Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004490

Physical Location & Seq

Genomic Coordinates Forward (+)

1744444 .. 1747734

Gene Structure 3291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G05805.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTACCAATCATCATCCTCCACGTCATCATCATCGCAGAGATCATCGCTTCCCGGCGGCGGAGGACTGATCCGTTACGGCTCAGCTCCGGGATCGTTTCTAAACTCTGTGGTTGACGAAGTCATCGGAGGAGGCTCATCAAACGCTCGTGACTTCACCGGCTATCAACCGTCGTCGGATAACTTCATCGGTAACTTTTTCACCGGAGCTGCTGACTCATCCTCGCTGAGATCCGATTCGACGACTTGTGGAGTCAACAACTCATCCGACGGACAGAAACAGCTAGGCAATAACAATAATAATAATAGTAATAAAGATATCTTCCTCGACAGATCCTACGGTGGATTCAACGAGATCTCGCAACAACACAAGAGCAACGACATCGGAGGAGGAAACAGCTCAGGATCTTACTCTCTCGCTAGACAACGTAGCTCTCCCGCCGATTTCTTCACCTACCTCGCCTCAGATAAAAACAATTTCTCGTTGAACCAACCAACCAGTGATTATAGTCCGCAAGGAGGGTCTAATGGGGGACGAGGACATTCCAGATTGAAGTCTCAGCTAAGCTTCACGAATCACGACTCTCTGGCTCGGATCAACGAGGTCAATGAGACCCCAGTCCACGACGGTTCAGGCCATTCGTTTTCTGCGGCTAGCTTTGGTGCAGCCACTACTGATTCTTGGGATGACGGTTCCGGTTCGATAGGGTTTACCGTGACTAGGCCCAGTAAACGATCCAAGGACATGGACTCTGGTCTCTTTTCGCAGTATAGTCTTCCTTCAGACACTTCAATGAACTACATGGATAACTTCATGCAGCTTCCAGAAGATTCTGTACCCTGCAAAATCCGGGCCAAACGCGGCTGCGCCACCCATCCTAGAAGCATCGCTGAGCGGGAGAGGAGAACGAGAATAAGTGGGAAGCTAAAGAAGCTACAAGATCTTGTCCCCAACATGGATAAGCAAACAAGCTATTCAGACATGCTGGATTTAGCTGTACAACACATCAAAGGCCTTCAGCATCAACTTCAGAATTTGAAAAAAGATCAAGAGAATTGCACGTGTGGGTGCAGTGAGAAACCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

362

Amino Acids

38.95

Weight (kDa)

7.07

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	295 - 340	1.3e-08	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05805
fragaria_vesca	FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11740
malus_domestica	MD04G1033000.v1.1 MD05G1062100.v1.1 MD07G1058200.v1.1
prunus_persica	Prupe.1G181300_v2.0.a1 Prupe.1G181300_v2.0.a1
pyrus_communis	pycom04g02710 pycom16g26360
rosa_chinensis	RchiOBHm_Chr4g0409001
rosa_laevigata	RLG00000008598
rosa_multiflora	Rmu_sc0006766.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121800 Rroxscaffold_3G00239380 Rroxscaffold_5G00353460 Rroxscaffold_7G00197350
rosa_rugosa	Rorug04G0089200 Rorug04G0089300 Rorug04G0089400 Rorug04G0089500
rosa_samantha	Rh4AG153300 Rh4BG151400 Rh4CG161700 Rh4DG146600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	895
AccII	CGCG	1 cut(s)	861
AciI	CCGC	7 cut(s)	57, 60, 438, 512, 650, 861, 895
AclWI	GGATC	7 cut(s)	64, 100, 225, 327, 412, 602, 729
AcsI	RAATTY	1 cut(s)	1033
AcuI	CTGAAG	3 cut(s)	765, 1001, 1013
AcvI	CACGTG	1 cut(s)	1062
AfaI	GTAC	3 cut(s)	5, 837, 999
AfiI	CCNNNNNNNGG	4 cut(s)	59, 518, 720, 955
AflIII	ACRYGT	1 cut(s)	1061
AgsI	TTSAA	5 cut(s)	349, 487, 553, 792, 1039
AjiI	CACGTC	1 cut(s)	24
Alw26I	GTCTC	3 cut(s)	561, 605, 761
AlwI	GGATC	7 cut(s)	64, 100, 225, 327, 412, 602, 729
AoxI	GGCC	4 cut(s)	634, 722, 852, 1012
ApeKI	GCWGC	4 cut(s)	209, 665, 817, 864
ApoI	RAATTY	1 cut(s)	1033
AspLEI	GCGC	1 cut(s)	869
AspS9I	GGNCC	2 cut(s)	723, 852
AsuC2I	CCSGG	3 cut(s)	54, 90, 851
AsuHPI	GGTGA	3 cut(s)	148, 193, 442
AsuNHI	GCTAGC	1 cut(s)	653
BarI	GAAGNNNNNNTAC	2 cut(s)	819, 851
BauI	CACGAG	1 cut(s)	147
BbrPI	CACGTG	1 cut(s)	1062
BbsI	GAAGAC	1 cut(s)	767
BbvI	GCAGC	4 cut(s)	196, 677, 829, 851
BccI	CCATC	1 cut(s)	882
BceAI	ACGGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	2 cut(s)	364, 398
BcnI	CCSGG	3 cut(s)	54, 90, 851
BcoDI	GTCTC	3 cut(s)	561, 605, 761
BfaI	CTAG	6 cut(s)	284, 420, 654, 720, 879, 1087
BglII	AGATCT	2 cut(s)	354, 940
BisI	GCNGC	7 cut(s)	58, 210, 651, 666, 818, 862, 865
BlpI	GCTNAGC	3 cut(s)	82, 563, 891
BlsI	GCNGC	7 cut(s)	59, 211, 652, 667, 819, 863, 866
Bme1390I	CCNGG	3 cut(s)	54, 90, 851
BmgBI	CACGTC	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	723, 852
BmiI	GGNNCC	1 cut(s)	694
BmrFI	CCNGG	3 cut(s)	54, 90, 851
BmrI	ACTGGG	2 cut(s)	611, 720
BmsI	GCATC	2 cut(s)	894, 1030
BmtI	GCTAGC	1 cut(s)	657
BmuI	ACTGGG	2 cut(s)	611, 720
BoxI	GACNNNNGTC	2 cut(s)	617, 753
BpiI	GAAGAC	1 cut(s)	767
Bpu10I	CCTNAGC	1 cut(s)	400
Bpu1102I	GCTNAGC	3 cut(s)	82, 563, 891
BpuMI	CCSGG	3 cut(s)	54, 90, 851
BsaAI	YACGTR	1 cut(s)	1062
BsaI	GGTCTC	2 cut(s)	605, 761
BsaJI	CCNNGG	1 cut(s)	738
BsaWI	WCCGGW	2 cut(s)	203, 695
Bsc4I	CCNNNNNNNGG	4 cut(s)	59, 518, 720, 955
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	3 cut(s)	498, 617, 726
BseDI	CCNNGG	1 cut(s)	738
BseGI	GGATG	5 cut(s)	14, 218, 263, 691, 874
BseLI	CCNNNNNNNGG	4 cut(s)	59, 518, 720, 955
BseMII	CTCAG	6 cut(s)	96, 218, 414, 477, 572, 882
BseNI	ACTGG	3 cut(s)	498, 617, 726
BseRI	GAGGAG	3 cut(s)	144, 402, 916
BseXI	GCAGC	4 cut(s)	196, 677, 829, 851
BsgI	GTGCAG	1 cut(s)	684
Bsh1236I	CGCG	1 cut(s)	861
BshFI	GGCC	4 cut(s)	636, 724, 854, 1014
BsiSI	CCGG	6 cut(s)	54, 89, 159, 204, 696, 850
BslFI	GGGAC	2 cut(s)	546, 932
BslI	CCNNNNNNNGG	4 cut(s)	59, 518, 720, 955
BsmAI	GTCTC	3 cut(s)	561, 605, 761
BsmFI	GGGAC	2 cut(s)	546, 932
BsnI	GGCC	4 cut(s)	636, 724, 854, 1014
Bso31I	GGTCTC	2 cut(s)	605, 761
Bsp1407I	TGTACA	1 cut(s)	997
Bsp1720I	GCTNAGC	3 cut(s)	82, 563, 891
BspACI	CCGC	7 cut(s)	57, 60, 438, 512, 650, 861, 895
BspANI	GGCC	4 cut(s)	636, 724, 854, 1014
BspCNI	CTCAG	6 cut(s)	95, 219, 413, 476, 571, 883
BspFNI	CGCG	1 cut(s)	861
BspLI	GGNNCC	1 cut(s)	694
BspOI	GCTAGC	1 cut(s)	657
BspPI	GGATC	7 cut(s)	64, 100, 225, 327, 412, 602, 729
BspTNI	GGTCTC	2 cut(s)	605, 761
BsrBI	CCGCTC	1 cut(s)	895
BsrFI	RCCGGY	1 cut(s)	158
BsrGI	TGTACA	1 cut(s)	997
BsrI	ACTGG	3 cut(s)	498, 617, 726
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	738
BssSI	CACGAG	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	738
Bst2BI	CACGAG	1 cut(s)	147
Bst4CI	ACNGT	5 cut(s)	171, 341, 629, 692, 715
BstAUI	TGTACA	1 cut(s)	997
BstBAI	YACGTR	1 cut(s)	1062
BstC8I	GCNNGC	1 cut(s)	655
BstDEI	CTNAG	7 cut(s)	82, 227, 400, 463, 558, 563, 891
BstF5I	GGATG	5 cut(s)	14, 218, 263, 691, 874
BstFNI	CGCG	1 cut(s)	861
BstHHI	GCGC	1 cut(s)	869
BstMAI	GTCTC	3 cut(s)	561, 605, 761
BstMWI	GCNNNNNNNGC	1 cut(s)	931
BstNSI	RCATGY	1 cut(s)	985
BstPAI	GACNNNNGTC	2 cut(s)	617, 753
BstSCI	CCNGG	3 cut(s)	52, 88, 849
BstUI	CGCG	1 cut(s)	861
BstV1I	GCAGC	4 cut(s)	196, 677, 829, 851
BstV2I	GAAGAC	1 cut(s)	767
BstX2I	RGATCY	5 cut(s)	230, 332, 354, 404, 940
BstXI	CCANNNNNNTGG	1 cut(s)	745
BstYI	RGATCY	5 cut(s)	230, 332, 354, 404, 940
BsuRI	GGCC	4 cut(s)	636, 724, 854, 1014
BtgZI	GCGATG	3 cut(s)	18, 30, 871
BtrI	CACGTC	1 cut(s)	24
BtsCI	GGATG	5 cut(s)	14, 218, 263, 691, 874
BtsI	GCAGTG	1 cut(s)	1078
BtsIMutI	CAGTG	2 cut(s)	505, 1078
Cac8I	GCNNGC	1 cut(s)	655
CfoI	GCGC	1 cut(s)	869
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	723, 852
Csp6I	GTAC	3 cut(s)	4, 836, 998
CviAII	CATG	5 cut(s)	745, 802, 814, 955, 982
CviQI	GTAC	3 cut(s)	4, 836, 998
DdeI	CTNAG	7 cut(s)	82, 227, 400, 463, 558, 563, 891
EciI	GGCGGA	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	738
Eco147I	AGGCCT	1 cut(s)	1014
Eco31I	GGTCTC	2 cut(s)	605, 761
Eco32I	GATATC	1 cut(s)	319
Eco57I	CTGAAG	3 cut(s)	765, 1001, 1013
Eco72I	CACGTG	1 cut(s)	1062
EcoRV	GATATC	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	738
ErhI	CCWWGG	1 cut(s)	738
FaeI	CATG	5 cut(s)	748, 805, 817, 958, 985
FaiI	YATR	7 cut(s)	507, 746, 771, 803, 815, 956, 983
FaqI	GGGAC	2 cut(s)	546, 932
FatI	CATG	5 cut(s)	744, 801, 813, 954, 981
FauI	CCCGC	2 cut(s)	445, 888
Fnu4HI	GCNGC	7 cut(s)	58, 210, 651, 666, 818, 862, 865
FokI	GGATG	4 cut(s)	205, 250, 698, 861
Fsp4HI	GCNGC	7 cut(s)	58, 210, 651, 666, 818, 862, 865
FspBI	CTAG	6 cut(s)	284, 420, 654, 720, 879, 1087
GlaI	GCGC	1 cut(s)	868
GluI	GCNGC	7 cut(s)	58, 210, 651, 666, 818, 862, 865
HaeIII	GGCC	4 cut(s)	636, 724, 854, 1014
HapII	CCGG	6 cut(s)	54, 89, 159, 204, 696, 850
HhaI	GCGC	1 cut(s)	869
Hin1II	CATG	5 cut(s)	748, 805, 817, 958, 985
Hin6I	GCGC	1 cut(s)	867
HinP1I	GCGC	1 cut(s)	867
HincII	GTYRAC	2 cut(s)	115, 256
HindII	GTYRAC	2 cut(s)	115, 256
HindIII	AAGCTT	1 cut(s)	565
HinfI	GANTC	9 cut(s)	215, 236, 252, 345, 574, 581, 677, 749, 830
HpaII	CCGG	6 cut(s)	54, 89, 159, 204, 696, 850
HphI	GGTGA	3 cut(s)	148, 193, 442
Hpy166II	GTNNAC	5 cut(s)	115, 256, 622, 711, 731
Hpy188III	TCNNGA	7 cut(s)	149, 402, 546, 571, 578, 824, 1049
Hpy8I	GTNNAC	5 cut(s)	115, 256, 622, 711, 731
Hpy99I	CGWCG	5 cut(s)	175, 178, 244, 272, 629
HpyAV	CCTTC	2 cut(s)	789, 1025
HpyCH4III	ACNGT	5 cut(s)	171, 341, 629, 692, 715
HpyCH4IV	ACGT	3 cut(s)	23, 427, 1061
HpyCH4V	TGCA	5 cut(s)	665, 817, 843, 1059, 1071
HpyF10VI	GCNNNNNNNGC	1 cut(s)	931
HpyF3I	CTNAG	7 cut(s)	82, 227, 400, 463, 558, 563, 891
HpySE526I	ACGT	3 cut(s)	23, 427, 1061
Hsp92II	CATG	5 cut(s)	748, 805, 817, 958, 985
HspAI	GCGC	1 cut(s)	867
LmnI	GCTCC	2 cut(s)	91, 206
Lsp1109I	GCAGC	4 cut(s)	196, 677, 829, 851
LweI	GCATC	2 cut(s)	894, 1030
MaeI	CTAG	6 cut(s)	284, 420, 654, 720, 879, 1087
MaeII	ACGT	3 cut(s)	23, 427, 1061
MaeIII	GTNAC	4 cut(s)	74, 149, 191, 715
MbiI	CCGCTC	1 cut(s)	895
MboII	GAAGA	4 cut(s)	313, 439, 767, 839
MflI	RGATCY	5 cut(s)	230, 332, 354, 404, 940
MluCI	AATT	3 cut(s)	475, 1033, 1054
MlyI	GAGTC	4 cut(s)	209, 261, 575, 743
MmeI	TCCRAC	2 cut(s)	156, 291
MslI	CAYNNNNRTG	1 cut(s)	791
MspI	CCGG	6 cut(s)	54, 89, 159, 204, 696, 850
MspR9I	CCNGG	3 cut(s)	54, 90, 851
MvnI	CGCG	1 cut(s)	861
MwoI	GCNNNNNNNGC	1 cut(s)	931
NciI	CCSGG	3 cut(s)	54, 90, 851
NheI	GCTAGC	1 cut(s)	653
NlaIII	CATG	5 cut(s)	748, 805, 817, 958, 985
NlaIV	GGNNCC	1 cut(s)	694
NmuCI	GTSAC	2 cut(s)	149, 715
NspI	RCATGY	1 cut(s)	985
PceI	AGGCCT	1 cut(s)	1014
PfeI	GAWTC	5 cut(s)	236, 345, 574, 677, 830
PflFI	GACNNNGTC	1 cut(s)	119
PfoI	TCCNGGA	1 cut(s)	88
PkrI	GCNGC	7 cut(s)	59, 211, 652, 667, 819, 863, 866
PleI	GAGTC	4 cut(s)	209, 260, 575, 743
PmaCI	CACGTG	1 cut(s)	1062
PmlI	CACGTG	1 cut(s)	1062
PpsI	GAGTC	4 cut(s)	209, 260, 575, 743
Ppu21I	YACGTR	1 cut(s)	1062
PshAI	GACNNNNGTC	2 cut(s)	617, 753
PspCI	CACGTG	1 cut(s)	1062
PspN4I	GGNNCC	1 cut(s)	694
PspPI	GGNCC	2 cut(s)	723, 852
PsuI	RGATCY	5 cut(s)	230, 332, 354, 404, 940
PsyI	GACNNNGTC	1 cut(s)	119
RsaI	GTAC	3 cut(s)	5, 837, 999
RsaNI	GTAC	3 cut(s)	4, 836, 998
RseI	CAYNNNNRTG	1 cut(s)	791
SatI	GCNGC	7 cut(s)	58, 210, 651, 666, 818, 862, 865
Sau96I	GGNCC	2 cut(s)	723, 852
SchI	GAGTC	4 cut(s)	209, 261, 575, 743
ScrFI	CCNGG	3 cut(s)	54, 90, 851
SfaNI	GCATC	2 cut(s)	894, 1030
SmiMI	CAYNNNNRTG	1 cut(s)	791
Sse9I	AATT	3 cut(s)	475, 1033, 1054
SseBI	AGGCCT	1 cut(s)	1014
SsiI	CCGC	7 cut(s)	57, 60, 438, 512, 650, 861, 895
SspMI	CTAG	6 cut(s)	284, 420, 654, 720, 879, 1087
StuI	AGGCCT	1 cut(s)	1014
StyD4I	CCNGG	3 cut(s)	52, 88, 849
StyI	CCWWGG	1 cut(s)	738
TaaI	ACNGT	5 cut(s)	171, 341, 629, 692, 715
TaiI	ACGT	3 cut(s)	26, 430, 1064
TaqI	TCGA	3 cut(s)	239, 327, 701
TasI	AATT	3 cut(s)	475, 1033, 1054
TatI	WGTACW	1 cut(s)	997
TauI	GCSGC	3 cut(s)	60, 653, 864
TfiI	GAWTC	5 cut(s)	236, 345, 574, 677, 830
TscAI	CASTG	2 cut(s)	505, 1078
TseFI	GTSAC	2 cut(s)	149, 715
TseI	GCWGC	4 cut(s)	209, 665, 817, 864
Tsp45I	GTSAC	2 cut(s)	149, 715
TspDTI	ATGAA	3 cut(s)	175, 802, 809
TspGWI	ACGGA	2 cut(s)	62, 285
TspRI	CASTG	2 cut(s)	505, 1078
Tth111I	GACNNNGTC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	1033
XceI	RCATGY	1 cut(s)	985
XspI	CTAG	6 cut(s)	284, 420, 654, 720, 879, 1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.