	ACCWGGT	1 cut(s)	324
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	47
MalI	GATC	6 cut(s)	9, 78, 111, 185, 266, 335
MboI	GATC	6 cut(s)	7, 76, 109, 183, 264, 333
MboII	GAAGA	1 cut(s)	80
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	2 cut(s)	207, 424
MlyI	GAGTC	1 cut(s)	81
MnlI	CCTC	6 cut(s)	7, 62, 149, 159, 439, 453
MseI	TTAA	2 cut(s)	321, 393
MspA1I	CMGCKG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	326, 408
MvaI	CCWGG	2 cut(s)	326, 408
MwoI	GCNNNNNNNGC	2 cut(s)	394, 403
NdeII	GATC	6 cut(s)	7, 76, 109, 183, 264, 333
NlaIII	CATG	3 cut(s)	100, 265, 401
NlaIV	GGNNCC	1 cut(s)	9
NspI	RCATGY	1 cut(s)	100
PceI	AGGCCT	1 cut(s)	406
PciI	ACATGT	1 cut(s)	96
PciSI	GCTCTTC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	30
PkrI	GCNGC	3 cut(s)	22, 25, 238
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PscI	ACATGT	1 cut(s)	96
Psp1406I	AACGTT	1 cut(s)	47
Psp6I	CCWGG	2 cut(s)	324, 406
PspGI	CCWGG	2 cut(s)	324, 406
PspN4I	GGNNCC	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	321, 393
SatI	GCNGC	3 cut(s)	21, 24, 237
Sau3AI	GATC	6 cut(s)	7, 76, 109, 183, 264, 333
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	2 cut(s)	326, 408
SetI	ASST	7 cut(s)	18, 50, 123, 149, 223, 255, 330
SexAI	ACCWGGT	1 cut(s)	324
SfaNI	GCATC	1 cut(s)	73
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	2 cut(s)	207, 424
SseBI	AGGCCT	1 cut(s)	406
SsiI	CCGC	3 cut(s)	5, 23, 196
SspMI	CTAG	1 cut(s)	153
StuI	AGGCCT	1 cut(s)	406
StyD4I	CCNGG	2 cut(s)	324, 406
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	3 cut(s)	75, 93, 330
TasI	AATT	2 cut(s)	207, 424
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	30
Tru1I	TTAA	2 cut(s)	321, 393
Tru9I	TTAA	2 cut(s)	321, 393
TscAI	CASTG	1 cut(s)	246
TseI	GCWGC	2 cut(s)	20, 236
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	246
XbaI	TCTAGA	1 cut(s)	152
XceI	RCATGY	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	101
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.