Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002331

Physical Location & Seq

Genomic Coordinates Reverse (-)

2172754 .. 2175087

Gene Structure 2334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G030600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCGGACGTTGAGACCGATGTGGCGGCAGCTGGAGTTCCCAAGAAGAGGACGTTCAAGAAGTTCAGCTTCAGAGGTGTCGATTTGGATGCTCTTCTCGACATGTCGACTGATGAGCTTGTCAAGCTCTTCCCTGCCAGAGCTCGCAGAAGGTTTCAGAGGGGCCTCAAGCGCAAGCCCATGGCTTTGATCAAGAAGCTGCGCAAAGCGAAAAGAGAGGCTCCACCCGGTGAAAAGCCAGAACCAGTCCGCACTCATCTGCGTAACATGATTATAGTGCCAGAAATGATTGGAAGCATTATTGGTGTGTACAATGGTAAGACCTTCAATCAGGTTGAAATCAAGCCTGAAATGATCAGCCACTACCTTGCTGAGTTCTCAATCTCATACAAGCCTGTCAAGCACGGTAGGCCTGGTATTGGTGCCACCCACTCTTCGAGGTTCATTCCTCTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

153

Amino Acids

17.21

Weight (kDa)

10.44

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04270 AT1G04270 AT1G33850 AT5G09490 AT5G09500 AT5G09510 AT5G09510 AT5G43640
fragaria_vesca	FvH4_1g16020 FvH4_2g04890 FvH4_4g02630 FvH4_6g02650
malus_domestica	MD00G1187800.v1.1 MD04G1226500.v1.1 MD12G1243500.v1.1 MD13G1207000.v1.1 MD16G1208600.v1.1
prunus_persica	Prupe.1G030600_v2.0.a1 Prupe.6G345200_v2.0.a1
pyrus_communis	pycom04g19970 pycom12g22260 pycom13g17930
rosa_chinensis	RchiOBHm_Chr3g0450581 RchiOBHm_Chr4g0390491
rosa_laevigata	RLG00000009921 RLG00000025719
rosa_multiflora	Rmu_sc0000078.1_g000043 Rmu_sc0005951.1_g000014 Rmu_sc0013467.1_g000008 Rmu_sc0030937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336490 Rroxscaffold_6G00428280
rosa_rugosa	Rorug02G0628800 Rorug03G0330900
rosa_samantha	Rh3AG029600 Rh3BG030000 Rh3CG028900 Rh3DG029700 Rh4AG032200 Rh4CG035700 Rh4DG028600
rosa_wichuraiana	Rw3G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	107
AciI	CCGC	3 cut(s)	5, 26, 250
AcuI	CTGAAG	1 cut(s)	55
AdeI	CACNNNGTG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	48, 419
AflII	CTTAAG	1 cut(s)	452
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	3 cut(s)	58, 328, 338
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	6 cut(s)	32, 69, 118, 127, 143, 199
AluI	AGCT	6 cut(s)	32, 69, 118, 127, 143, 199
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	8
AoxI	GGCC	2 cut(s)	163, 410
ApeKI	GCWGC	2 cut(s)	29, 199
AspLEI	GCGC	2 cut(s)	174, 204
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	2 cut(s)	41, 186
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	1 cut(s)	414
BclI	TGATCA	2 cut(s)	189, 354
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	452
BisI	GCNGC	3 cut(s)	27, 30, 200
BlsI	GCNGC	3 cut(s)	28, 31, 201
Bme1390I	CCNGG	2 cut(s)	228, 414
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	3 cut(s)	164, 222, 424
BmrFI	CCNGG	2 cut(s)	228, 414
BmsI	GCATC	1 cut(s)	79
BpmI	CTGGAG	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 419
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	2 cut(s)	48, 419
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	41, 186
BshFI	GGCC	2 cut(s)	165, 412
BshNI	GGYRCC	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	2 cut(s)	48, 419
BsmAI	GTCTC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	165, 412
Bso31I	GGTCTC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	189, 354
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	3 cut(s)	5, 26, 250
BspANI	GGCC	2 cut(s)	165, 412
BspCNI	CTCAG	1 cut(s)	364
BspLI	GGNNCC	3 cut(s)	164, 222, 424
BspQI	GCTCTTC	2 cut(s)	99, 134
BspT107I	GGYRCC	1 cut(s)	422
BspTI	CTTAAG	1 cut(s)	452
BspTNI	GGTCTC	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	2 cut(s)	189, 354
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	4 cut(s)	41, 99, 134, 439
BstAFI	CTTAAG	1 cut(s)	452
BstAUI	TGTACA	1 cut(s)	309
BstC8I	GCNNGC	2 cut(s)	145, 176
BstDEI	CTNAG	1 cut(s)	372
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	174, 204
BstKTI	GATC	2 cut(s)	192, 357
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	2 cut(s)	189, 354
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 171, 400, 409
BstNI	CCWGG	1 cut(s)	414
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	226, 412
BstV1I	GCAGC	2 cut(s)	41, 186
BsuRI	GGCC	2 cut(s)	165, 412
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	145, 176
CfoI	GCGC	2 cut(s)	174, 204
Cfr13I	GGNCC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	3 cut(s)	103, 181, 268
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	2 cut(s)	191, 356
DpnII	GATC	2 cut(s)	189, 354
DraIII	CACNNNGTG	1 cut(s)	230
Eam1104I	CTCTTC	4 cut(s)	41, 99, 134, 439
EarI	CTCTTC	4 cut(s)	41, 99, 134, 439
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	180
Eco147I	AGGCCT	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	145
Eco31I	GGTCTC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	3 cut(s)	106, 184, 271
FaiI	YATR	5 cut(s)	104, 182, 269, 275, 388
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	3 cut(s)	102, 180, 267
FbaI	TGATCA	2 cut(s)	189, 354
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	3 cut(s)	27, 30, 200
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	3 cut(s)	27, 30, 200
FspI	TGCGCA	1 cut(s)	203
GlaI	GCGC	2 cut(s)	173, 203
GluI	GCNGC	3 cut(s)	27, 30, 200
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	165, 412
HapII	CCGG	1 cut(s)	228
HhaI	GCGC	2 cut(s)	174, 204
Hin1II	CATG	3 cut(s)	106, 184, 271
Hin6I	GCGC	2 cut(s)	172, 202
HinP1I	GCGC	2 cut(s)	172, 202
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	108, 310
Hpy188I	TCNGA	2 cut(s)	74, 159
Hpy188III	TCNNGA	3 cut(s)	58, 98, 193
Hpy8I	GTNNAC	2 cut(s)	108, 310
HpyAV	CCTTC	2 cut(s)	144, 334
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	2 cut(s)	9, 53
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 171, 400, 409
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	2 cut(s)	9, 53
Hsp92II	CATG	3 cut(s)	106, 184, 271
HspAI	GCGC	2 cut(s)	172, 202
Ksp22I	TGATCA	2 cut(s)	189, 354
Kzo9I	GATC	2 cut(s)	189, 354
LguI	GCTCTTC	2 cut(s)	99, 134
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	2 cut(s)	41, 186
LweI	GCATC	1 cut(s)	79
MaeII	ACGT	2 cut(s)	9, 53
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	2 cut(s)	191, 356
MboI	GATC	2 cut(s)	189, 354
MboII	GAAGA	4 cut(s)	58, 86, 121, 426
MhlI	GDGCHC	1 cut(s)	145
MnlI	CCTC	7 cut(s)	42, 68, 153, 176, 211, 432, 459
MseI	TTAA	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	32
MspCI	CTTAAG	1 cut(s)	452
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	228, 414
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	4 cut(s)	124, 171, 400, 409
NciI	CCSGG	1 cut(s)	228
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	2 cut(s)	189, 354
NlaIII	CATG	3 cut(s)	106, 184, 271
NlaIV	GGNNCC	3 cut(s)	164, 222, 424
NsbI	TGCGCA	1 cut(s)	203
NspI	RCATGY	1 cut(s)	106
PceI	AGGCCT	1 cut(s)	412
PciI	ACATGT	1 cut(s)	102
PciSI	GCTCTTC	2 cut(s)	99, 134
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	28, 31, 201
PscI	ACATGT	1 cut(s)	102
Psp124BI	GAGCTC	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	3 cut(s)	164, 222, 424
PspPI	GGNCC	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SacI	GAGCTC	1 cut(s)	145
SalI	GTCGAC	1 cut(s)	106
SapI	GCTCTTC	2 cut(s)	99, 134
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	3 cut(s)	27, 30, 200
Sau3AI	GATC	2 cut(s)	189, 354
Sau96I	GGNCC	1 cut(s)	163
ScrFI	CCNGG	2 cut(s)	228, 414
SduI	GDGCHC	1 cut(s)	145
SfaNI	GCATC	1 cut(s)	79
SmlI	CTYRAG	2 cut(s)	167, 452
SmoI	CTYRAG	2 cut(s)	167, 452
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	3 cut(s)	5, 26, 250
SstI	GAGCTC	1 cut(s)	145
StuI	AGGCCT	1 cut(s)	412
StyD4I	CCNGG	2 cut(s)	226, 412
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	2 cut(s)	12, 56
TaqI	TCGA	4 cut(s)	81, 99, 107, 437
TaqII	GACCGA	1 cut(s)	32
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TseI	GCWGC	2 cut(s)	29, 199
TspDTI	ATGAA	1 cut(s)	433
Vha464I	CTTAAG	1 cut(s)	452
XceI	RCATGY	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.