Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004490

Physical Location & Seq

Genomic Coordinates Forward (+)

31266605 .. 31275450

Gene Structure 8846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00353460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCGGCCGCGATTGGATCTTCTTCTTCTACCTCGTGTTCTTCCTCGGCTCTGGTTCGCCAGAGAAGCTCTCCAGCTGGCTTCCTGAGCCATCTCACTGATAACAATGGAGGATTTTCAGTTACACGGGGAAGTGGAAGCTATAGCTCACAAGGTGGGCCTAATGGTGGCCATGGAGGAACAAGGTTGAAGTCCCAATTGAGCTTCACTAGGCAAGATTCTCTTTCTCAAATCTCTGAAGTTAGTGAAAATGTTGTCGAAGGTGTTAGCTCTACCAGTGGCCAACATAGTGCCATGCATTCTTATCCCGCTACTAGCTTTGGGATGGACTCCTGGGATAATACCAATTCTATTGTCTTTTCTGCTCCAACAAGTAAACGAGCTAAAAATATGGATGGTGACATATTTAACTGCCTCAATACCTTAGAATCTCAGTTTAGCCTGCCCCAGACATCTTTAGAAATGGCAACAGTGGAGAAGCTACTACACATCCCTGAAGATTCAGTTCCTTGCAAAATCCGTGCTAAGCGTGGCTGTGCAACTCATCCCAGAAGCATTGCTGAGAGGAATCGGATTGTAGGACTTTCACACCCATTCTTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010119 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

201

Amino Acids

21.25

Weight (kDa)

8.43

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05805
fragaria_vesca	FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11732 FvH4_4g11740
malus_domestica	MD04G1033000.v1.1 MD05G1062100.v1.1 MD07G1058200.v1.1
prunus_persica	Prupe.1G181300_v2.0.a1 Prupe.1G181300_v2.0.a1
pyrus_communis	pycom04g02710 pycom16g26360
rosa_chinensis	RchiOBHm_Chr4g0409001
rosa_laevigata	RLG00000008598
rosa_multiflora	Rmu_sc0006766.1_g000012
rosa_roxburghii	Rroxscaffold_2G00121800 Rroxscaffold_3G00239380 Rroxscaffold_5G00353460 Rroxscaffold_7G00197350
rosa_rugosa	Rorug04G0089200 Rorug04G0089300 Rorug04G0089400 Rorug04G0089500
rosa_samantha	Rh4AG153300 Rh4BG151400 Rh4CG161700 Rh4DG146600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	599
AccII	CGCG	1 cut(s)	11
AciI	CCGC	3 cut(s)	5, 9, 309
AclWI	GGATC	1 cut(s)	25
AcoI	YGGCCR	3 cut(s)	6, 169, 280
AcuI	CTGAAG	2 cut(s)	258, 516
AdeI	CACNNNGTG	1 cut(s)	155
AfiI	CCNNNNNNNGG	2 cut(s)	167, 599
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	332
AluBI	AGCT	9 cut(s)	69, 77, 141, 147, 204, 270, 318, 383, 481
AluI	AGCT	9 cut(s)	69, 77, 141, 147, 204, 270, 318, 383, 481
AlwI	GGATC	1 cut(s)	25
AoxI	GGCC	4 cut(s)	6, 158, 169, 280
AspS9I	GGNCC	1 cut(s)	158
AsuHPI	GGTGA	1 cut(s)	410
BalI	TGGCCA	2 cut(s)	171, 282
BauI	CACGAG	1 cut(s)	34
BccI	CCATC	3 cut(s)	99, 319, 389
BciT130I	CCWGG	1 cut(s)	334
BfaI	CTAG	2 cut(s)	210, 315
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	2 cut(s)	6, 9
BlpI	GCTNAGC	1 cut(s)	525
BlsI	GCNGC	2 cut(s)	7, 10
Bme1390I	CCNGG	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	334
BplI	GAGNNNNNCTC	2 cut(s)	55, 87
BpmI	CTGGAG	1 cut(s)	57
Bpu10I	CCTNAGC	1 cut(s)	86
Bpu1102I	GCTNAGC	1 cut(s)	525
BsaJI	CCNNGG	3 cut(s)	45, 172, 333
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 599
Bse1I	ACTGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	555
BseBI	CCWGG	1 cut(s)	334
BseDI	CCNNGG	3 cut(s)	45, 172, 333
BseGI	GGATG	4 cut(s)	330, 400, 489, 544
BseLI	CCNNNNNNNGG	2 cut(s)	167, 599
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	3 cut(s)	77, 446, 552
BseNI	ACTGG	1 cut(s)	276
BseX3I	CGGCCG	1 cut(s)	6
Bsh1236I	CGCG	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	4 cut(s)	8, 160, 171, 282
BsiEI	CGRYCG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	167, 599
BsmFI	GGGAC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	4 cut(s)	8, 160, 171, 282
Bsp143I	GATC	1 cut(s)	17
Bsp1720I	GCTNAGC	1 cut(s)	525
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	3 cut(s)	5, 9, 309
BspANI	GGCC	4 cut(s)	8, 160, 171, 282
BspCNI	CTCAG	3 cut(s)	78, 445, 553
BspFNI	CGCG	1 cut(s)	11
BspPI	GGATC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	555
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	3 cut(s)	45, 172, 333
BssMI	GATC	1 cut(s)	17
BssSI	CACGAG	1 cut(s)	34
BssT1I	CCWWGG	1 cut(s)	172
Bst2BI	CACGAG	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	334
Bst4CI	ACNGT	1 cut(s)	472
BstC8I	GCNNGC	2 cut(s)	79, 443
BstDEI	CTNAG	5 cut(s)	86, 424, 432, 525, 561
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	4 cut(s)	330, 400, 489, 544
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	17
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 87
BstNI	CCWGG	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	332
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	4 cut(s)	8, 160, 171, 282
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	4 cut(s)	330, 400, 489, 544
BtsIMutI	CAGTG	3 cut(s)	96, 283, 477
Cac8I	GCNNGC	2 cut(s)	79, 443
CciNI	GCGGCCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	158
CviAII	CATG	2 cut(s)	173, 295
DdeI	CTNAG	5 cut(s)	86, 424, 432, 525, 561
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
DraIII	CACNNNGTG	1 cut(s)	155
EaeI	YGGCCR	3 cut(s)	6, 169, 280
EagI	CGGCCG	1 cut(s)	6
EclXI	CGGCCG	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	172
Eco52I	CGGCCG	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	258, 516
EcoRII	CCWGG	1 cut(s)	332
EcoT14I	CCWWGG	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	2 cut(s)	176, 298
FaiI	YATR	6 cut(s)	144, 174, 288, 296, 392, 404
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	2 cut(s)	172, 294
FauI	CCCGC	1 cut(s)	316
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	4 cut(s)	337, 407, 476, 531
Fsp4HI	GCNGC	2 cut(s)	6, 9
FspBI	CTAG	2 cut(s)	210, 315
GluI	GCNGC	2 cut(s)	6, 9
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	4 cut(s)	8, 160, 171, 282
Hin1II	CATG	2 cut(s)	176, 298
HinfI	GANTC	5 cut(s)	218, 329, 428, 500, 568
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	2 cut(s)	238, 573
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	254
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4V	TGCA	3 cut(s)	298, 513, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 87
HpyF3I	CTNAG	5 cut(s)	86, 424, 432, 525, 561
Hsp92II	CATG	2 cut(s)	176, 298
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	370
MaeI	CTAG	2 cut(s)	210, 315
MaeIII	GTNAC	2 cut(s)	121, 398
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	5 cut(s)	12, 15, 18, 33, 509
MfeI	CAATTG	1 cut(s)	197
MflI	RGATCY	1 cut(s)	17
MlsI	TGGCCA	2 cut(s)	171, 282
MluCI	AATT	2 cut(s)	197, 346
MluNI	TGGCCA	2 cut(s)	171, 282
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	6 cut(s)	43, 55, 104, 170, 425, 558
Mox20I	TGGCCA	2 cut(s)	171, 282
Mph1103I	ATGCAT	1 cut(s)	300
MscI	TGGCCA	2 cut(s)	171, 282
MseI	TTAA	1 cut(s)	408
Msp20I	TGGCCA	2 cut(s)	171, 282
MspA1I	CMGCKG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	334
MunI	CAATTG	1 cut(s)	197
Mva1269I	GAATGC	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	334
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	66, 87
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	176, 298
NmeAIII	GCCGAG	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	398
NotI	GCGGCCGC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	300
PctI	GAATGC	1 cut(s)	298
PfeI	GAWTC	4 cut(s)	218, 428, 500, 568
PflMI	CCANNNNNTGG	1 cut(s)	599
PkrI	GCNGC	2 cut(s)	7, 10
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	332
PspPI	GGNCC	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	334
SfcI	CTRYAG	1 cut(s)	142
Sse9I	AATT	2 cut(s)	197, 346
SsiI	CCGC	3 cut(s)	5, 9, 309
SspMI	CTAG	2 cut(s)	210, 315
StyD4I	CCNGG	1 cut(s)	332
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	472
TaqI	TCGA	1 cut(s)	258
TasI	AATT	2 cut(s)	197, 346
TauI	GCSGC	2 cut(s)	8, 11
TfiI	GAWTC	4 cut(s)	218, 428, 500, 568
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	3 cut(s)	103, 283, 477
TseFI	GTSAC	1 cut(s)	398
Tsp45I	GTSAC	1 cut(s)	398
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	3 cut(s)	103, 283, 477
Van91I	CCANNNNNTGG	1 cut(s)	599
XspI	CTAG	2 cut(s)	210, 315
Zsp2I	ATGCAT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.