Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002331

Physical Location & Seq

Genomic Coordinates Reverse (-)

18881970 .. 18883722

Gene Structure 1753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1207000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCTGACGTTGAGACCGATGTTGCGGCAGCTGGAGTTCCGAAGAAGAGAACATTCAAGAAGTTCAGCTTCAGGGGCGTCGATTTGGATGCCCTTCTTGACATGTCTACTGATGAGCTCGTCAAGCTCTTCCCTGCCAGAGCTCGCAGAAGGTTTCAGAGAGGTCTGAAGCGCAAGCCTATGGCTTTGATTAAGAAGCTCCGCAAAGCGAAAAGGGAGGCACCACCTGGTGAGAAGCCAGAGCCAGTCCGTACTCACCTTCGTAACATGATTATAGTTCCAGAAATGATTGGAAGCATCATTGGAGTGTACAATGGTAAGACCTTCAATCAGGTTGAAATCAAGCCTGAGATGATCAGCCACTACCTTGCTGAGTTCTCAATCTCATACAAGCCTGTAAAGCACGGTAGACCTGGTATTGGTGCCACCCACTCTTCGAGGTTCATTCCTCTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

153

Amino Acids

17.21

Weight (kDa)

10.44

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19	PF00203	50 - 135	3.3e-33	Ribosomal protein S19

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002331)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04270 AT1G04270 AT1G33850 AT5G09490 AT5G09500 AT5G09510 AT5G09510 AT5G43640
fragaria_vesca	FvH4_1g16020 FvH4_2g04890 FvH4_4g02630 FvH4_6g02650
malus_domestica	MD00G1187800.v1.1 MD04G1226500.v1.1 MD12G1243500.v1.1 MD13G1207000.v1.1 MD16G1208600.v1.1
prunus_persica	Prupe.1G030600_v2.0.a1 Prupe.6G345200_v2.0.a1
pyrus_communis	pycom04g19970 pycom12g22260 pycom13g17930
rosa_chinensis	RchiOBHm_Chr3g0450581 RchiOBHm_Chr4g0390491
rosa_laevigata	RLG00000009921 RLG00000025719
rosa_multiflora	Rmu_sc0000078.1_g000043 Rmu_sc0005951.1_g000014 Rmu_sc0013467.1_g000008 Rmu_sc0030937.1_g000001
rosa_roxburghii	Rroxscaffold_5G00336490 Rroxscaffold_6G00428280
rosa_rugosa	Rorug02G0628800 Rorug03G0330900
rosa_samantha	Rh3AG029600 Rh3BG030000 Rh3CG028900 Rh3DG029700 Rh4AG032200 Rh4CG035700 Rh4DG028600
rosa_wichuraiana	Rw3G002280

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	220, 422
AccI	GTMKAC	2 cut(s)	107, 409
AciI	CCGC	2 cut(s)	26, 202
AcuI	CTGAAG	2 cut(s)	55, 188
AcyI	GRCGYC	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	230
AfaI	GTAC	2 cut(s)	253, 311
AfiI	CCNNNNNNNGG	1 cut(s)	419
AflII	CTTAAG	1 cut(s)	452
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	3 cut(s)	58, 328, 338
AjnI	CCWGG	2 cut(s)	226, 412
AluBI	AGCT	6 cut(s)	32, 69, 118, 127, 143, 199
AluI	AGCT	6 cut(s)	32, 69, 118, 127, 143, 199
Alw21I	GWGCWC	2 cut(s)	120, 145
Alw26I	GTCTC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	174
AsuHPI	GGTGA	2 cut(s)	242, 248
BanI	GGYRCC	2 cut(s)	220, 422
BanII	GRGCYC	2 cut(s)	120, 145
Bbv12I	GWGCWC	2 cut(s)	120, 145
BbvI	GCAGC	1 cut(s)	41
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	2 cut(s)	228, 414
BclI	TGATCA	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	452
BisI	GCNGC	2 cut(s)	27, 30
BlsI	GCNGC	2 cut(s)	28, 31
Bme1390I	CCNGG	2 cut(s)	228, 414
BmiI	GGNNCC	2 cut(s)	222, 424
BmrFI	CCNGG	2 cut(s)	228, 414
BmsI	GCATC	2 cut(s)	79, 306
BpmI	CTGGAG	1 cut(s)	54
BsaHI	GRCGYC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	2 cut(s)	228, 414
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMII	CTCAG	2 cut(s)	339, 363
BseNI	ACTGG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	41
BshNI	GGYRCC	2 cut(s)	220, 422
BsiHKAI	GWGCWC	2 cut(s)	120, 145
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmAI	GTCTC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	8
Bsp1286I	GDGCHC	2 cut(s)	120, 145
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	1 cut(s)	354
BspACI	CCGC	2 cut(s)	26, 202
BspCNI	CTCAG	2 cut(s)	340, 364
BspLI	GGNNCC	2 cut(s)	222, 424
BspQI	GCTCTTC	1 cut(s)	134
BspT107I	GGYRCC	2 cut(s)	220, 422
BspTI	CTTAAG	1 cut(s)	452
BspTNI	GGTCTC	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	245
BssMI	GATC	1 cut(s)	354
BssNI	GRCGYC	1 cut(s)	78
Bst2UI	CCWGG	2 cut(s)	228, 414
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	3 cut(s)	41, 134, 439
BstACI	GRCGYC	1 cut(s)	78
BstAFI	CTTAAG	1 cut(s)	452
BstAUI	TGTACA	1 cut(s)	309
BstC8I	GCNNGC	2 cut(s)	145, 176
BstDEI	CTNAG	2 cut(s)	348, 372
BstF5I	GGATG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	1 cut(s)	357
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 124, 400
BstNI	CCWGG	2 cut(s)	228, 414
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	226, 412
BstV1I	GCAGC	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	145, 176
CfoI	GCGC	1 cut(s)	174
CseI	GACGC	1 cut(s)	67
CsiI	ACCWGGT	2 cut(s)	226, 412
Csp6I	GTAC	2 cut(s)	252, 310
CviAII	CATG	2 cut(s)	103, 268
CviQI	GTAC	2 cut(s)	252, 310
DdeI	CTNAG	2 cut(s)	348, 372
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
DraIII	CACNNNGTG	1 cut(s)	230
Eam1104I	CTCTTC	3 cut(s)	41, 134, 439
EarI	CTCTTC	3 cut(s)	41, 134, 439
Ecl136II	GAGCTC	2 cut(s)	118, 143
Eco24I	GRGCYC	2 cut(s)	120, 145
Eco31I	GGTCTC	1 cut(s)	8
Eco53kI	GAGCTC	2 cut(s)	118, 143
Eco57I	CTGAAG	2 cut(s)	55, 188
EcoICRI	GAGCTC	2 cut(s)	118, 143
EcoRII	CCWGG	2 cut(s)	226, 412
EcoT38I	GRGCYC	2 cut(s)	120, 145
FaeI	CATG	2 cut(s)	106, 271
FaiI	YATR	5 cut(s)	104, 182, 269, 275, 388
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	2 cut(s)	102, 267
FbaI	TGATCA	1 cut(s)	354
FblI	GTMKAC	2 cut(s)	107, 409
Fnu4HI	GCNGC	2 cut(s)	27, 30
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	2 cut(s)	120, 145
Fsp4HI	GCNGC	2 cut(s)	27, 30
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	2 cut(s)	27, 30
GsuI	CTGGAG	1 cut(s)	54
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	106, 271
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HphI	GGTGA	2 cut(s)	242, 248
Hpy166II	GTNNAC	3 cut(s)	108, 310, 410
Hpy188I	TCNGA	3 cut(s)	42, 159, 168
Hpy188III	TCNNGA	3 cut(s)	58, 98, 281
Hpy8I	GTNNAC	3 cut(s)	108, 310, 410
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	4 cut(s)	104, 144, 269, 334
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 124, 400
HpyF3I	CTNAG	2 cut(s)	348, 372
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	106, 271
HspAI	GCGC	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	1 cut(s)	354
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	204
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	2 cut(s)	79, 306
MabI	ACCWGGT	2 cut(s)	226, 412
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	4 cut(s)	55, 58, 121, 426
MhlI	GDGCHC	2 cut(s)	120, 145
MnlI	CCTC	4 cut(s)	155, 211, 432, 459
MseI	TTAA	2 cut(s)	192, 453
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	32
MspCI	CTTAAG	1 cut(s)	452
MspR9I	CCNGG	2 cut(s)	228, 414
MvaI	CCWGG	2 cut(s)	228, 414
MwoI	GCNNNNNNNGC	3 cut(s)	75, 124, 400
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	2 cut(s)	106, 271
NlaIV	GGNNCC	2 cut(s)	222, 424
NspI	RCATGY	1 cut(s)	106
PciI	ACATGT	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	28, 31
PscI	ACATGT	1 cut(s)	102
Psp124BI	GAGCTC	2 cut(s)	120, 145
Psp6I	CCWGG	2 cut(s)	226, 412
PspGI	CCWGG	2 cut(s)	226, 412
PspN4I	GGNNCC	2 cut(s)	222, 424
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	2 cut(s)	253, 311
RsaNI	GTAC	2 cut(s)	252, 310
RseI	CAYNNNNRTG	1 cut(s)	305
SacI	GAGCTC	2 cut(s)	120, 145
SapI	GCTCTTC	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	192, 453
SatI	GCNGC	2 cut(s)	27, 30
Sau3AI	GATC	1 cut(s)	354
ScrFI	CCNGG	2 cut(s)	228, 414
SduI	GDGCHC	2 cut(s)	120, 145
SexAI	ACCWGGT	2 cut(s)	226, 412
SfaNI	GCATC	2 cut(s)	79, 306
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
SsiI	CCGC	2 cut(s)	26, 202
SstI	GAGCTC	2 cut(s)	120, 145
StyD4I	CCNGG	2 cut(s)	226, 412
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	2 cut(s)	81, 437
TaqII	GACCGA	1 cut(s)	32
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	1 cut(s)	29
Tru1I	TTAA	2 cut(s)	192, 453
Tru9I	TTAA	2 cut(s)	192, 453
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	433
TspGWI	ACGGA	1 cut(s)	239
Vha464I	CTTAAG	1 cut(s)	452
XceI	RCATGY	1 cut(s)	106
XmiI	GTMKAC	2 cut(s)	107, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.