Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002331

Physical Location & Seq

Genomic Coordinates Reverse (-)

44548757 .. 44548927

Gene Structure 171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1187800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGGCGGATGTGGAGGCTGATGTTGTGGCGGCAAGAATACCGAAGAAGATGACGTTCAAGAAGTTCAGCTTTAGAGGCGTCAATTTGGATGCGCTTCTCGACATGTCGACTGATGAGCTTGTTAAGCTCTTTCCTGCTATAGGGCTCGCAGAAGGTTCCAGAGAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

57

Amino Acids

6.14

Weight (kDa)

5.17

Isoelectric Point (pI)

27.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04270 AT1G04270 AT1G33850 AT5G09490 AT5G09500 AT5G09510 AT5G09510 AT5G43640
fragaria_vesca	FvH4_1g16020 FvH4_2g04890 FvH4_4g02630 FvH4_6g02650
malus_domestica	MD00G1187800.v1.1 MD04G1226500.v1.1 MD12G1243500.v1.1 MD13G1207000.v1.1 MD16G1208600.v1.1
prunus_persica	Prupe.1G030600_v2.0.a1 Prupe.6G345200_v2.0.a1
pyrus_communis	pycom04g19970 pycom12g22260 pycom13g17930
rosa_chinensis	RchiOBHm_Chr3g0450581 RchiOBHm_Chr4g0390491
rosa_laevigata	RLG00000009921 RLG00000025719
rosa_multiflora	Rmu_sc0000078.1_g000043 Rmu_sc0005951.1_g000014 Rmu_sc0013467.1_g000008 Rmu_sc0030937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336490 Rroxscaffold_6G00428280
rosa_rugosa	Rorug02G0628800 Rorug03G0330900
rosa_samantha	Rh3AG029600 Rh3BG030000 Rh3CG028900 Rh3DG029700 Rh4AG032200 Rh4CG035700 Rh4DG028600
rosa_wichuraiana	Rw3G002280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	107
AciI	CCGC	2 cut(s)	5, 29
AcyI	GRCGYC	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	140
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	58
AluBI	AGCT	3 cut(s)	69, 118, 127
AluI	AGCT	3 cut(s)	69, 118, 127
AspLEI	GCGC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	157
BmsI	GCATC	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
BseGI	GGATG	2 cut(s)	13, 94
BseLI	CCNNNNNNNGG	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	147
BspACI	CCGC	2 cut(s)	5, 29
BspLI	GGNNCC	1 cut(s)	157
BssNI	GRCGYC	1 cut(s)	78
BstACI	GRCGYC	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	147
BstENI	CCTNNNNNAGG	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	13, 94
BstHHI	GCGC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 124
BstNSI	RCATGY	1 cut(s)	106
BstSFI	CTRYAG	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	13, 94
Cac8I	GCNNGC	1 cut(s)	147
CfoI	GCGC	1 cut(s)	94
CseI	GACGC	1 cut(s)	67
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	5 cut(s)	17, 69, 118, 127, 145
CviKI_1	RGCY	5 cut(s)	17, 69, 118, 127, 145
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	147
EcoNI	CCTNNNNNAGG	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	147
FaeI	CATG	1 cut(s)	106
FaiI	YATR	2 cut(s)	104, 140
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	1 cut(s)	102
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	2 cut(s)	20, 101
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	30
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	30
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188III	TCNNGA	3 cut(s)	58, 98, 159
Hpy8I	GTNNAC	1 cut(s)	108
HpyAV	CCTTC	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 124
HpySE526I	ACGT	1 cut(s)	53
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	1 cut(s)	92
LpnPI	CCDG	1 cut(s)	147
LweI	GCATC	1 cut(s)	79
MaeII	ACGT	1 cut(s)	53
MboII	GAAGA	2 cut(s)	55, 58
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	1 cut(s)	82
MnlI	CCTC	3 cut(s)	7, 68, 157
MseI	TTAA	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	75, 124
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	106
PciI	ACATGT	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	31
PscI	ACATGT	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	157
SalI	GTCGAC	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	6 cut(s)	56, 71, 120, 129, 157, 168
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	1 cut(s)	138
SgeI	CNNG	7 cut(s)	45, 70, 110, 115, 131, 146, 158
Sse9I	AATT	1 cut(s)	82
SsiI	CCGC	2 cut(s)	5, 29
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	2 cut(s)	99, 107
TasI	AATT	1 cut(s)	82
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
XagI	CCTNNNNNAGG	1 cut(s)	138
XceI	RCATGY	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.