Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004490

Physical Location & Seq

Genomic Coordinates Reverse (-)

13821246 .. 13823081

Gene Structure 1836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0089300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGTTTCTGCCATATTATTATGTTGGCTTTCACGTCTTTCACCCTGACATTTAGTGCTTCAGCTTCAAACTGGACCATCATCAAAACTCTACCAGGTTATTCTGGTGATCTTCCTTTCGCTTTAGAATCTGGATATATTGGTGTAGGAGACGATGAAGAAGTGCAGCTGTTTTACTATTTTATCGAGTCTCAGAGGAACCCTGCACAAGATCCTCTGCTGTATTGGATCACTGGAGGCCCTGGTTGCTCTAGTCTTGCTGGATTTTTCTTTGAGAGTGGTCCATTGGTTTTCAACTACAAAGATTACAATGGAAGCCTACCAACACTTCAGGACAATCCTTATGCATGGACACAGGGACTCAACATCATATACTTGGATGCACCAGTTGGTGCCGGATACTCCTACTCAGAAACCCAAAGTGGTTATGTTATGGATGACTATAAATTTGTGGCTCAAATTTATGAATTTCTGCAAAAGGTGTGCCATAATTATTGTTGTATATATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

170

Amino Acids

19.09

Weight (kDa)

4.13

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	32 - 160	1.2e-44	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05805
fragaria_vesca	FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11740
malus_domestica	MD04G1033000.v1.1 MD05G1062100.v1.1 MD07G1058200.v1.1
prunus_persica	Prupe.1G181300_v2.0.a1 Prupe.1G181300_v2.0.a1
pyrus_communis	pycom04g02710 pycom16g26360
rosa_chinensis	RchiOBHm_Chr4g0409001
rosa_laevigata	RLG00000008598
rosa_multiflora	Rmu_sc0006766.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121800 Rroxscaffold_3G00239380 Rroxscaffold_5G00353460 Rroxscaffold_7G00197350
rosa_rugosa	Rorug04G0089200 Rorug04G0089300 Rorug04G0089400 Rorug04G0089500
rosa_samantha	Rh4AG153300 Rh4BG151400 Rh4CG161700 Rh4DG146600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	392
AclWI	GGATC	2 cut(s)	206, 236
AcsI	RAATTY	3 cut(s)	446, 459, 467
AcuI	CTGAAG	2 cut(s)	45, 314
AgsI	TTSAA	2 cut(s)	69, 295
AjiI	CACGTC	1 cut(s)	36
AjnI	CCWGG	2 cut(s)	94, 241
AluBI	AGCT	2 cut(s)	65, 169
AluI	AGCT	2 cut(s)	65, 169
Alw26I	GTCTC	2 cut(s)	144, 195
AlwI	GGATC	2 cut(s)	206, 236
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	1 cut(s)	166
ApoI	RAATTY	3 cut(s)	446, 459, 467
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
AspS9I	GGNCC	3 cut(s)	75, 239, 281
AsuHPI	GGTGA	2 cut(s)	34, 119
AvaII	GGWCC	2 cut(s)	75, 281
BanI	GGYRCC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	96, 243
BciVI	GTATCC	1 cut(s)	392
BcoDI	GTCTC	2 cut(s)	144, 195
BfaI	CTAG	1 cut(s)	252
BfuI	GTATCC	1 cut(s)	392
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
Bme1390I	CCNGG	2 cut(s)	96, 243
Bme18I	GGWCC	2 cut(s)	75, 281
BmgBI	CACGTC	1 cut(s)	36
BmgT120I	GGNCC	3 cut(s)	75, 239, 281
BmiI	GGNNCC	2 cut(s)	200, 394
BmrFI	CCNGG	2 cut(s)	96, 243
BmsI	GCATC	1 cut(s)	370
BpmI	CTGGAG	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	241
Bse1I	ACTGG	3 cut(s)	77, 238, 386
BseBI	CCWGG	2 cut(s)	96, 243
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	2 cut(s)	385, 442
BseMII	CTCAG	2 cut(s)	206, 423
BseNI	ACTGG	3 cut(s)	77, 238, 386
BseXI	GCAGC	1 cut(s)	178
BsgI	GTGCAG	2 cut(s)	185, 189
BshFI	GGCC	1 cut(s)	240
BshNI	GGYRCC	1 cut(s)	392
BsiSI	CCGG	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	372
BsmAI	GTCTC	2 cut(s)	144, 195
BsmBI	CGTCTC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	1 cut(s)	240
Bsp143I	GATC	3 cut(s)	109, 211, 228
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	2 cut(s)	205, 422
BspLI	GGNNCC	2 cut(s)	200, 394
BspPI	GGATC	2 cut(s)	206, 236
BspT107I	GGYRCC	1 cut(s)	392
BsrI	ACTGG	3 cut(s)	77, 238, 386
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	3 cut(s)	109, 211, 228
Bst2UI	CCWGG	2 cut(s)	96, 243
BstDEI	CTNAG	2 cut(s)	192, 409
BstF5I	GGATG	2 cut(s)	385, 442
BstKTI	GATC	3 cut(s)	112, 214, 231
BstMAI	GTCTC	2 cut(s)	144, 195
BstMBI	GATC	3 cut(s)	109, 211, 228
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNI	CCWGG	2 cut(s)	96, 243
BstSCI	CCNGG	2 cut(s)	94, 241
BstV1I	GCAGC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuI	GTATCC	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	240
BtrI	CACGTC	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	385, 442
BtsIMutI	CAGTG	1 cut(s)	231
Cfr13I	GGNCC	3 cut(s)	75, 239, 281
CsiI	ACCWGGT	1 cut(s)	94
CviAII	CATG	1 cut(s)	348
CviJI	RGCY	6 cut(s)	29, 65, 169, 240, 318, 455
CviKI_1	RGCY	6 cut(s)	29, 65, 169, 240, 318, 455
DdeI	CTNAG	2 cut(s)	192, 409
DpnI	GATC	3 cut(s)	111, 213, 230
DpnII	GATC	3 cut(s)	109, 211, 228
Eco47I	GGWCC	2 cut(s)	75, 281
Eco57I	CTGAAG	2 cut(s)	45, 314
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	94, 241
EcoT22I	ATGCAT	1 cut(s)	349
Esp3I	CGTCTC	1 cut(s)	144
FaeI	CATG	1 cut(s)	351
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	1 cut(s)	347
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	2 cut(s)	392, 449
Fsp4HI	GCNGC	1 cut(s)	167
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	1 cut(s)	167
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	1 cut(s)	396
Hin1II	CATG	1 cut(s)	351
HinfI	GANTC	3 cut(s)	128, 188, 360
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	2 cut(s)	34, 119
Hpy188I	TCNGA	2 cut(s)	195, 412
Hpy188III	TCNNGA	2 cut(s)	132, 332
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	5 cut(s)	166, 206, 347, 383, 475
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpyF3I	CTNAG	2 cut(s)	192, 409
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	351
Kzo9I	GATC	3 cut(s)	109, 211, 228
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	1 cut(s)	370
MabI	ACCWGGT	1 cut(s)	94
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	35
MalI	GATC	3 cut(s)	111, 213, 230
MboI	GATC	3 cut(s)	109, 211, 228
MboII	GAAGA	2 cut(s)	104, 170
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	4 cut(s)	446, 459, 467, 490
MlyI	GAGTC	2 cut(s)	197, 354
MnlI	CCTC	3 cut(s)	189, 225, 230
Mph1103I	ATGCAT	1 cut(s)	349
MseI	TTAA	1 cut(s)	511
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	1 cut(s)	396
MspR9I	CCNGG	2 cut(s)	96, 243
MvaI	CCWGG	2 cut(s)	96, 243
MwoI	GCNNNNNNNGC	1 cut(s)	246
NdeII	GATC	3 cut(s)	109, 211, 228
NlaIII	CATG	1 cut(s)	351
NlaIV	GGNNCC	2 cut(s)	200, 394
NsiI	ATGCAT	1 cut(s)	349
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	168
PleI	GAGTC	2 cut(s)	196, 354
PpsI	GAGTC	2 cut(s)	196, 354
Psp6I	CCWGG	2 cut(s)	94, 241
PspGI	CCWGG	2 cut(s)	94, 241
PspN4I	GGNNCC	2 cut(s)	200, 394
PspPI	GGNCC	3 cut(s)	75, 239, 281
PsuI	RGATCY	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	511
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	3 cut(s)	109, 211, 228
Sau96I	GGNCC	3 cut(s)	75, 239, 281
SchI	GAGTC	2 cut(s)	197, 354
ScrFI	CCNGG	2 cut(s)	96, 243
SetI	ASST	5 cut(s)	38, 67, 100, 171, 483
SexAI	ACCWGGT	1 cut(s)	94
SfaNI	GCATC	1 cut(s)	370
SinI	GGWCC	2 cut(s)	75, 281
Sse9I	AATT	4 cut(s)	446, 459, 467, 490
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	94, 241
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	186
TasI	AATT	4 cut(s)	446, 459, 467, 490
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	511
Tru9I	TTAA	1 cut(s)	511
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	1 cut(s)	166
TspDTI	ATGAA	2 cut(s)	171, 480
TspRI	CASTG	1 cut(s)	238
VpaK11BI	GGWCC	2 cut(s)	75, 281
XapI	RAATTY	3 cut(s)	446, 459, 467
XspI	CTAG	1 cut(s)	252
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.