Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004490

Physical Location & Seq

Genomic Coordinates Forward (+)

5399310 .. 5399849

Gene Structure 540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1058200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTATCCCATAAACTCATCCTCCTCGCCTCAAAAGCCCATGGCCTCGAGACCAAGCACAACGGGCCTGACCCACTACGGCTCCGCCCCAGGATCCCTCCTAAACTCAGTCGTGAACTCCGTCATGGAAGCCGCCGCCGACCGTGAATTCTCATCCCTCCAACCGCAGCATTTACGAGGCCACTACTTCTCCAGAGAAGGTGGCGGCGACTCTCCCTCCCTCACTAGCTCCGAGTCCAGCTTCAAAGTCAACTCATCCAACTGCAGCCACATGGGCACCAGCATCACCAAGCCATTGCTCCAATCGCACGCTTTGAACGAGATTGGATCTTTCAACTCTTTTTCTAGTTATTTGACGTCGTCGGCGGCTCTGGTTCACCAGCGAATCTCTCCAGCTGGCTTCTTCAACCATCTCATCGCCCCTGAGAATAATGGAGGATTCTCAGTTACAAGAGAAACTGGAAGCTATAGATCACAAAAGGGCAATAATGGTGGTCACAGAGTAACAAGATTAAAGTCGCAGTTGAGCTTCACTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

180

Amino Acids

19.07

Weight (kDa)

9.66

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05805
fragaria_vesca	FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11740
malus_domestica	MD04G1033000.v1.1 MD05G1062100.v1.1 MD07G1058200.v1.1
prunus_persica	Prupe.1G181300_v2.0.a1 Prupe.1G181300_v2.0.a1
pyrus_communis	pycom04g02710 pycom16g26360
rosa_chinensis	RchiOBHm_Chr4g0409001
rosa_laevigata	RLG00000008598
rosa_multiflora	Rmu_sc0006766.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121800 Rroxscaffold_3G00239380 Rroxscaffold_5G00353460 Rroxscaffold_7G00197350
rosa_rugosa	Rorug04G0089200 Rorug04G0089300 Rorug04G0089400 Rorug04G0089500
rosa_samantha	Rh4AG153300 Rh4BG151400 Rh4CG161700 Rh4DG146600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	359
AccB1I	GGYRCC	1 cut(s)	275
AciI	CCGC	6 cut(s)	84, 132, 135, 164, 204, 365
AclWI	GGATC	3 cut(s)	87, 100, 334
AcsI	RAATTY	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	356
AgsI	TTSAA	4 cut(s)	244, 316, 334, 406
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	5 cut(s)	228, 240, 395, 465, 528
AluI	AGCT	5 cut(s)	228, 240, 395, 465, 528
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	3 cut(s)	87, 100, 334
Ama87I	CYCGRG	1 cut(s)	46
AoxI	GGCC	3 cut(s)	42, 64, 178
ApeKI	GCWGC	2 cut(s)	166, 264
ApoI	RAATTY	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	2 cut(s)	277, 368
AvaI	CYCGRG	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	278
BamHI	GGATCC	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	178, 276
BccI	CCATC	1 cut(s)	417
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	90
BciVI	GTATCC	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	2 cut(s)	225, 345
BfmI	CTRYAG	2 cut(s)	262, 466
BfuI	GTATCC	1 cut(s)	15
BglI	GCCNNNNNGGC	1 cut(s)	273
BisI	GCNGC	6 cut(s)	132, 135, 167, 205, 265, 366
BlsI	GCNGC	6 cut(s)	133, 136, 168, 206, 266, 367
Bme1390I	CCNGG	1 cut(s)	90
BmeT110I	CYCGRG	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	3 cut(s)	82, 94, 277
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	1 cut(s)	291
BpmI	CTGGAG	2 cut(s)	175, 375
BsaHI	GRCGYC	1 cut(s)	356
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	39, 88
BsaXI	ACNNNNNCTCC	8 cut(s)	5, 35, 65, 95, 173, 200, 203, 230
Bse1I	ACTGG	2 cut(s)	463, 538
Bse3DI	GCAATG	1 cut(s)	293
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	39, 88
BseGI	GGATG	3 cut(s)	17, 152, 254
BseMI	GCAATG	1 cut(s)	293
BseMII	CTCAG	3 cut(s)	120, 414, 456
BseNI	ACTGG	2 cut(s)	463, 538
BseRI	GAGGAG	1 cut(s)	13
BseSI	GKGCMC	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	178, 276
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	3 cut(s)	44, 66, 180
BshNI	GGYRCC	1 cut(s)	275
BsiEI	CGRYCG	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	43
BsnI	GGCC	3 cut(s)	44, 66, 180
Bso31I	GGTCTC	1 cut(s)	43
BsoBI	CYCGRG	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	92, 326, 470
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	6 cut(s)	84, 132, 135, 164, 204, 365
BspANI	GGCC	3 cut(s)	44, 66, 180
BspCNI	CTCAG	3 cut(s)	119, 415, 455
BspLI	GGNNCC	3 cut(s)	82, 94, 277
BspMAI	CTGCAG	1 cut(s)	266
BspPI	GGATC	3 cut(s)	87, 100, 334
BspT107I	GGYRCC	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	293
BsrI	ACTGG	2 cut(s)	463, 538
BssECI	CCNNGG	2 cut(s)	39, 88
BssMI	GATC	3 cut(s)	92, 326, 470
BssNI	GRCGYC	1 cut(s)	356
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	309, 397
BstDEI	CTNAG	3 cut(s)	106, 423, 442
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	3 cut(s)	17, 152, 254
BstKTI	GATC	3 cut(s)	95, 329, 473
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	3 cut(s)	92, 326, 470
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 63, 273, 304
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	2 cut(s)	262, 466
BstSLI	GKGCMC	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	178, 276
BstX2I	RGATCY	2 cut(s)	92, 326
BstYI	RGATCY	2 cut(s)	92, 326
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	3 cut(s)	44, 66, 180
BtgI	CCRYGG	1 cut(s)	39
BtgZI	GCGATG	1 cut(s)	400
BtsCI	GGATG	3 cut(s)	17, 152, 254
BtsIMutI	CAGTG	1 cut(s)	531
Cac8I	GCNNGC	2 cut(s)	309, 397
Cfr13I	GGNCC	1 cut(s)	64
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	3 cut(s)	40, 124, 271
DdeI	CTNAG	3 cut(s)	106, 423, 442
DpnI	GATC	3 cut(s)	94, 328, 472
DpnII	GATC	3 cut(s)	92, 326, 470
EciI	GGCGGA	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	46
EcoRI	GAATTC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	3 cut(s)	43, 127, 274
FaiI	YATR	5 cut(s)	11, 41, 125, 272, 468
FatI	CATG	3 cut(s)	39, 123, 270
Fnu4HI	GCNGC	6 cut(s)	132, 135, 167, 205, 265, 366
FokI	GGATG	3 cut(s)	4, 139, 241
Fsp4HI	GCNGC	6 cut(s)	132, 135, 167, 205, 265, 366
FspBI	CTAG	2 cut(s)	225, 345
GluI	GCNGC	6 cut(s)	132, 135, 167, 205, 265, 366
GsuI	CTGGAG	2 cut(s)	175, 375
HaeIII	GGCC	3 cut(s)	44, 66, 180
Hin1I	GRCGYC	1 cut(s)	356
Hin1II	CATG	3 cut(s)	43, 127, 274
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	4 cut(s)	209, 233, 384, 438
HphI	GGTGA	2 cut(s)	277, 368
Hpy166II	GTNNAC	3 cut(s)	115, 250, 376
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	3 cut(s)	48, 112, 192
Hpy8I	GTNNAC	3 cut(s)	115, 250, 376
Hpy99I	CGWCG	2 cut(s)	361, 364
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	1 cut(s)	264
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 63, 273, 304
HpyF3I	CTNAG	3 cut(s)	106, 423, 442
HpySE526I	ACGT	1 cut(s)	356
Hsp92I	GRCGYC	1 cut(s)	356
Hsp92II	CATG	3 cut(s)	43, 127, 274
Kzo9I	GATC	3 cut(s)	92, 326, 470
LmnI	GCTCC	3 cut(s)	86, 233, 303
Lsp1109I	GCAGC	2 cut(s)	178, 276
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	2 cut(s)	225, 345
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	3 cut(s)	445, 494, 502
MalI	GATC	3 cut(s)	94, 328, 472
MboI	GATC	3 cut(s)	92, 326, 470
MboII	GAAGA	1 cut(s)	394
MflI	RGATCY	2 cut(s)	92, 326
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	1 cut(s)	146
MlyI	GAGTC	2 cut(s)	203, 242
MmeI	TCCRAC	2 cut(s)	184, 282
MseI	TTAA	1 cut(s)	512
MspA1I	CMGCKG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	4 cut(s)	34, 63, 273, 304
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	3 cut(s)	92, 326, 470
NlaIII	CATG	3 cut(s)	43, 127, 274
NlaIV	GGNNCC	3 cut(s)	82, 94, 277
NmuCI	GTSAC	1 cut(s)	494
PaeR7I	CTCGAG	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 315
PfeI	GAWTC	2 cut(s)	384, 438
PflFI	GACNNNGTC	1 cut(s)	358
PkrI	GCNGC	6 cut(s)	133, 136, 168, 206, 266, 367
PleI	GAGTC	2 cut(s)	203, 241
PpsI	GAGTC	2 cut(s)	203, 241
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	3 cut(s)	82, 94, 277
PspPI	GGNCC	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	266
PsuI	RGATCY	2 cut(s)	92, 326
PsyI	GACNNNGTC	1 cut(s)	358
PvuII	CAGCTG	1 cut(s)	395
SaqAI	TTAA	1 cut(s)	512
SatI	GCNGC	6 cut(s)	132, 135, 167, 205, 265, 366
Sau3AI	GATC	3 cut(s)	92, 326, 470
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	2 cut(s)	203, 242
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	7 cut(s)	202, 230, 242, 359, 397, 467, 530
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	2 cut(s)	262, 466
Sfr274I	CTCGAG	1 cut(s)	46
SlaI	CTCGAG	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	6 cut(s)	84, 132, 135, 164, 204, 365
SspMI	CTAG	2 cut(s)	225, 345
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	1 cut(s)	47
TasI	AATT	1 cut(s)	146
TauI	GCSGC	4 cut(s)	134, 137, 207, 368
TfiI	GAWTC	2 cut(s)	384, 438
Tru1I	TTAA	1 cut(s)	512
Tru9I	TTAA	1 cut(s)	512
TscAI	CASTG	1 cut(s)	538
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	2 cut(s)	166, 264
Tsp45I	GTSAC	1 cut(s)	494
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	538
Tth111I	GACNNNGTC	1 cut(s)	358
XapI	RAATTY	1 cut(s)	146
XhoI	CTCGAG	1 cut(s)	46
XspI	CTAG	2 cut(s)	225, 345
ZraI	GACGTC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.